Wall clock time and date at job start Tue Mar 31 2020 20:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47027 * 2 1 4 4 H 1.09009 * 109.49812 * 304.93546 * 3 2 1 5 5 C 1.53189 * 109.50054 * 65.00077 * 3 2 1 6 6 N 1.46922 * 108.77657 * 174.58547 * 5 3 2 7 7 C 1.34780 * 120.62880 * 126.36672 * 6 5 3 8 8 O 1.21608 * 120.00137 * 352.89197 * 7 6 5 9 9 C 1.47424 * 119.99473 * 172.89060 * 7 6 5 10 10 C 1.36094 * 126.44392 * 172.81429 * 9 7 6 11 11 O 1.34261 * 106.94891 * 179.84240 * 10 9 7 12 12 C 1.34050 * 108.22616 * 0.42275 * 11 10 9 13 13 C 1.50690 * 125.38181 * 179.69510 * 12 11 10 14 14 O 1.42900 * 109.47462 * 270.04208 * 13 12 11 15 15 C 1.42903 * 114.00240 * 179.97438 * 14 13 12 16 16 N 1.29942 * 109.24024 * 359.73088 * 12 11 10 17 17 C 1.46928 * 118.73852 * 306.39357 * 6 5 3 18 18 C 1.53192 * 108.77793 * 53.60761 * 17 6 5 19 19 C 1.53036 * 109.49704 * 184.84152 * 3 2 1 20 20 H 1.09000 * 109.46323 * 58.65797 * 19 3 2 21 21 N 1.46501 * 109.46054 * 298.70207 * 19 3 2 22 22 C 1.36936 * 120.00296 * 154.93224 * 21 19 3 23 23 H 1.07999 * 119.99920 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99797 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00317 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99842 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47374 * 59.99956 * 26 24 22 28 28 H 1.48500 * 109.47468 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47039 * 300.00068 * 26 24 22 30 30 H 1.09006 * 109.46666 * 300.00419 * 1 2 3 31 31 H 1.08996 * 109.47160 * 59.99953 * 1 2 3 32 32 H 1.08992 * 109.47032 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46917 * 240.00096 * 2 1 3 34 34 H 1.08998 * 109.46896 * 119.99581 * 2 1 3 35 35 H 1.08997 * 109.58438 * 54.79957 * 5 3 2 36 36 H 1.09004 * 109.58436 * 294.37458 * 5 3 2 37 37 H 1.08004 * 126.52994 * 0.02562 * 10 9 7 38 38 H 1.09007 * 109.46792 * 30.04208 * 13 12 11 39 39 H 1.08999 * 109.47548 * 150.03892 * 13 12 11 40 40 H 1.09006 * 109.46844 * 299.99968 * 15 14 13 41 41 H 1.08994 * 109.47063 * 59.99979 * 15 14 13 42 42 H 1.08998 * 109.47154 * 180.02562 * 15 14 13 43 43 H 1.08993 * 109.58465 * 293.81416 * 17 6 5 44 44 H 1.09001 * 109.69808 * 173.46544 * 17 6 5 45 45 H 1.09001 * 109.49801 * 65.31763 * 18 17 6 46 46 H 1.08993 * 109.49644 * 185.41432 * 18 17 6 47 47 H 0.96999 * 119.99445 * 334.93339 * 21 19 3 48 48 H 0.96996 * 119.99920 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 -0.8424 5 6 1.6351 2.1281 1.3087 6 7 2.2416 3.4657 1.3493 7 6 1.4815 4.5580 1.5627 8 8 0.2699 4.4589 1.5951 9 6 2.1191 5.8730 1.7570 10 6 1.4848 7.0739 1.8445 11 8 2.4346 8.0061 2.0226 12 6 3.6267 7.3931 2.0346 13 6 4.9583 8.0779 2.2039 14 8 5.4704 8.4471 0.9219 15 6 6.7366 9.1078 0.9702 16 7 3.4526 6.1151 1.8766 17 6 3.6923 3.5899 1.1521 18 6 4.0742 2.8880 -0.1549 19 6 3.5655 1.4449 -0.1218 20 1 3.8574 0.9359 -1.0403 21 7 4.1480 0.7485 1.0280 22 6 5.3855 0.1715 0.9240 23 1 5.9320 0.2295 -0.0057 24 6 5.9371 -0.4888 2.0133 25 7 5.2706 -0.5608 3.1460 26 14 7.6250 -1.2766 1.8713 27 1 8.6301 -0.2363 1.5357 28 1 7.9841 -1.9140 3.1635 29 1 7.6022 -2.3062 0.8014 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9909 1.5398 2.1546 36 1 0.5497 2.2174 1.3538 37 1 0.4200 7.2444 1.7854 38 1 4.8322 8.9711 2.8159 39 1 5.6568 7.3985 2.6923 40 1 6.6471 10.0225 1.5564 41 1 7.4722 8.4501 1.4331 42 1 7.0561 9.3553 -0.0421 43 1 4.2157 3.1209 1.9852 44 1 3.9664 4.6433 1.0948 45 1 3.6220 3.4138 -0.9959 46 1 5.1585 2.8891 -0.2651 47 1 3.6571 0.6962 1.8629 48 1 5.6559 -1.0225 3.9070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037971474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:39 Heat of formation + Delta-G solvation = -31.007642 kcal Electronic energy + Delta-G solvation = -30510.536918 eV Core-core repulsion = 26375.427113 eV Total energy + Delta-G solvation = -4135.109805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.62014 -39.86764 -38.27234 -37.72617 -35.25087 -34.10974 -33.66456 -31.68080 -31.59141 -29.31125 -28.56780 -28.03140 -26.09817 -25.54838 -23.81955 -23.48930 -23.06031 -21.79332 -20.71209 -19.90535 -18.51991 -17.46322 -17.36116 -17.26099 -16.73743 -16.25486 -16.10531 -15.90990 -15.57211 -14.98799 -14.53609 -14.36014 -13.97538 -13.78958 -13.61578 -13.29620 -13.18530 -13.09921 -12.88162 -12.75963 -12.48047 -12.19207 -11.95782 -11.84098 -11.46392 -11.31473 -11.15926 -10.98032 -10.80746 -10.69008 -10.36460 -10.22498 -10.21631 -10.15673 -10.11883 -9.71131 -9.53993 -9.43795 -9.26836 -8.81492 -8.12503 -6.90197 -5.73239 -3.00878 0.95369 1.74489 2.29846 3.14273 3.37452 3.44083 3.45289 3.50342 3.50713 3.94115 4.51815 4.59912 4.62319 4.77802 4.91053 4.96231 5.05396 5.21643 5.33367 5.34375 5.34990 5.43679 5.48829 5.57074 5.63551 5.72450 5.76565 5.88755 5.91296 5.96380 6.09974 6.17940 6.25508 6.38826 6.44806 6.51587 6.57340 6.60474 6.68989 6.75306 6.88416 6.89959 7.04792 7.12968 7.32305 7.73487 7.77986 8.33832 8.45402 9.56808 10.14550 10.49943 11.49312 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.003973 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.262610 B = 7046.031068 C = 9344.634121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.118 3.882 6 N -0.579 5.579 7 C 0.594 3.406 8 O -0.553 6.553 9 C -0.060 4.060 10 C 0.016 3.984 11 O -0.191 6.191 12 C 0.188 3.812 13 C 0.160 3.840 14 O -0.384 6.384 15 C 0.033 3.967 16 N -0.425 5.425 17 C 0.089 3.911 18 C -0.148 4.148 19 C 0.177 3.823 20 H 0.049 0.951 21 N -0.718 5.718 22 C -0.234 4.234 23 H 0.068 0.932 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.287 1.287 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.233 0.767 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.121 0.879 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 18.500 -3.134 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.004 4.004 6 N -0.308 5.308 7 C 0.381 3.619 8 O -0.432 6.432 9 C -0.180 4.180 10 C -0.058 4.058 11 O -0.077 6.077 12 C -0.020 4.020 13 C 0.083 3.917 14 O -0.303 6.303 15 C -0.063 4.063 16 N -0.157 5.157 17 C -0.033 4.033 18 C -0.189 4.189 19 C 0.067 3.933 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.366 4.366 23 H 0.086 0.914 24 C -0.208 4.208 25 N -0.582 5.582 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.219 1.219 29 H -0.214 1.214 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.249 0.751 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.138 0.862 45 H 0.062 0.938 46 H 0.091 0.909 47 H 0.218 0.782 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.998 17.903 -3.331 18.644 hybrid contribution 0.562 -0.020 0.452 0.721 sum -3.437 17.883 -2.880 18.436 Atomic orbital electron populations 1.21855 0.96848 1.00979 1.01354 1.21418 0.94232 0.95752 1.03373 1.21738 0.97517 0.96052 0.96895 0.91594 1.21769 0.98702 0.81356 0.98600 1.47960 1.09578 1.05824 1.67445 1.16778 0.85692 0.81972 0.77439 1.90772 1.12956 1.85442 1.54063 1.21925 0.89161 0.96130 1.10790 1.25306 0.95039 0.85703 0.99774 1.84364 1.16181 1.39017 1.68119 1.25858 0.87078 0.87191 1.01870 1.20551 0.85670 0.98668 0.86849 1.87960 1.36909 1.78507 1.26879 1.22836 0.84062 0.95902 1.03546 1.70805 1.16118 1.13664 1.15105 1.22543 0.77656 1.04227 0.98881 1.22509 1.01593 0.98815 0.95958 1.20249 0.89667 0.90937 0.92460 0.93306 1.42448 1.19050 1.63939 1.10555 1.19177 0.93672 1.26719 0.96998 0.91373 1.24676 0.98464 1.01602 0.96029 1.69640 1.38113 1.48188 1.02243 0.86325 0.84516 0.79176 0.76482 1.21431 1.21865 1.21435 0.92795 0.93377 0.93192 0.92030 0.90475 0.90496 0.89550 0.75111 0.89966 0.88148 0.93585 0.93110 0.88923 0.90249 0.86173 0.93773 0.90908 0.78150 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.67 37.16 0.36 -1.79 16 2 C -0.11 -1.82 5.19 -26.73 -0.14 -1.96 16 3 C -0.10 -1.76 2.14 -90.50 -0.19 -1.96 16 4 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 5 C 0.12 2.11 5.04 -3.71 -0.02 2.09 16 6 N -0.58 -10.44 2.97 -174.04 -0.52 -10.96 16 7 C 0.59 10.47 7.67 -12.52 -0.10 10.37 16 8 O -0.55 -10.48 16.32 5.27 0.09 -10.39 16 9 C -0.06 -0.91 6.67 -83.02 -0.55 -1.46 16 10 C 0.02 0.19 11.95 29.96 0.36 0.54 16 11 O -0.19 -2.22 10.73 6.50 0.07 -2.15 16 12 C 0.19 2.31 7.93 -13.08 -0.10 2.20 16 13 C 0.16 1.41 6.56 36.00 0.24 1.65 16 14 O -0.38 -3.90 10.69 -35.23 -0.38 -4.28 16 15 C 0.03 0.20 11.01 101.05 1.11 1.32 16 16 N -0.42 -6.35 7.83 -7.66 -0.06 -6.41 16 17 C 0.09 1.64 5.84 -3.71 -0.02 1.61 16 18 C -0.15 -2.72 5.78 -26.61 -0.15 -2.88 16 19 C 0.18 3.49 2.53 -67.89 -0.17 3.32 16 20 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 21 N -0.72 -17.04 3.72 -53.39 -0.20 -17.24 16 22 C -0.23 -6.25 9.93 -15.06 -0.15 -6.40 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 26 Si 0.90 22.09 29.55 -169.99 -5.02 17.06 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H 0.05 0.76 6.70 -51.93 -0.35 0.41 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 35 H 0.08 1.51 6.64 -51.93 -0.34 1.17 16 36 H 0.09 1.51 5.72 -51.93 -0.30 1.22 16 37 H 0.23 1.95 8.06 -52.48 -0.42 1.53 16 38 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.70 7.74 -51.93 -0.40 1.30 16 44 H 0.12 2.12 4.12 -60.01 -0.25 1.88 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.38 9.75 5.94 -40.82 -0.24 9.51 16 48 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -32.45 385.98 -6.43 -38.88 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.32 Total: 10.22 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 0.37 Total: 6.23 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.05 Total: -61.38 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.22 Total: -16.82 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.45 -6.43 -38.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037971474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.869 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds