Wall clock time and date at job start Tue Mar 31 2020 20:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46818 * 2 1 4 4 H 1.09002 * 109.49918 * 55.00052 * 3 2 1 5 5 C 1.53187 * 109.49842 * 294.93393 * 3 2 1 6 6 N 1.46931 * 108.77858 * 185.38430 * 5 3 2 7 7 C 1.34770 * 120.62942 * 233.58820 * 6 5 3 8 8 O 1.21275 * 120.00296 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99652 * 179.97438 * 7 6 5 10 10 N 1.46497 * 109.47099 * 180.02562 * 9 7 6 11 11 C 1.33884 * 122.76086 * 269.70855 * 10 9 7 12 12 O 1.21224 * 125.39577 * 359.97438 * 11 10 9 13 13 C 1.51319 * 109.20444 * 179.84289 * 11 10 9 14 14 C 1.54225 * 103.55734 * 0.38646 * 13 11 10 15 15 C 1.33880 * 122.76399 * 89.99995 * 10 9 7 16 16 O 1.21217 * 125.39689 * 0.02562 * 15 10 9 17 17 C 1.46925 * 118.73466 * 53.60925 * 6 5 3 18 18 C 1.53194 * 108.77661 * 306.39203 * 17 6 5 19 19 C 1.53036 * 109.49372 * 175.06532 * 3 2 1 20 20 H 1.09003 * 109.46509 * 61.32997 * 19 3 2 21 21 N 1.46501 * 109.46507 * 301.36782 * 19 3 2 22 22 C 1.36935 * 120.00647 * 155.00025 * 21 19 3 23 23 H 1.08002 * 119.99588 * 359.97438 * 22 21 19 24 24 C 1.38814 * 120.00113 * 180.02562 * 22 21 19 25 25 N 1.31613 * 120.00086 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99772 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47051 * 89.99560 * 26 24 22 28 28 H 1.48499 * 109.46971 * 209.99820 * 26 24 22 29 29 H 1.48500 * 109.47187 * 329.99743 * 26 24 22 30 30 H 1.09001 * 109.47108 * 299.99988 * 1 2 3 31 31 H 1.08997 * 109.47243 * 59.99712 * 1 2 3 32 32 H 1.08996 * 109.47553 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.46805 * 239.99564 * 2 1 3 34 34 H 1.09000 * 109.46978 * 119.99829 * 2 1 3 35 35 H 1.09004 * 109.58908 * 305.17142 * 5 3 2 36 36 H 1.09007 * 109.58837 * 65.59504 * 5 3 2 37 37 H 1.09002 * 109.47045 * 299.99894 * 9 7 6 38 38 H 1.09000 * 109.47545 * 59.99998 * 9 7 6 39 39 H 1.09001 * 110.79476 * 241.77455 * 13 11 10 40 40 H 1.09003 * 110.41233 * 118.81429 * 13 11 10 41 41 H 1.08999 * 110.60747 * 241.26505 * 14 13 11 42 42 H 1.08995 * 110.60635 * 118.29416 * 14 13 11 43 43 H 1.08995 * 109.58986 * 66.17814 * 17 6 5 44 44 H 1.09003 * 109.58612 * 186.60908 * 17 6 5 45 45 H 1.09002 * 109.49873 * 174.58798 * 18 17 6 46 46 H 1.08999 * 109.49823 * 294.65566 * 18 17 6 47 47 H 0.97000 * 119.99453 * 335.00255 * 21 19 3 48 48 H 0.96998 * 120.00182 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6056 1.9820 0.8417 5 6 1.6364 2.1275 -1.3094 6 7 2.2423 3.4655 -1.3496 7 6 1.4821 4.5572 -1.5652 8 8 0.2861 4.4408 -1.7289 9 6 2.1183 5.9228 -1.6030 10 7 1.0883 6.9348 -1.8498 11 6 0.7445 7.3334 -3.0808 12 8 1.2274 6.9203 -4.1131 13 6 -0.3448 8.3789 -2.9795 14 6 -0.5663 8.5241 -1.4601 15 6 0.4172 7.5413 -0.8628 16 8 0.5730 7.3360 0.3217 17 6 3.6926 3.5904 -1.1506 18 6 4.0731 2.8890 0.1571 19 6 3.5653 1.4450 0.1241 20 1 4.0001 0.9268 -0.7307 21 7 3.9557 0.7609 1.3593 22 6 5.1939 0.1851 1.4613 23 1 5.8826 0.2350 0.6308 24 6 5.5635 -0.4635 2.6316 25 7 4.7240 -0.5247 3.6434 26 14 7.2529 -1.2483 2.7708 27 1 8.2169 -0.2557 3.3100 28 1 7.1822 -2.4167 3.6848 29 1 7.7027 -1.6965 1.4284 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9935 1.5392 -2.1548 36 1 0.5509 2.2163 -1.3560 37 1 2.6035 6.1242 -0.6479 38 1 2.8598 5.9563 -2.4013 39 1 -1.2565 8.0366 -3.4691 40 1 -0.0078 9.3219 -3.4099 41 1 -1.5881 8.2539 -1.1939 42 1 -0.3395 9.5393 -1.1347 43 1 4.2174 3.1214 -1.9829 44 1 3.9640 4.6445 -1.0922 45 1 5.1574 2.8907 0.2687 46 1 3.6201 3.4151 0.9973 47 1 3.3369 0.7158 2.1050 48 1 4.9824 -0.9776 4.4613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037988534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:24 Heat of formation + Delta-G solvation = -88.096066 kcal Electronic energy + Delta-G solvation = -30363.262143 eV Core-core repulsion = 26225.676798 eV Total energy + Delta-G solvation = -4137.585345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23792 -40.06989 -38.83091 -37.84290 -36.08454 -34.83267 -33.96871 -33.61180 -31.76222 -29.61449 -29.44621 -27.73850 -26.52382 -24.92382 -23.87979 -22.85571 -22.70548 -20.92108 -20.64453 -19.63125 -18.98908 -17.93628 -17.41725 -17.11712 -16.77764 -16.69080 -15.79773 -15.34237 -14.98730 -14.93035 -14.48971 -14.32607 -14.23132 -14.02162 -13.85456 -13.66019 -13.41564 -13.29323 -13.15141 -13.12861 -12.80298 -12.39933 -12.09626 -11.87371 -11.77646 -11.66022 -11.31616 -11.00201 -10.95228 -10.87447 -10.73701 -10.63080 -10.37340 -10.34785 -10.23201 -10.16449 -9.77655 -9.62710 -9.58783 -8.92453 -8.56258 -6.99050 -5.79523 -3.08502 1.23652 2.01099 2.41079 2.49495 3.06139 3.40742 3.46194 3.47916 3.70906 3.84498 4.04390 4.29429 4.46952 4.55398 4.71778 4.83768 4.94533 5.02919 5.06381 5.18457 5.18816 5.20992 5.22379 5.30552 5.41612 5.52917 5.58140 5.65599 5.65777 5.86210 5.98010 6.09462 6.13094 6.27940 6.33011 6.36502 6.43165 6.46934 6.51377 6.64658 6.79541 6.93328 7.00695 7.02722 7.34617 7.46369 7.66455 8.05283 8.38460 9.50013 10.07155 10.42062 11.42841 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.002723 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.609705 B =10282.115544 C =10757.774831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.070 0.930 5 C 0.120 3.880 6 N -0.600 5.600 7 C 0.505 3.495 8 O -0.542 6.542 9 C 0.079 3.921 10 N -0.559 5.559 11 C 0.531 3.469 12 O -0.482 6.482 13 C -0.154 4.154 14 C -0.154 4.154 15 C 0.529 3.471 16 O -0.475 6.475 17 C 0.104 3.896 18 C -0.153 4.153 19 C 0.184 3.816 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 18.069 -13.706 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.333 5.333 7 C 0.291 3.709 8 O -0.419 6.419 9 C -0.046 4.046 10 N -0.302 5.302 11 C 0.321 3.679 12 O -0.353 6.353 13 C -0.193 4.193 14 C -0.193 4.193 15 C 0.318 3.682 16 O -0.346 6.346 17 C -0.019 4.019 18 C -0.194 4.194 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.846 17.551 -13.709 24.350 hybrid contribution 0.991 -0.559 0.535 1.258 sum -8.855 16.991 -13.174 23.252 Atomic orbital electron populations 1.21844 0.96822 1.01052 1.01283 1.21447 0.94368 0.95611 1.03515 1.21788 0.97715 0.96329 0.96641 0.91159 1.21787 0.99427 0.81020 0.97985 1.48116 1.08638 1.06676 1.69858 1.20548 0.87282 0.86134 0.76900 1.90677 1.14664 1.86333 1.50254 1.21652 0.90626 0.86086 1.06261 1.46353 1.36947 1.36943 1.09939 1.20829 0.82864 0.82077 0.82178 1.90781 1.55815 1.57838 1.30847 1.22450 0.99585 1.00041 0.97255 1.22453 1.01340 1.00997 0.94552 1.20844 0.80909 0.81003 0.85436 1.90813 1.65067 1.63866 1.14837 1.21950 0.79149 1.01035 0.99775 1.22721 1.02383 0.99408 0.94918 1.20186 0.90721 0.90451 0.91306 0.93343 1.42408 1.16472 1.64375 1.12735 1.19204 0.91769 1.27393 0.98642 0.91229 1.24731 0.98118 1.01511 0.96454 1.69655 1.35188 1.48320 1.04758 0.86228 0.84132 0.78750 0.77288 1.21791 1.21831 1.20799 0.92990 0.93286 0.93124 0.92424 0.89715 0.91451 0.89169 0.85729 0.85901 0.85948 0.86105 0.85952 0.86048 0.90918 0.90740 0.90328 0.92020 0.78169 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.67 37.16 0.36 -1.81 16 2 C -0.11 -1.82 5.31 -26.73 -0.14 -1.96 16 3 C -0.10 -1.73 1.92 -90.51 -0.17 -1.90 16 4 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 5 C 0.12 1.78 5.32 -3.71 -0.02 1.76 16 6 N -0.60 -8.49 2.97 -172.77 -0.51 -9.00 16 7 C 0.51 7.46 7.77 -10.99 -0.09 7.38 16 8 O -0.54 -9.64 15.84 5.56 0.09 -9.55 16 9 C 0.08 0.89 4.38 -5.19 -0.02 0.87 16 10 N -0.56 -6.06 2.04 -116.62 -0.24 -6.30 16 11 C 0.53 5.29 8.08 -11.08 -0.09 5.20 16 12 O -0.48 -6.36 17.47 5.61 0.10 -6.26 16 13 C -0.15 -0.73 7.03 -26.94 -0.19 -0.92 16 14 C -0.15 -0.77 7.03 -26.94 -0.19 -0.96 16 15 C 0.53 5.54 8.08 -11.08 -0.09 5.45 16 16 O -0.48 -6.80 17.48 5.61 0.10 -6.71 16 17 C 0.10 1.30 6.34 -3.71 -0.02 1.27 16 18 C -0.15 -2.48 5.66 -26.57 -0.15 -2.63 16 19 C 0.18 3.41 2.20 -67.85 -0.15 3.26 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -17.03 4.33 -53.35 -0.23 -17.26 16 22 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 26 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.65 7.22 -51.93 -0.37 1.27 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.41 5.72 -51.92 -0.30 1.12 16 37 H 0.12 1.29 7.38 -51.93 -0.38 0.90 16 38 H 0.12 1.15 7.62 -51.93 -0.40 0.76 16 39 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.73 5.93 -51.93 -0.31 0.42 16 45 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.38 9.90 7.51 -40.82 -0.31 9.59 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -35.46 388.29 -7.81 -43.27 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.45 Total: 7.76 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.21 Total: 8.10 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.26 Total: -59.35 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.28 Total: -22.52 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.46 -7.81 -43.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037988534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.830 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds