Wall clock time and date at job start Tue Mar 31 2020 20:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46879 * 2 1 4 4 H 1.08997 * 109.52556 * 305.08133 * 3 2 1 5 5 C 1.53197 * 109.49927 * 65.16415 * 3 2 1 6 6 N 1.46924 * 108.77540 * 174.58650 * 5 3 2 7 7 C 1.34777 * 120.63032 * 126.36681 * 6 5 3 8 8 O 1.21615 * 120.00068 * 352.84681 * 7 6 5 9 9 C 1.47422 * 119.99763 * 172.84365 * 7 6 5 10 10 C 1.36091 * 126.44477 * 172.75722 * 9 7 6 11 11 O 1.34262 * 106.94545 * 179.97438 * 10 9 7 12 12 C 1.34047 * 108.22815 * 359.97438 * 11 10 9 13 13 C 1.50701 * 125.37818 * 179.97438 * 12 11 10 14 14 O 1.42899 * 109.46905 * 270.02474 * 13 12 11 15 15 C 1.42899 * 113.99787 * 180.02562 * 14 13 12 16 16 N 1.29936 * 109.24445 * 359.74405 * 12 11 10 17 17 C 1.46926 * 118.73645 * 306.38848 * 6 5 3 18 18 C 1.53193 * 108.77649 * 53.61087 * 17 6 5 19 19 C 1.53035 * 109.31240 * 305.36225 * 18 17 6 20 20 H 1.09001 * 109.44998 * 301.35672 * 19 18 17 21 21 N 1.46499 * 109.45945 * 181.38684 * 19 18 17 22 22 C 1.36933 * 120.00062 * 84.93669 * 21 19 18 23 23 H 1.07998 * 119.99973 * 359.97438 * 22 21 19 24 24 C 1.38814 * 120.00318 * 180.02562 * 22 21 19 25 25 N 1.31617 * 119.99650 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00210 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47035 * 180.02562 * 26 24 22 28 28 H 1.48502 * 109.46855 * 299.99596 * 26 24 22 29 29 H 1.48498 * 109.47193 * 59.99997 * 26 24 22 30 30 H 1.09003 * 109.46911 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47185 * 299.99621 * 1 2 3 32 32 H 1.08997 * 109.46972 * 60.00296 * 1 2 3 33 33 H 1.08998 * 109.46925 * 239.99896 * 2 1 3 34 34 H 1.08997 * 109.46972 * 119.99704 * 2 1 3 35 35 H 1.09005 * 109.57914 * 294.36993 * 5 3 2 36 36 H 1.08996 * 109.58740 * 54.64965 * 5 3 2 37 37 H 1.08000 * 126.53034 * 0.02562 * 10 9 7 38 38 H 1.09002 * 109.46737 * 30.02229 * 13 12 11 39 39 H 1.09001 * 109.47382 * 150.02091 * 13 12 11 40 40 H 1.08995 * 109.46883 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.46945 * 299.99727 * 15 14 13 42 42 H 1.08997 * 109.47595 * 59.99725 * 15 14 13 43 43 H 1.09007 * 109.58269 * 173.39921 * 17 6 5 44 44 H 1.09001 * 109.58676 * 293.67920 * 17 6 5 45 45 H 1.08996 * 109.49251 * 185.41249 * 18 17 6 46 46 H 1.08994 * 109.49762 * 65.31533 * 18 17 6 47 47 H 0.96995 * 119.99759 * 264.92892 * 21 19 18 48 48 H 0.97001 * 120.00159 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6385 2.1268 1.3106 6 7 2.2450 3.4644 1.3507 7 6 1.4855 4.5565 1.5672 8 8 0.2739 4.4575 1.6020 9 6 2.1236 5.8712 1.7620 10 6 1.4897 7.0721 1.8515 11 8 2.4401 8.0042 2.0264 12 6 3.6315 7.3900 2.0447 13 6 4.9631 8.0737 2.2190 14 8 5.4814 8.4404 0.9388 15 6 6.7486 9.0988 0.9918 16 7 3.4564 6.1114 1.8931 17 6 3.6952 3.5888 1.1498 18 6 4.0736 2.8881 -0.1589 19 6 3.5652 1.4451 -0.1257 20 1 4.0008 0.9263 0.7283 21 7 3.9542 0.7621 -1.3620 22 6 5.1923 0.1863 -1.4657 23 1 5.8821 0.2361 -0.6363 24 6 5.5611 -0.4604 -2.6374 25 7 4.7205 -0.5206 -3.6484 26 14 7.2503 -1.2452 -2.7791 27 1 7.3966 -1.8662 -4.1201 28 1 8.2956 -0.2059 -2.5987 29 1 7.4016 -2.2867 -1.7315 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5532 2.2161 1.3585 36 1 1.9942 1.5364 2.1549 37 1 0.4249 7.2429 1.7938 38 1 4.8351 8.9680 2.8289 39 1 5.6586 7.3943 2.7117 40 1 7.0729 9.3444 -0.0194 41 1 6.6582 10.0143 1.5764 42 1 7.4810 8.4404 1.4588 43 1 3.9669 4.6429 1.0919 44 1 4.2208 3.1212 1.9824 45 1 5.1577 2.8895 -0.2718 46 1 3.6192 3.4148 -0.9980 47 1 3.3347 0.7176 -2.1070 48 1 4.9780 -0.9728 -4.4670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037971476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:42 Heat of formation + Delta-G solvation = -33.456220 kcal Electronic energy + Delta-G solvation = -30047.762689 eV Core-core repulsion = 25912.546706 eV Total energy + Delta-G solvation = -4135.215983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.73958 -39.95747 -38.34471 -37.72111 -35.39052 -34.45174 -33.66775 -31.78189 -31.63951 -29.39450 -28.79092 -28.11522 -26.15828 -25.55709 -23.95170 -23.55164 -22.42323 -21.91088 -20.74560 -20.02246 -19.29044 -17.67106 -17.51137 -17.06257 -16.88801 -16.35062 -16.20807 -16.00949 -15.69555 -15.04678 -14.83233 -14.24464 -13.97311 -13.79680 -13.61760 -13.36246 -13.24067 -13.14476 -12.97142 -12.83618 -12.60951 -12.14716 -12.03508 -11.96827 -11.57734 -11.52412 -11.22110 -10.93772 -10.85300 -10.66026 -10.39947 -10.33126 -10.27909 -10.19044 -10.10183 -9.86386 -9.58123 -9.51937 -9.38236 -8.80897 -8.38538 -6.89984 -5.72764 -3.00857 0.84316 1.60942 2.19118 2.96922 3.23696 3.31634 3.45696 3.50278 3.51135 3.83195 4.41564 4.44530 4.61961 4.66970 4.79516 4.90019 4.98247 5.15719 5.22014 5.27653 5.30858 5.35797 5.42107 5.46631 5.56881 5.65918 5.68699 5.70666 5.78103 5.92340 6.00424 6.17488 6.20779 6.32949 6.44356 6.46874 6.50500 6.52991 6.54278 6.67998 6.79490 6.93019 7.02377 7.15850 7.18185 7.56318 7.72922 8.16660 8.45675 9.56858 10.15195 10.50437 11.49824 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009719 B = 0.003453 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.223623 B = 8106.772171 C =10607.486033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.118 3.882 6 N -0.585 5.585 7 C 0.598 3.402 8 O -0.547 6.547 9 C -0.063 4.063 10 C 0.020 3.980 11 O -0.190 6.190 12 C 0.190 3.810 13 C 0.160 3.840 14 O -0.383 6.383 15 C 0.033 3.967 16 N -0.429 5.429 17 C 0.082 3.918 18 C -0.148 4.148 19 C 0.182 3.818 20 H 0.047 0.953 21 N -0.720 5.720 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.292 1.292 28 H -0.287 1.287 29 H -0.287 1.287 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.234 0.766 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.126 0.874 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.616 18.568 14.673 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.315 5.315 7 C 0.385 3.615 8 O -0.426 6.426 9 C -0.183 4.183 10 C -0.054 4.054 11 O -0.075 6.075 12 C -0.018 4.018 13 C 0.082 3.918 14 O -0.301 6.301 15 C -0.063 4.063 16 N -0.162 5.162 17 C -0.040 4.040 18 C -0.189 4.189 19 C 0.072 3.928 20 H 0.065 0.935 21 N -0.361 5.361 22 C -0.367 4.367 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.214 1.214 29 H -0.213 1.213 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.250 0.750 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.143 0.857 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.649 17.966 14.516 23.249 hybrid contribution 0.479 0.035 -0.300 0.567 sum -2.170 18.001 14.216 23.040 Atomic orbital electron populations 1.21844 0.96832 1.00987 1.01310 1.21451 0.94343 0.95695 1.03471 1.21772 0.97800 0.96193 0.96589 0.91192 1.21826 0.99365 0.81141 0.98087 1.47965 1.09421 1.06041 1.68039 1.16773 0.85693 0.81924 0.77153 1.90792 1.12907 1.85336 1.53538 1.21880 0.89200 0.96129 1.11093 1.25337 0.95095 0.85664 0.99320 1.84376 1.16163 1.38942 1.68044 1.25851 0.87168 0.87077 1.01679 1.20548 0.85511 0.98664 0.87036 1.87986 1.36798 1.78634 1.26708 1.22845 0.83908 0.95873 1.03714 1.70738 1.16079 1.13884 1.15451 1.22677 0.77987 1.05267 0.98116 1.22644 1.02019 0.98795 0.95487 1.20223 0.90685 0.90808 0.91075 0.93515 1.42401 1.16388 1.64547 1.12742 1.19181 0.91800 1.27195 0.98561 0.91323 1.24708 0.98069 1.01658 0.96435 1.69650 1.35255 1.48504 1.04746 0.86308 0.84278 0.79163 0.76672 1.21798 1.21375 1.21347 0.93197 0.93233 0.92977 0.89762 0.92469 0.89105 0.91423 0.75025 0.89943 0.88278 0.88791 0.93561 0.93158 0.85675 0.92035 0.90711 0.92581 0.78254 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.67 37.16 0.36 -1.82 16 2 C -0.11 -1.87 5.31 -26.73 -0.14 -2.01 16 3 C -0.10 -1.80 1.92 -90.50 -0.17 -1.97 16 4 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 5 C 0.12 1.84 5.34 -3.71 -0.02 1.82 16 6 N -0.58 -9.31 2.97 -174.03 -0.52 -9.83 16 7 C 0.60 9.55 7.67 -12.52 -0.10 9.46 16 8 O -0.55 -9.64 16.32 5.26 0.09 -9.55 16 9 C -0.06 -0.86 6.66 -83.02 -0.55 -1.41 16 10 C 0.02 0.21 11.95 29.96 0.36 0.57 16 11 O -0.19 -2.00 10.73 6.51 0.07 -1.93 16 12 C 0.19 2.08 7.93 -13.08 -0.10 1.97 16 13 C 0.16 1.20 6.56 36.01 0.24 1.44 16 14 O -0.38 -3.64 10.69 -35.23 -0.38 -4.02 16 15 C 0.03 0.19 11.01 101.05 1.11 1.30 16 16 N -0.43 -5.66 7.85 -7.65 -0.06 -5.72 16 17 C 0.08 1.29 6.09 -3.71 -0.02 1.27 16 18 C -0.15 -2.75 5.66 -26.61 -0.15 -2.91 16 19 C 0.18 3.63 2.19 -67.89 -0.15 3.48 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -17.77 4.33 -53.39 -0.23 -18.00 16 22 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 26 Si 0.90 22.34 29.55 -169.99 -5.02 17.31 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.68 7.22 -51.93 -0.37 1.30 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.42 5.72 -51.93 -0.30 1.13 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.23 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.13 1.95 4.14 -58.94 -0.24 1.70 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.38 10.19 7.51 -40.82 -0.31 9.89 16 48 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -33.43 389.63 -6.50 -39.93 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -7.45 Total: 9.18 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 0.41 Total: 4.11 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.08 Total: -60.91 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.22 Total: -15.50 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.43 -6.50 -39.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037971476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.478 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds