Wall clock time and date at job start Tue Mar 31 2020 20:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47190 * 2 1 4 4 C 1.50704 * 109.47438 * 120.00512 * 2 1 3 5 5 O 1.21279 * 119.99471 * 359.97438 * 4 2 1 6 6 N 1.34774 * 120.00340 * 179.97438 * 4 2 1 7 7 C 1.47434 * 125.64644 * 359.95513 * 6 4 2 8 8 C 1.55121 * 104.94153 * 204.03907 * 7 6 4 9 9 C 1.55155 * 101.48521 * 323.22467 * 8 7 6 10 10 H 1.09004 * 110.71978 * 276.83248 * 9 8 7 11 11 N 1.46498 * 110.72284 * 153.73578 * 9 8 7 12 12 C 1.33932 * 125.46169 * 303.84458 * 11 9 8 13 13 O 1.21510 * 123.05226 * 359.97438 * 12 11 9 14 14 O 1.33704 * 113.90055 * 179.97438 * 12 11 9 15 15 C 1.45599 * 109.66798 * 359.97438 * 14 12 11 16 16 H 1.08996 * 112.57983 * 122.26230 * 15 14 12 17 17 C 1.54314 * 109.22363 * 248.70537 * 15 14 12 18 18 N 1.48104 * 104.72523 * 134.60831 * 17 15 14 19 19 C 1.36934 * 127.84830 * 140.47718 * 18 17 15 20 20 H 1.08009 * 120.00009 * 344.01604 * 19 18 17 21 21 C 1.38807 * 120.00393 * 164.01786 * 19 18 17 22 22 N 1.31626 * 120.00065 * 350.56646 * 21 19 18 23 23 Si 1.86797 * 120.00525 * 170.57098 * 21 19 18 24 24 H 1.48500 * 109.47377 * 89.99751 * 23 21 19 25 25 H 1.48501 * 109.47459 * 210.00182 * 23 21 19 26 26 H 1.48503 * 109.46894 * 329.99942 * 23 21 19 27 27 C 1.48110 * 104.30745 * 320.21317 * 18 17 15 28 28 C 1.46987 * 125.46736 * 123.83747 * 11 9 8 29 29 H 1.08995 * 113.15785 * 57.58092 * 28 11 9 30 30 C 1.47014 * 125.64969 * 179.97438 * 6 4 2 31 31 H 1.09003 * 109.46926 * 299.99497 * 1 2 3 32 32 H 1.08998 * 109.47482 * 59.99717 * 1 2 3 33 33 H 1.09000 * 109.47243 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.47294 * 240.00163 * 2 1 3 35 35 H 1.08996 * 109.47140 * 60.00326 * 3 2 1 36 36 H 1.09001 * 109.47140 * 180.02562 * 3 2 1 37 37 H 1.08998 * 109.47214 * 299.99709 * 3 2 1 38 38 H 1.09003 * 110.36620 * 323.00582 * 7 6 4 39 39 H 1.08999 * 110.36074 * 85.21377 * 7 6 4 40 40 H 1.08998 * 111.15895 * 205.12971 * 8 7 6 41 41 H 1.08998 * 110.93351 * 81.21288 * 8 7 6 42 42 H 1.08991 * 110.39143 * 15.78910 * 17 15 14 43 43 H 1.09008 * 110.38741 * 253.41655 * 17 15 14 44 44 H 0.97002 * 120.00142 * 180.02562 * 22 21 19 45 45 H 1.09004 * 110.38825 * 158.62314 * 27 18 17 46 46 H 1.08998 * 110.38942 * 280.88936 * 27 18 17 47 47 H 1.09003 * 109.88177 * 59.49313 * 30 6 4 48 48 H 1.09000 * 110.01569 * 298.39592 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.2442 -1.1711 2.0289 6 7 3.3574 -0.8341 1.4434 7 6 4.4211 -0.3249 0.5586 8 6 5.6571 -1.2093 0.8691 9 6 5.5101 -1.4195 2.3993 10 1 5.9254 -0.5731 2.9464 11 7 6.1526 -2.6687 2.8150 12 6 5.8783 -3.8843 2.3243 13 8 5.0453 -4.0781 1.4612 14 8 6.6043 -4.8653 2.8704 15 6 7.5077 -4.3095 3.8677 16 1 7.3629 -4.7487 4.8547 17 6 8.9602 -4.4293 3.3605 18 7 9.5673 -3.1080 3.6417 19 6 10.8318 -2.8439 4.0961 20 1 11.4242 -3.6338 4.5340 21 6 11.3522 -1.5612 3.9942 22 7 10.7127 -0.6448 3.2987 23 14 12.9603 -1.1353 4.8439 24 1 14.0932 -1.4004 3.9211 25 1 12.9554 0.3008 5.2218 26 1 13.1109 -1.9678 6.0644 27 6 8.4984 -2.1367 3.3134 28 6 7.2017 -2.7890 3.8375 29 1 6.8995 -2.3994 4.8096 30 6 3.9815 -1.4994 2.5964 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4424 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 4.1293 -0.4324 -0.4862 39 1 4.6362 0.7191 0.7861 40 1 6.5841 -0.6865 0.6337 41 1 5.6001 -2.1589 0.3370 42 1 8.9729 -4.6329 2.2898 43 1 9.4886 -5.2132 3.9032 44 1 11.0766 0.2516 3.2271 45 1 8.6781 -1.1885 3.8203 46 1 8.4408 -1.9853 2.2356 47 1 3.6673 -2.5423 2.6374 48 1 3.6994 -0.9908 3.5182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070903043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:10 Heat of formation + Delta-G solvation = -62.449531 kcal Electronic energy + Delta-G solvation = -30914.904452 eV Core-core repulsion = 26778.431225 eV Total energy + Delta-G solvation = -4136.473227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.62333 -40.22129 -37.96210 -37.23916 -35.73798 -34.79981 -34.35454 -32.16162 -30.87005 -29.20061 -28.35814 -27.46033 -27.16619 -25.02138 -24.70030 -22.50359 -22.25229 -21.27081 -20.88466 -19.78909 -19.17807 -17.65033 -17.16839 -17.00480 -16.19995 -15.98204 -15.87978 -15.73658 -15.05356 -14.85868 -14.65992 -14.13090 -13.87887 -13.80250 -13.60346 -13.38270 -13.17264 -12.98888 -12.84555 -12.50633 -12.47097 -12.29898 -12.13441 -12.08596 -11.77955 -11.39215 -11.30432 -11.24605 -11.19630 -11.13812 -11.03314 -10.93675 -10.58020 -10.37071 -10.16601 -10.02922 -9.96379 -9.79306 -8.91928 -8.72159 -8.63404 -7.17335 -6.03048 -3.40394 2.52570 2.59820 2.97905 3.07945 3.25557 3.32209 3.33087 3.72362 4.22449 4.28599 4.39524 4.50353 4.57898 4.71185 4.74079 4.83551 5.03444 5.06068 5.08201 5.17074 5.25766 5.26399 5.35394 5.38704 5.40838 5.51020 5.57437 5.59664 5.63062 5.68270 5.79004 5.85597 5.89783 5.91906 6.01329 6.04023 6.13747 6.24789 6.33657 6.49406 6.63688 6.98087 7.15421 7.42657 7.45766 7.69641 7.92322 8.11219 8.33847 8.84901 9.47710 10.18793 11.10671 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.003013 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.623385 B = 9290.953655 C =10385.951898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.111 4.111 3 C -0.151 4.151 4 C 0.533 3.467 5 O -0.542 6.542 6 N -0.610 5.610 7 C 0.103 3.897 8 C -0.150 4.150 9 C 0.173 3.827 10 H 0.116 0.884 11 N -0.613 5.613 12 C 0.645 3.355 13 O -0.534 6.534 14 O -0.329 6.329 15 C 0.056 3.944 16 H 0.123 0.877 17 C 0.117 3.883 18 N -0.588 5.588 19 C -0.234 4.234 20 H 0.082 0.918 21 C 0.000 4.000 22 N -0.913 5.913 23 Si 0.916 3.084 24 H -0.286 1.286 25 H -0.288 1.288 26 H -0.278 1.278 27 C 0.152 3.848 28 C 0.070 3.930 29 H 0.106 0.894 30 C 0.097 3.903 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.040 0.960 43 H 0.067 0.933 44 H 0.257 0.743 45 H 0.098 0.902 46 H 0.036 0.964 47 H 0.080 0.920 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.514 4.144 -4.107 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.132 4.132 3 C -0.209 4.209 4 C 0.321 3.679 5 O -0.419 6.419 6 N -0.345 5.345 7 C -0.020 4.020 8 C -0.188 4.188 9 C 0.069 3.931 10 H 0.134 0.866 11 N -0.359 5.359 12 C 0.400 3.600 13 O -0.420 6.420 14 O -0.238 6.238 15 C -0.001 4.001 16 H 0.141 0.859 17 C -0.010 4.010 18 N -0.313 5.313 19 C -0.361 4.361 20 H 0.099 0.901 21 C -0.198 4.198 22 N -0.559 5.559 23 Si 0.746 3.254 24 H -0.213 1.213 25 H -0.214 1.214 26 H -0.204 1.204 27 C 0.025 3.975 28 C -0.035 4.035 29 H 0.124 0.876 30 C -0.027 4.027 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.116 0.884 46 H 0.054 0.946 47 H 0.098 0.902 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.249 3.746 -4.145 14.379 hybrid contribution 1.021 0.305 0.441 1.153 sum -12.228 4.051 -3.705 13.404 Atomic orbital electron populations 1.21606 0.92471 1.02840 1.01989 1.21254 0.98179 0.97310 0.96451 1.21936 1.02089 0.94017 1.02828 1.20387 0.80203 0.79533 0.87728 1.90693 1.54403 1.49271 1.47561 1.48309 1.05155 1.56849 1.24174 1.22475 0.86809 0.97787 0.94972 1.23318 0.98018 1.01940 0.95546 1.21708 0.90645 0.84717 0.95993 0.86648 1.47939 1.40653 1.06201 1.41094 1.18525 0.80466 0.79866 0.81148 1.90986 1.34609 1.84142 1.32292 1.87177 1.50777 1.33198 1.52676 1.25167 0.91551 0.91958 0.91437 0.85900 1.21945 0.88957 0.91344 0.98724 1.44890 1.10745 0.99026 1.76598 1.18996 0.88996 0.95436 1.32705 0.90062 1.24928 0.98699 0.96914 0.99257 1.69865 1.39977 1.03819 1.42206 0.86072 0.82634 0.77557 0.79173 1.21287 1.21431 1.20382 1.21939 0.82142 0.95138 0.98244 1.23903 0.90434 0.96639 0.92531 0.87570 1.22257 0.92066 0.99438 0.88952 0.91969 0.92052 0.91977 0.88552 0.92113 0.91368 0.91428 0.90124 0.90538 0.88579 0.88759 0.94184 0.91442 0.93304 0.88409 0.94601 0.90159 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 8.48 37.15 0.32 -0.91 16 2 C -0.11 -1.07 2.61 -91.77 -0.24 -1.31 16 3 C -0.15 -1.12 9.00 37.16 0.33 -0.79 16 4 C 0.53 7.31 7.21 -10.98 -0.08 7.23 16 5 O -0.54 -9.54 16.31 5.56 0.09 -9.45 16 6 N -0.61 -7.85 3.32 -170.38 -0.57 -8.42 16 7 C 0.10 1.03 5.14 -2.41 -0.01 1.01 16 8 C -0.15 -1.85 6.59 -24.47 -0.16 -2.02 16 9 C 0.17 2.30 3.53 -66.10 -0.23 2.06 16 10 H 0.12 1.35 8.13 -51.93 -0.42 0.93 16 11 N -0.61 -9.68 2.49 -160.36 -0.40 -10.08 16 12 C 0.65 11.89 7.98 53.68 0.43 12.32 16 13 O -0.53 -11.02 15.05 -19.12 -0.29 -11.31 16 14 O -0.33 -5.97 10.64 -37.67 -0.40 -6.37 16 15 C 0.06 0.91 4.97 -24.92 -0.12 0.79 16 16 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 17 C 0.12 2.21 6.97 -2.47 -0.02 2.19 16 18 N -0.59 -13.21 3.38 -169.01 -0.57 -13.78 16 19 C -0.23 -5.81 10.35 -15.06 -0.16 -5.97 16 20 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 21 C 0.00 -0.01 5.39 -17.43 -0.09 -0.10 16 22 N -0.91 -23.96 10.88 55.49 0.60 -23.35 16 23 Si 0.92 20.08 29.56 -169.99 -5.03 15.05 16 24 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 C 0.15 3.10 5.49 -2.46 -0.01 3.09 16 28 C 0.07 1.13 4.50 -65.84 -0.30 0.84 16 29 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 30 C 0.10 1.35 6.36 -3.07 -0.02 1.33 16 31 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.10 0.82 7.84 -51.93 -0.41 0.41 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.46 5.00 -51.93 -0.26 0.20 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.69 7.36 -51.93 -0.38 0.30 16 39 H 0.08 0.61 7.07 -51.93 -0.37 0.24 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.09 1.43 6.41 -51.93 -0.33 1.10 16 42 H 0.04 0.81 8.00 -51.93 -0.42 0.39 16 43 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 44 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 45 H 0.10 2.20 6.53 -51.93 -0.34 1.86 16 46 H 0.04 0.80 7.97 -51.93 -0.41 0.38 16 47 H 0.08 1.38 6.57 -51.93 -0.34 1.04 16 48 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -31.63 375.92 -8.71 -40.34 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.45 Total: 1.91 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: -0.37 Total: 19.78 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.93 Total: -55.62 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.60 Total: -27.13 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.63 -8.71 -40.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070903043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.105 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds