Wall clock time and date at job start Tue Mar 31 2020 20:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47430 * 2 1 4 4 H 1.09003 * 109.52544 * 55.07553 * 3 2 1 5 5 C 1.53188 * 109.49443 * 294.99877 * 3 2 1 6 6 N 1.46930 * 108.89686 * 185.48571 * 5 3 2 7 7 C 1.34780 * 120.62990 * 233.51844 * 6 5 3 8 8 O 1.21611 * 119.99845 * 354.51652 * 7 6 5 9 9 C 1.47420 * 119.99769 * 174.52089 * 7 6 5 10 10 C 1.36089 * 126.44874 * 173.44765 * 9 7 6 11 11 O 1.34256 * 106.95114 * 179.97438 * 10 9 7 12 12 C 1.34050 * 108.22572 * 0.02562 * 11 10 9 13 13 C 1.50702 * 125.37731 * 180.02562 * 12 11 10 14 14 O 1.42900 * 109.46966 * 269.97231 * 13 12 11 15 15 C 1.42899 * 114.00048 * 179.97438 * 14 13 12 16 16 N 1.29936 * 109.24316 * 359.72099 * 12 11 10 17 17 C 1.46922 * 118.73826 * 53.53333 * 6 5 3 18 18 C 1.53200 * 108.77460 * 306.39856 * 17 6 5 19 19 C 1.53028 * 109.31533 * 54.63203 * 18 17 6 20 20 H 1.09003 * 109.46232 * 178.62849 * 19 18 17 21 21 N 1.46502 * 109.45863 * 58.65663 * 19 18 17 22 22 C 1.36940 * 119.99951 * 85.00320 * 21 19 18 23 23 H 1.07994 * 119.99777 * 359.97438 * 22 21 19 24 24 C 1.38814 * 119.99914 * 180.02562 * 22 21 19 25 25 N 1.31617 * 119.99930 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00030 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47229 * 89.99310 * 26 24 22 28 28 H 1.48494 * 109.46855 * 209.99864 * 26 24 22 29 29 H 1.48507 * 109.46803 * 329.99468 * 26 24 22 30 30 H 1.09008 * 109.47150 * 300.00650 * 1 2 3 31 31 H 1.09003 * 109.46824 * 60.00204 * 1 2 3 32 32 H 1.08992 * 109.47422 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47261 * 239.99430 * 2 1 3 34 34 H 1.09006 * 109.46698 * 119.99282 * 2 1 3 35 35 H 1.09001 * 109.59102 * 65.62542 * 5 3 2 36 36 H 1.09005 * 109.58868 * 305.34424 * 5 3 2 37 37 H 1.08005 * 126.52162 * 0.02562 * 10 9 7 38 38 H 1.08999 * 109.47079 * 29.97220 * 13 12 11 39 39 H 1.09001 * 109.47043 * 149.97589 * 13 12 11 40 40 H 1.08999 * 109.46770 * 60.00277 * 15 14 13 41 41 H 1.09004 * 109.47309 * 180.02562 * 15 14 13 42 42 H 1.08998 * 109.47424 * 300.00230 * 15 14 13 43 43 H 1.09000 * 109.58570 * 66.17971 * 17 6 5 44 44 H 1.08996 * 109.58785 * 186.60815 * 17 6 5 45 45 H 1.08997 * 109.49793 * 174.59112 * 18 17 6 46 46 H 1.09001 * 109.49724 * 294.64653 * 18 17 6 47 47 H 0.97002 * 120.00318 * 264.99849 * 21 19 18 48 48 H 0.96999 * 120.00168 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9820 0.8423 5 6 1.6351 2.1279 -1.3088 6 7 2.2417 3.4654 -1.3530 7 6 1.4819 4.5572 -1.5700 8 8 0.3004 4.4338 -1.8303 9 6 2.0830 5.9010 -1.4918 10 6 1.4761 7.0778 -1.8062 11 8 2.3755 8.0514 -1.5924 12 6 3.5101 7.4858 -1.1568 13 6 4.7725 8.2266 -0.7982 14 8 5.6016 8.3432 -1.9562 15 6 6.8307 9.0341 -1.7238 16 7 3.3474 6.1986 -1.0865 17 6 3.6924 3.5899 -1.1564 18 6 4.0745 2.8913 0.1523 19 6 3.5658 1.4483 0.1230 20 1 3.8575 0.9416 1.0430 21 7 4.1479 0.7488 -1.0251 22 6 5.3854 0.1719 -0.9198 23 1 5.9323 0.2328 0.0094 24 6 5.9372 -0.4904 -2.0078 25 7 5.2708 -0.5643 -3.1404 26 14 7.6249 -1.2781 -1.8641 27 1 7.4784 -2.6810 -1.3999 28 1 8.2929 -1.2625 -3.1902 29 1 8.4449 -0.5167 -0.8877 30 1 -0.3634 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 0.5497 2.2173 -1.3539 36 1 1.9886 1.5382 -2.1547 37 1 0.4634 7.2044 -2.1596 38 1 4.5185 9.2211 -0.4315 39 1 5.3072 7.6788 -0.0222 40 1 7.4083 8.5035 -0.9669 41 1 7.4022 9.0808 -2.6509 42 1 6.6191 10.0454 -1.3766 43 1 4.2156 3.1186 -1.9884 44 1 3.9645 4.6439 -1.1010 45 1 5.1589 2.8927 0.2624 46 1 3.6230 3.4197 0.9920 47 1 3.6568 0.6943 -1.8598 48 1 5.6562 -1.0274 -3.9006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037971472.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:35 Heat of formation + Delta-G solvation = -29.271360 kcal Electronic energy + Delta-G solvation = -30524.222981 eV Core-core repulsion = 26389.188467 eV Total energy + Delta-G solvation = -4135.034514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.64866 -39.85854 -38.28364 -37.72421 -35.29370 -34.10005 -33.66070 -31.69531 -31.58524 -29.29395 -28.56416 -28.04711 -26.11065 -25.55246 -23.82288 -23.49753 -23.05560 -21.84878 -20.71051 -19.91751 -18.48044 -17.53216 -17.35333 -17.24875 -16.75612 -16.26341 -16.10935 -15.92480 -15.57216 -14.95715 -14.51610 -14.41282 -13.99383 -13.77580 -13.61936 -13.27184 -13.19930 -13.12907 -12.91572 -12.78423 -12.47999 -12.16474 -11.95844 -11.88658 -11.49205 -11.30295 -11.19778 -10.97739 -10.81606 -10.68793 -10.35050 -10.22598 -10.22121 -10.13121 -10.09380 -9.71112 -9.50337 -9.37779 -9.28194 -8.79644 -8.11592 -6.89263 -5.72619 -3.00237 0.94236 1.71568 2.27504 3.13792 3.36888 3.44641 3.45354 3.50722 3.52232 3.91734 4.49750 4.59012 4.62917 4.75504 4.88501 4.95155 5.04113 5.20755 5.31011 5.35024 5.35065 5.43287 5.47449 5.52598 5.63893 5.72299 5.77200 5.88185 5.93659 5.96820 6.11450 6.18353 6.26168 6.39055 6.44709 6.52583 6.57067 6.62508 6.70061 6.77709 6.88483 6.92557 7.05113 7.16010 7.31738 7.74359 7.79645 8.34444 8.46014 9.57423 10.15417 10.50556 11.50040 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009183 B = 0.003982 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.243399 B = 7030.614524 C = 9399.497543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.577 5.577 7 C 0.594 3.406 8 O -0.553 6.553 9 C -0.058 4.058 10 C 0.016 3.984 11 O -0.191 6.191 12 C 0.190 3.810 13 C 0.160 3.840 14 O -0.383 6.383 15 C 0.033 3.967 16 N -0.425 5.425 17 C 0.072 3.928 18 C -0.141 4.141 19 C 0.176 3.824 20 H 0.048 0.952 21 N -0.718 5.718 22 C -0.234 4.234 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.903 3.097 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.233 0.767 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.136 0.864 45 H 0.071 0.929 46 H 0.044 0.956 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 19.078 6.434 20.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.004 4.004 6 N -0.306 5.306 7 C 0.380 3.620 8 O -0.432 6.432 9 C -0.179 4.179 10 C -0.057 4.057 11 O -0.076 6.076 12 C -0.018 4.018 13 C 0.082 3.918 14 O -0.301 6.301 15 C -0.063 4.063 16 N -0.157 5.157 17 C -0.050 4.050 18 C -0.182 4.182 19 C 0.066 3.934 20 H 0.066 0.934 21 N -0.361 5.361 22 C -0.365 4.365 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.219 1.219 28 H -0.220 1.220 29 H -0.209 1.209 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.249 0.751 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.152 0.848 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.218 0.782 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.386 18.469 6.359 20.020 hybrid contribution 0.535 -0.064 -0.291 0.612 sum -3.851 18.405 6.069 19.759 Atomic orbital electron populations 1.21856 0.96862 1.01011 1.01324 1.21412 0.94212 0.95740 1.03390 1.21737 0.97609 0.96016 0.96793 0.91698 1.21754 0.98590 0.81523 0.98569 1.47959 1.09516 1.05786 1.67373 1.16781 0.85267 0.82142 0.77788 1.90776 1.15293 1.86121 1.51057 1.21933 0.91200 0.96208 1.08513 1.25308 0.95740 0.84718 0.99975 1.84367 1.21312 1.38396 1.63524 1.25903 0.88433 0.88011 0.99476 1.20551 0.83731 0.98617 0.88856 1.87981 1.31520 1.78267 1.32367 1.22840 0.85004 0.95391 1.03103 1.70558 1.15877 1.11589 1.17697 1.22854 0.77540 1.05715 0.98895 1.22413 1.01429 0.98467 0.95926 1.20273 0.89628 0.91075 0.92428 0.93366 1.42464 1.19083 1.63805 1.10702 1.19219 0.93664 1.26578 0.97057 0.91325 1.24684 0.98484 1.01639 0.96026 1.69650 1.38101 1.48096 1.02301 0.86247 0.84381 0.79316 0.76578 1.21909 1.21958 1.20900 0.93421 0.92769 0.93169 0.90454 0.92024 0.89661 0.90551 0.75061 0.89974 0.88239 0.93143 0.88854 0.93592 0.90671 0.84751 0.91072 0.93724 0.78156 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.67 37.15 0.36 -1.79 16 2 C -0.11 -1.82 5.20 -26.73 -0.14 -1.95 16 3 C -0.10 -1.75 2.14 -90.49 -0.19 -1.94 16 4 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 5 C 0.12 2.12 5.00 -3.71 -0.02 2.10 16 6 N -0.58 -10.46 2.97 -174.03 -0.52 -10.97 16 7 C 0.59 10.46 7.68 -12.52 -0.10 10.36 16 8 O -0.55 -10.53 16.33 5.27 0.09 -10.45 16 9 C -0.06 -0.88 6.72 -83.02 -0.56 -1.43 16 10 C 0.02 0.19 11.95 29.96 0.36 0.55 16 11 O -0.19 -2.17 10.73 6.51 0.07 -2.10 16 12 C 0.19 2.26 7.93 -13.08 -0.10 2.16 16 13 C 0.16 1.34 6.56 36.01 0.24 1.58 16 14 O -0.38 -3.92 10.69 -35.23 -0.38 -4.30 16 15 C 0.03 0.21 11.01 101.05 1.11 1.32 16 16 N -0.43 -6.19 7.73 -7.65 -0.06 -6.25 16 17 C 0.07 1.33 6.07 -3.71 -0.02 1.30 16 18 C -0.14 -2.58 5.78 -26.61 -0.15 -2.73 16 19 C 0.18 3.46 2.54 -67.88 -0.17 3.29 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -17.15 3.71 -53.37 -0.20 -17.34 16 22 C -0.23 -6.27 9.93 -15.06 -0.15 -6.42 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 26 Si 0.90 22.22 29.55 -169.99 -5.02 17.20 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 31 H 0.05 0.76 6.70 -51.93 -0.35 0.41 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.48 7.69 -51.93 -0.40 1.08 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.50 5.76 -51.93 -0.30 1.20 16 36 H 0.08 1.53 6.65 -51.93 -0.35 1.18 16 37 H 0.23 1.94 8.06 -52.48 -0.42 1.52 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.07 1.63 7.74 -51.93 -0.40 1.23 16 44 H 0.14 2.36 3.66 -77.13 -0.28 2.08 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.38 9.84 5.94 -40.82 -0.24 9.59 16 48 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 385.76 15.07 5.81 5.81 Total: -1.00 -32.85 385.76 -6.48 -39.33 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.36 Total: 10.13 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 0.36 Total: 5.95 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.05 Total: -61.57 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.22 Total: -16.85 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.85 -6.48 -39.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037971472.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.055 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds