Wall clock time and date at job start Tue Mar 31 2020 20:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47072 * 2 1 4 4 C 1.50705 * 109.46483 * 119.99487 * 2 1 3 5 5 O 1.21281 * 120.00345 * 260.27030 * 4 2 1 6 6 N 1.34781 * 119.99930 * 80.27216 * 4 2 1 7 7 C 1.47020 * 125.65026 * 182.98613 * 6 4 2 8 8 C 1.54319 * 107.27059 * 181.09492 * 7 6 4 9 9 C 1.55153 * 102.94455 * 22.19248 * 8 7 6 10 10 H 1.09005 * 111.03234 * 82.58857 * 9 8 7 11 11 N 1.46498 * 111.00616 * 206.42289 * 9 8 7 12 12 C 1.33932 * 125.46518 * 52.16912 * 11 9 8 13 13 O 1.21507 * 123.04953 * 359.97438 * 12 11 9 14 14 O 1.33704 * 113.90145 * 179.97438 * 12 11 9 15 15 C 1.45594 * 109.66666 * 359.97438 * 14 12 11 16 16 H 1.09007 * 112.57366 * 122.26577 * 15 14 12 17 17 C 1.54664 * 109.08931 * 248.79921 * 15 14 12 18 18 N 1.48110 * 104.55051 * 134.79834 * 17 15 14 19 19 C 1.36936 * 127.84750 * 140.21565 * 18 17 15 20 20 H 1.08003 * 119.99289 * 343.84346 * 19 18 17 21 21 C 1.38808 * 120.00225 * 163.84098 * 19 18 17 22 22 N 1.31621 * 119.99851 * 349.86865 * 21 19 18 23 23 Si 1.86798 * 119.99978 * 169.86286 * 21 19 18 24 24 H 1.48505 * 109.46957 * 60.00488 * 23 21 19 25 25 H 1.48498 * 109.47035 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47233 * 300.00252 * 23 21 19 27 27 C 1.48111 * 104.30627 * 319.95164 * 18 17 15 28 28 C 1.46986 * 125.46530 * 232.20071 * 11 9 8 29 29 H 1.08997 * 113.16350 * 57.55506 * 28 11 9 30 30 C 1.47423 * 125.64651 * 3.02985 * 6 4 2 31 31 H 1.08996 * 109.47469 * 306.10774 * 1 2 3 32 32 H 1.09002 * 109.46752 * 66.10414 * 1 2 3 33 33 H 1.08995 * 109.47207 * 186.09595 * 1 2 3 34 34 H 1.08998 * 109.47477 * 239.99550 * 2 1 3 35 35 H 1.09002 * 109.46848 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.46851 * 299.99473 * 3 2 1 37 37 H 1.08998 * 109.47337 * 59.99464 * 3 2 1 38 38 H 1.08996 * 109.88038 * 300.51859 * 7 6 4 39 39 H 1.09007 * 109.87627 * 61.52106 * 7 6 4 40 40 H 1.09001 * 110.72078 * 263.82654 * 8 7 6 41 41 H 1.09007 * 110.71974 * 140.56152 * 8 7 6 42 42 H 1.08993 * 110.50311 * 16.02494 * 17 15 14 43 43 H 1.09001 * 110.43462 * 253.53435 * 17 15 14 44 44 H 0.96997 * 119.99511 * 179.97438 * 22 21 19 45 45 H 1.08995 * 110.38628 * 158.84712 * 27 18 17 46 46 H 1.08996 * 110.38797 * 281.11433 * 27 18 17 47 47 H 1.09003 * 110.36711 * 36.99548 * 30 6 4 48 48 H 1.09003 * 110.45791 * 274.71894 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.4017 -0.0701 2.1921 6 7 2.0709 -2.0572 1.2627 7 6 2.4769 -2.8756 2.4145 8 6 2.3902 -4.3538 1.9796 9 6 2.4839 -4.2672 0.4334 10 1 3.5215 -4.1903 0.1081 11 7 1.8221 -5.4116 -0.1978 12 6 0.5710 -5.8199 0.0507 13 8 -0.1608 -5.2664 0.8473 14 8 0.2002 -6.8917 -0.6573 15 6 1.2965 -7.3142 -1.5172 16 1 1.5978 -8.3458 -1.3348 17 6 0.9167 -7.0421 -2.9916 18 7 2.1256 -6.4194 -3.5785 19 6 2.6612 -6.6316 -4.8208 20 1 2.3626 -7.4948 -5.3972 21 6 3.5876 -5.7374 -5.3392 22 7 3.8038 -4.5889 -4.7338 23 14 4.5277 -6.1641 -6.8960 24 1 3.5695 -6.3745 -8.0109 25 1 5.4495 -5.0513 -7.2383 26 1 5.3118 -7.4059 -6.6761 27 6 2.6200 -5.5102 -2.5190 28 6 2.4249 -6.2965 -1.2048 29 1 3.3425 -6.7743 -0.8615 30 6 1.7138 -2.9537 0.1482 31 1 -0.3634 0.6056 0.8302 32 1 -0.3633 0.4163 -0.9396 33 1 -0.3633 -1.0218 0.1091 34 1 1.8934 -0.5139 -0.8899 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9562 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 3.5004 -2.6324 2.6996 39 1 1.8053 -2.6936 3.2537 40 1 1.4391 -4.7903 2.2845 41 1 3.2254 -4.9248 2.3854 42 1 0.0711 -6.3566 -3.0477 43 1 0.6841 -7.9760 -3.5033 44 1 4.4515 -3.9642 -5.0959 45 1 3.6753 -5.2853 -2.6736 46 1 2.0348 -4.5907 -2.5041 47 1 2.0339 -2.5247 -0.8013 48 1 0.6396 -3.1386 0.1371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070903042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:07 Heat of formation + Delta-G solvation = -65.590068 kcal Electronic energy + Delta-G solvation = -31221.087831 eV Core-core repulsion = 27084.478419 eV Total energy + Delta-G solvation = -4136.609411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.66776 -40.15409 -37.99852 -37.27853 -35.76598 -34.51541 -34.47324 -32.18320 -30.98420 -29.12150 -28.26735 -27.43127 -27.20866 -24.85645 -24.72552 -23.09316 -21.64496 -21.33151 -20.94439 -19.89534 -18.93006 -17.55615 -17.34960 -17.08223 -16.37937 -16.03825 -15.86990 -15.29688 -15.06500 -14.80953 -14.55078 -14.17116 -13.93766 -13.89340 -13.64985 -13.29696 -13.17180 -12.99543 -12.92506 -12.54741 -12.44533 -12.28377 -12.09787 -11.93714 -11.71213 -11.46635 -11.24614 -11.23795 -11.19464 -11.04577 -11.00056 -10.95558 -10.62423 -10.41404 -10.22258 -10.03474 -9.99889 -9.73752 -8.94240 -8.81844 -8.57333 -7.20224 -6.05176 -3.42720 2.48033 2.63489 2.95752 3.03741 3.25224 3.30790 3.31510 3.66463 4.26365 4.32782 4.44624 4.46299 4.57416 4.77496 4.84527 4.93937 5.01769 5.08220 5.11388 5.20130 5.23695 5.29991 5.36876 5.50460 5.54669 5.59508 5.64497 5.67560 5.72138 5.74626 5.75835 5.84663 5.88005 5.94538 6.08996 6.12010 6.16551 6.23193 6.29887 6.45672 6.57653 6.92865 7.11150 7.43107 7.44330 7.64163 7.89670 8.14351 8.26750 8.82576 9.45638 10.16245 11.08611 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.003945 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.954316 B = 7096.398968 C = 8741.411063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.132 4.132 4 C 0.537 3.463 5 O -0.545 6.545 6 N -0.614 5.614 7 C 0.114 3.886 8 C -0.150 4.150 9 C 0.172 3.828 10 H 0.115 0.885 11 N -0.612 5.612 12 C 0.646 3.354 13 O -0.535 6.535 14 O -0.328 6.328 15 C 0.056 3.944 16 H 0.124 0.876 17 C 0.117 3.883 18 N -0.587 5.587 19 C -0.237 4.237 20 H 0.082 0.918 21 C 0.002 3.998 22 N -0.913 5.913 23 Si 0.916 3.084 24 H -0.282 1.282 25 H -0.289 1.289 26 H -0.282 1.282 27 C 0.152 3.848 28 C 0.070 3.930 29 H 0.107 0.893 30 C 0.087 3.913 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.068 0.932 44 H 0.258 0.742 45 H 0.097 0.903 46 H 0.035 0.965 47 H 0.088 0.912 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.400 1.848 9.183 9.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.190 4.190 4 C 0.326 3.674 5 O -0.422 6.422 6 N -0.348 5.348 7 C -0.009 4.009 8 C -0.189 4.189 9 C 0.068 3.932 10 H 0.133 0.867 11 N -0.358 5.358 12 C 0.401 3.599 13 O -0.422 6.422 14 O -0.237 6.237 15 C -0.001 4.001 16 H 0.142 0.858 17 C -0.010 4.010 18 N -0.312 5.312 19 C -0.364 4.364 20 H 0.099 0.901 21 C -0.196 4.196 22 N -0.558 5.558 23 Si 0.745 3.255 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.208 1.208 27 C 0.025 3.975 28 C -0.035 4.035 29 H 0.125 0.875 30 C -0.038 4.038 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.115 0.885 46 H 0.053 0.947 47 H 0.106 0.894 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.633 2.549 9.897 10.350 hybrid contribution 0.614 -0.319 -0.934 1.162 sum -1.019 2.230 8.964 9.293 Atomic orbital electron populations 1.21731 0.92512 1.02804 1.02841 1.21302 0.97938 0.97801 0.96439 1.21634 1.01386 0.93674 1.02311 1.20411 0.77337 0.80091 0.89581 1.90671 1.48734 1.65013 1.37807 1.48369 1.66712 1.05041 1.14674 1.21842 1.00571 0.89155 0.89316 1.23145 1.04904 0.95851 0.94970 1.21799 0.96624 0.82769 0.91978 0.86706 1.47881 1.13760 1.30672 1.43447 1.18529 0.81750 0.79534 0.80105 1.90968 1.56644 1.57923 1.36689 1.87178 1.39895 1.43296 1.53380 1.25261 0.83318 0.99042 0.92480 0.85837 1.22018 0.91656 0.98543 0.88772 1.44882 1.24738 1.48502 1.13054 1.18957 1.20388 1.05905 0.91192 0.90073 1.24920 1.00855 0.95084 0.98734 1.69854 1.36856 1.07798 1.41282 0.86152 0.79582 0.77417 0.82328 1.20778 1.21432 1.20836 1.21943 1.02393 0.91105 0.82090 1.23916 0.96620 0.91636 0.91342 0.87492 1.22754 1.01220 0.89530 0.90250 0.92077 0.91190 0.91995 0.88619 0.92327 0.91849 0.91702 0.91211 0.91227 0.88366 0.89591 0.94123 0.91400 0.93194 0.88484 0.94662 0.89391 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 2 C -0.11 -1.36 2.70 -91.77 -0.25 -1.60 16 3 C -0.13 -1.46 8.66 37.16 0.32 -1.13 16 4 C 0.54 7.78 7.00 -10.98 -0.08 7.70 16 5 O -0.54 -9.46 16.37 5.56 0.09 -9.37 16 6 N -0.61 -8.29 3.33 -170.52 -0.57 -8.86 16 7 C 0.11 1.39 6.87 -3.07 -0.02 1.37 16 8 C -0.15 -1.73 6.43 -24.90 -0.16 -1.89 16 9 C 0.17 2.21 3.66 -65.79 -0.24 1.97 16 10 H 0.12 1.35 8.13 -51.93 -0.42 0.93 16 11 N -0.61 -9.04 2.52 -159.97 -0.40 -9.45 16 12 C 0.65 11.06 8.15 53.68 0.44 11.50 16 13 O -0.54 -10.20 14.75 -19.12 -0.28 -10.48 16 14 O -0.33 -5.58 10.64 -37.67 -0.40 -5.98 16 15 C 0.06 0.86 4.98 -24.73 -0.12 0.74 16 16 H 0.12 1.55 8.14 -51.92 -0.42 1.13 16 17 C 0.12 2.12 6.99 -2.28 -0.02 2.11 16 18 N -0.59 -12.88 3.37 -168.76 -0.57 -13.45 16 19 C -0.24 -5.80 10.35 -15.06 -0.16 -5.96 16 20 H 0.08 1.92 7.85 -52.48 -0.41 1.50 16 21 C 0.00 0.05 5.38 -17.43 -0.09 -0.04 16 22 N -0.91 -23.76 10.92 55.49 0.61 -23.15 16 23 Si 0.92 19.89 29.57 -169.99 -5.03 14.86 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 27 C 0.15 3.01 5.49 -2.43 -0.01 2.99 16 28 C 0.07 1.08 4.51 -65.81 -0.30 0.78 16 29 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 30 C 0.09 1.17 5.95 -2.53 -0.02 1.15 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 34 H 0.10 1.10 6.88 -51.93 -0.36 0.74 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.75 7.90 -51.93 -0.41 0.34 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 1.34 6.10 -51.93 -0.32 1.03 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.79 8.01 -51.93 -0.42 0.38 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 45 H 0.10 2.15 6.56 -51.93 -0.34 1.81 16 46 H 0.04 0.76 7.96 -51.93 -0.41 0.35 16 47 H 0.09 1.17 6.95 -51.93 -0.36 0.81 16 48 H 0.09 1.30 6.49 -51.93 -0.34 0.96 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -29.91 379.29 -8.74 -38.65 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.55 Total: 3.03 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: -0.36 Total: 18.47 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.93 Total: -54.91 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.59 Total: -25.83 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.91 -8.74 -38.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070903042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.940 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds