Wall clock time and date at job start Tue Mar 31 2020 20:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46784 * 2 1 4 4 H 1.09000 * 109.49480 * 54.93926 * 3 2 1 5 5 C 1.53185 * 109.52979 * 294.85869 * 3 2 1 6 6 N 1.46921 * 108.78043 * 185.39877 * 5 3 2 7 7 C 1.34777 * 120.63169 * 233.62998 * 6 5 3 8 8 O 1.21609 * 119.99922 * 353.90351 * 7 6 5 9 9 C 1.47424 * 120.00075 * 173.90067 * 7 6 5 10 10 C 1.36092 * 126.44674 * 173.07565 * 9 7 6 11 11 O 1.34250 * 106.94807 * 179.90207 * 10 9 7 12 12 C 1.34049 * 108.23005 * 0.36191 * 11 10 9 13 13 C 1.50703 * 125.38355 * 179.72950 * 12 11 10 14 14 O 1.42899 * 109.47247 * 270.05061 * 13 12 11 15 15 C 1.42901 * 114.00028 * 180.02562 * 14 13 12 16 16 N 1.29937 * 109.23902 * 359.77164 * 12 11 10 17 17 C 1.46927 * 118.74058 * 53.60281 * 6 5 3 18 18 C 1.53192 * 108.77416 * 306.39664 * 17 6 5 19 19 C 1.53039 * 109.31421 * 54.63551 * 18 17 6 20 20 H 1.09001 * 109.44831 * 58.64881 * 19 18 17 21 21 N 1.46504 * 109.46071 * 178.61619 * 19 18 17 22 22 C 1.36943 * 119.99653 * 275.06330 * 21 19 18 23 23 H 1.07996 * 119.99782 * 0.02562 * 22 21 19 24 24 C 1.38810 * 119.99559 * 179.97438 * 22 21 19 25 25 N 1.31626 * 119.99300 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00457 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.46882 * 89.99532 * 26 24 22 28 28 H 1.48502 * 109.46670 * 329.99782 * 26 24 22 29 29 H 1.48499 * 109.47008 * 209.99702 * 26 24 22 30 30 H 1.09006 * 109.46680 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47358 * 299.99171 * 1 2 3 32 32 H 1.08995 * 109.47269 * 60.00073 * 1 2 3 33 33 H 1.09003 * 109.47351 * 240.01083 * 2 1 3 34 34 H 1.09002 * 109.47577 * 120.00123 * 2 1 3 35 35 H 1.09007 * 109.58548 * 305.18232 * 5 3 2 36 36 H 1.08998 * 109.58614 * 65.46257 * 5 3 2 37 37 H 1.08003 * 126.52598 * 0.03776 * 10 9 7 38 38 H 1.09004 * 109.46553 * 30.04561 * 13 12 11 39 39 H 1.08992 * 109.46674 * 150.04579 * 13 12 11 40 40 H 1.09002 * 109.47159 * 59.99069 * 15 14 13 41 41 H 1.08993 * 109.47103 * 179.97438 * 15 14 13 42 42 H 1.09003 * 109.46613 * 300.00046 * 15 14 13 43 43 H 1.09002 * 109.58540 * 66.18082 * 17 6 5 44 44 H 1.08999 * 109.58805 * 186.46732 * 17 6 5 45 45 H 1.09002 * 109.50197 * 294.68119 * 18 17 6 46 46 H 1.09006 * 109.49666 * 174.58740 * 18 17 6 47 47 H 0.96998 * 120.00465 * 95.06471 * 21 19 18 48 48 H 0.97004 * 119.99106 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9822 0.8411 5 6 1.6384 2.1276 -1.3100 6 7 2.2448 3.4653 -1.3494 7 6 1.4853 4.5575 -1.5653 8 8 0.3069 4.4342 -1.8395 9 6 2.0829 5.9017 -1.4689 10 6 1.4794 7.0795 -1.7864 11 8 2.3729 8.0532 -1.5501 12 6 3.5031 7.4863 -1.1049 13 6 4.7605 8.2262 -0.7273 14 8 5.6020 8.3525 -1.8753 15 6 6.8280 9.0424 -1.6243 16 7 3.3435 6.1979 -1.0514 17 6 3.6949 3.5897 -1.1485 18 6 4.0734 2.8883 0.1598 19 6 3.5652 1.4452 0.1257 20 1 4.0009 0.9270 -0.7285 21 7 3.9542 0.7614 1.3617 22 6 5.1924 0.1857 1.4650 23 1 5.8822 0.2361 0.6356 24 6 5.5611 -0.4617 2.6363 25 7 6.7515 -1.0146 2.7357 26 14 4.3682 -0.5481 4.0711 27 1 3.5360 -1.7720 3.9498 28 1 3.4911 0.6501 4.0584 29 1 5.1292 -0.5912 5.3456 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 1.9964 1.5391 -2.1548 36 1 0.5530 2.2146 -1.3591 37 1 0.4726 7.2067 -2.1559 38 1 4.5009 9.2178 -0.3562 39 1 5.2874 7.6736 0.0505 40 1 7.3977 8.5063 -0.8651 41 1 7.4097 9.0958 -2.5444 42 1 6.6117 10.0508 -1.2715 43 1 4.2206 3.1204 -1.9801 44 1 3.9669 4.6438 -1.0924 45 1 3.6190 3.4143 0.9994 46 1 5.1576 2.8896 0.2728 47 1 3.3347 0.7165 2.1068 48 1 7.0090 -1.4673 3.5541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037971479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:45 Heat of formation + Delta-G solvation = -27.932579 kcal Electronic energy + Delta-G solvation = -30172.136921 eV Core-core repulsion = 26037.160460 eV Total energy + Delta-G solvation = -4134.976460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.78326 -40.03250 -38.35978 -37.84889 -35.46762 -34.56440 -33.78807 -31.81384 -31.70982 -29.79966 -28.99507 -28.17003 -26.18890 -25.68816 -24.01108 -23.58409 -22.19861 -21.98655 -20.76488 -20.12570 -19.45992 -17.80242 -17.57075 -17.40950 -16.95049 -16.35938 -16.23330 -16.03986 -15.75196 -15.08400 -14.83836 -14.43158 -14.08170 -13.99551 -13.63772 -13.41320 -13.29681 -13.22511 -12.89374 -12.85432 -12.62759 -12.40334 -12.22565 -12.01468 -11.74753 -11.57838 -11.35972 -11.15900 -10.96659 -10.75164 -10.48755 -10.38073 -10.30623 -10.26812 -10.19955 -9.76381 -9.62005 -9.53703 -9.42069 -8.84396 -8.45577 -7.22190 -5.75342 -3.09845 0.80827 1.56618 2.15533 2.93405 3.16994 3.28698 3.38273 3.41783 3.46190 3.81294 4.39276 4.41524 4.60610 4.66380 4.79637 4.90096 4.98387 5.03614 5.09109 5.18690 5.25369 5.28725 5.33526 5.35764 5.43133 5.53803 5.59565 5.64370 5.68291 5.80622 5.89437 6.04472 6.07196 6.17187 6.30114 6.34653 6.40795 6.44639 6.48819 6.58040 6.72268 6.75918 6.91655 7.05527 7.15517 7.51643 8.01614 8.11125 8.44149 9.22866 9.95758 10.16314 11.43222 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.003507 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.096228 B = 7982.018555 C =10013.833640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.584 5.584 7 C 0.598 3.402 8 O -0.548 6.548 9 C -0.063 4.063 10 C 0.020 3.980 11 O -0.189 6.189 12 C 0.195 3.805 13 C 0.158 3.842 14 O -0.385 6.385 15 C 0.032 3.968 16 N -0.428 5.428 17 C 0.064 3.936 18 C -0.142 4.142 19 C 0.186 3.814 20 H 0.056 0.944 21 N -0.746 5.746 22 C -0.238 4.238 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.935 5.935 26 Si 0.881 3.119 27 H -0.284 1.284 28 H -0.278 1.278 29 H -0.292 1.292 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.059 0.941 44 H 0.143 0.857 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.360 0.640 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 20.405 -9.553 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.314 5.314 7 C 0.385 3.615 8 O -0.427 6.427 9 C -0.183 4.183 10 C -0.054 4.054 11 O -0.075 6.075 12 C -0.014 4.014 13 C 0.081 3.919 14 O -0.303 6.303 15 C -0.064 4.064 16 N -0.160 5.160 17 C -0.059 4.059 18 C -0.183 4.183 19 C 0.076 3.924 20 H 0.074 0.926 21 N -0.387 5.387 22 C -0.368 4.368 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.583 5.583 26 Si 0.711 3.289 27 H -0.211 1.211 28 H -0.204 1.204 29 H -0.219 1.219 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.250 0.750 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.160 0.840 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.193 0.807 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.498 19.769 -9.713 23.268 hybrid contribution -1.054 0.319 1.231 1.652 sum -8.552 20.088 -8.483 23.423 Atomic orbital electron populations 1.21859 0.96658 1.01180 1.01437 1.21462 0.94506 0.95681 1.03439 1.21823 0.97853 0.96183 0.96904 0.91335 1.21786 0.99333 0.81350 0.97837 1.47972 1.09399 1.05909 1.68145 1.16775 0.85172 0.82137 0.77414 1.90790 1.15423 1.86136 1.50314 1.21879 0.91534 0.96106 1.08770 1.25325 0.95807 0.84696 0.99602 1.84380 1.21819 1.38317 1.62935 1.25899 0.88433 0.87848 0.99170 1.20585 0.83612 0.98796 0.88932 1.87952 1.31328 1.78432 1.32564 1.22850 0.84996 0.95516 1.03015 1.70481 1.15897 1.11846 1.17748 1.23008 0.77813 1.06939 0.98100 1.22513 1.02273 0.97918 0.95618 1.20222 0.90548 0.91108 0.90478 0.92620 1.42785 1.16522 1.66388 1.13049 1.19069 0.90622 1.26693 1.00419 0.89207 1.24637 0.96409 1.00428 0.97598 1.69705 1.19303 1.41800 1.27522 0.86602 0.81007 0.77796 0.83456 1.21107 1.20402 1.21863 0.93026 0.93101 0.92910 0.91873 0.90478 0.91247 0.89094 0.75022 0.89848 0.88038 0.93028 0.88851 0.93517 0.92246 0.84039 0.92625 0.90368 0.80709 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 37.16 0.36 -1.66 16 2 C -0.11 -1.75 5.31 -26.73 -0.14 -1.90 16 3 C -0.11 -1.75 1.92 -90.50 -0.17 -1.92 16 4 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 5 C 0.12 1.77 5.31 -3.72 -0.02 1.75 16 6 N -0.58 -8.98 2.97 -174.04 -0.52 -9.49 16 7 C 0.60 9.23 7.68 -12.52 -0.10 9.14 16 8 O -0.55 -9.30 16.34 5.27 0.09 -9.21 16 9 C -0.06 -0.84 6.72 -83.02 -0.56 -1.39 16 10 C 0.02 0.20 11.95 29.96 0.36 0.56 16 11 O -0.19 -1.93 10.73 6.53 0.07 -1.86 16 12 C 0.19 2.09 7.93 -13.08 -0.10 1.99 16 13 C 0.16 1.20 6.56 36.01 0.24 1.44 16 14 O -0.38 -3.46 10.69 -35.23 -0.38 -3.84 16 15 C 0.03 0.17 11.01 101.05 1.11 1.29 16 16 N -0.43 -5.59 7.74 -7.65 -0.06 -5.65 16 17 C 0.06 0.98 6.33 -3.71 -0.02 0.96 16 18 C -0.14 -2.52 5.66 -26.61 -0.15 -2.67 16 19 C 0.19 3.54 2.19 -67.88 -0.15 3.39 16 20 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 21 N -0.75 -17.24 4.13 -53.38 -0.22 -17.46 16 22 C -0.24 -6.56 10.41 -15.06 -0.16 -6.72 16 23 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 24 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 25 N -0.94 -29.15 13.97 55.49 0.78 -28.38 16 26 Si 0.88 22.10 27.74 -169.99 -4.71 17.38 16 27 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.63 6.52 56.52 0.37 -6.27 16 29 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.64 6.70 -51.93 -0.35 0.30 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.38 7.21 -51.93 -0.37 1.00 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.35 5.77 -51.93 -0.30 1.05 16 37 H 0.23 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.14 2.12 3.67 -76.59 -0.28 1.84 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.36 8.35 5.37 -40.82 -0.22 8.13 16 48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 386.28 15.07 5.82 5.82 Total: -1.00 -34.21 386.28 -6.19 -40.40 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -7.45 Total: 8.01 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 0.40 Total: 4.28 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.02 Total: -60.98 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.22 Total: -14.92 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.21 -6.19 -40.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037971479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.469 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds