Wall clock time and date at job start Tue Mar 31 2020 20:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47196 * 2 1 4 4 H 1.09002 * 109.46961 * 57.35739 * 3 2 1 5 5 C 1.50701 * 109.47484 * 177.35912 * 3 2 1 6 6 O 1.21278 * 120.00061 * 94.02937 * 5 3 2 7 7 N 1.34776 * 120.00027 * 274.03347 * 5 3 2 8 8 C 1.48144 * 127.83814 * 179.97438 * 7 5 3 9 9 C 1.54397 * 104.61772 * 219.58727 * 8 7 5 10 10 H 1.09002 * 110.42602 * 95.05183 * 9 8 7 11 11 C 1.52991 * 110.34188 * 217.26246 * 9 8 7 12 12 F 1.39907 * 109.47294 * 175.53792 * 11 9 8 13 13 F 1.39902 * 109.47303 * 295.53613 * 11 9 8 14 14 F 1.39903 * 109.47241 * 55.53692 * 11 9 8 15 15 C 1.54280 * 104.95887 * 336.13701 * 9 8 7 16 16 H 1.09005 * 110.33945 * 241.02568 * 15 9 8 17 17 N 1.46495 * 110.34450 * 118.87024 * 15 9 8 18 18 C 1.36938 * 120.00037 * 154.99729 * 17 15 9 19 19 H 1.08000 * 120.00176 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00024 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00042 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00086 * 180.27759 * 20 18 17 23 23 H 1.48496 * 109.47192 * 179.72157 * 22 20 18 24 24 H 1.48508 * 109.46995 * 299.72139 * 22 20 18 25 25 H 1.48497 * 109.47268 * 59.71890 * 22 20 18 26 26 C 1.48146 * 127.83636 * 0.02562 * 7 5 3 27 27 N 1.46909 * 109.47436 * 297.35959 * 3 2 1 28 28 C 1.46894 * 111.00055 * 182.65980 * 27 3 2 29 29 C 1.46899 * 110.99771 * 306.61544 * 27 3 2 30 30 H 1.08994 * 109.46924 * 305.04255 * 1 2 3 31 31 H 1.09000 * 109.47316 * 65.04429 * 1 2 3 32 32 H 1.09001 * 109.46818 * 185.04760 * 1 2 3 33 33 H 1.09009 * 109.46934 * 240.00502 * 2 1 3 34 34 H 1.08998 * 109.47369 * 120.00398 * 2 1 3 35 35 H 1.08999 * 110.40938 * 100.80462 * 8 7 5 36 36 H 1.08999 * 110.41035 * 338.36761 * 8 7 5 37 37 H 0.96997 * 120.00433 * 335.00245 * 17 15 9 38 38 H 0.96999 * 119.99912 * 180.02562 * 21 20 18 39 39 H 1.08992 * 110.41013 * 21.62598 * 26 7 5 40 40 H 1.08998 * 110.40219 * 259.19150 * 26 7 5 41 41 H 1.08999 * 109.47190 * 60.00346 * 28 27 3 42 42 H 1.09001 * 109.47323 * 180.02562 * 28 27 3 43 43 H 1.09004 * 109.47515 * 300.00189 * 28 27 3 44 44 H 1.09000 * 109.47459 * 53.86842 * 29 27 3 45 45 H 1.08994 * 109.46914 * 173.86981 * 29 27 3 46 46 H 1.09000 * 109.47287 * 293.87010 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6385 1.9698 0.8654 5 6 3.5456 1.4430 0.0655 6 8 4.1970 1.5010 -0.9559 7 7 4.1683 1.3791 1.2591 8 6 5.6257 1.3680 1.5243 9 6 5.8050 0.3520 2.6730 10 1 6.0560 -0.6314 2.2753 11 6 6.8922 0.8274 3.6387 12 9 6.9693 -0.0522 4.7239 13 9 8.1237 0.8589 2.9756 14 9 6.5779 2.1104 4.0998 15 6 4.4367 0.3096 3.3844 16 1 4.5395 0.6259 4.4225 17 7 3.8695 -1.0394 3.3176 18 6 2.9697 -1.4514 4.2641 19 1 2.6785 -0.7820 5.0600 20 6 2.4326 -2.7299 4.2011 21 7 2.7878 -3.5459 3.2314 22 14 1.1993 -3.2893 5.4878 23 1 0.7756 -4.6821 5.1947 24 1 1.8278 -3.2356 6.8322 25 1 0.0142 -2.3950 5.4593 26 6 3.5504 1.3029 2.6034 27 7 1.6032 2.1164 -1.2301 28 6 2.1283 3.4867 -1.2945 29 6 1.9932 1.3467 -2.4190 30 1 -0.3633 0.5900 0.8413 31 1 -0.3634 0.4336 -0.9317 32 1 -0.3633 -1.0237 0.0904 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 5.9630 2.3567 1.8354 36 1 6.1708 1.0407 0.6389 37 1 4.1312 -1.6408 2.6030 38 1 2.4122 -4.4391 3.1872 39 1 2.5301 0.9265 2.5320 40 1 3.5629 2.2814 3.0833 41 1 3.2179 3.4594 -1.2791 42 1 1.7895 3.9628 -2.2147 43 1 1.7670 4.0551 -0.4374 44 1 1.6243 0.3251 -2.3276 45 1 1.5648 1.8094 -3.3080 46 1 3.0798 1.3343 -2.5035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099307065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:05 Heat of formation + Delta-G solvation = -156.464986 kcal Electronic energy + Delta-G solvation = -32225.724156 eV Core-core repulsion = 27543.317372 eV Total energy + Delta-G solvation = -4682.406784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.94408 -47.45786 -47.35598 -40.45267 -38.36598 -36.34502 -34.14484 -32.99329 -31.93315 -30.66710 -27.97905 -27.67768 -27.26890 -25.38946 -24.27103 -23.09596 -22.43174 -20.92052 -20.40411 -19.01738 -18.35736 -18.04808 -17.85791 -17.12747 -16.74027 -16.08678 -15.41435 -15.34094 -14.88142 -14.65300 -14.48881 -14.26995 -14.15027 -13.86229 -13.78893 -13.60505 -13.53121 -13.45963 -13.35527 -13.15622 -12.91419 -12.39185 -12.19911 -12.05007 -11.94214 -11.72476 -11.68505 -11.60816 -11.33749 -11.23012 -10.96629 -10.92294 -10.90410 -10.65743 -10.45606 -10.26254 -10.04693 -9.89800 -9.25041 -8.60863 -8.05431 -7.22254 -5.95133 -3.27956 2.65772 2.82615 3.14624 3.34330 3.39853 3.40773 3.94529 4.01442 4.04281 4.17618 4.45454 4.62245 4.83978 4.96755 4.97892 5.19296 5.22226 5.26736 5.29968 5.42206 5.50683 5.59102 5.62025 5.65669 5.70491 5.75588 5.86948 5.91228 5.92764 5.98209 6.04882 6.08149 6.15681 6.26622 6.36317 6.41868 6.47850 6.63002 6.96347 7.05399 7.52827 7.68231 8.19524 8.26649 9.32868 9.80840 10.16561 11.25900 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.007843 B = 0.005987 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3568.995461 B = 4675.523517 C = 7554.508478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C 0.074 3.926 4 H 0.102 0.898 5 C 0.516 3.484 6 O -0.550 6.550 7 N -0.608 5.608 8 C 0.114 3.886 9 C -0.166 4.166 10 H 0.128 0.872 11 C 0.464 3.536 12 F -0.173 7.173 13 F -0.188 7.188 14 F -0.184 7.184 15 C 0.179 3.821 16 H 0.078 0.922 17 N -0.708 5.708 18 C -0.255 4.255 19 H 0.074 0.926 20 C 0.000 4.000 21 N -0.925 5.925 22 Si 0.907 3.093 23 H -0.291 1.291 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.069 3.931 27 N -0.514 5.514 28 C 0.013 3.987 29 C -0.003 4.003 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.387 0.613 38 H 0.259 0.741 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 11.698 -4.790 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C -0.038 4.038 4 H 0.119 0.881 5 C 0.304 3.696 6 O -0.429 6.429 7 N -0.342 5.342 8 C -0.009 4.009 9 C -0.187 4.187 10 H 0.146 0.854 11 C 0.409 3.591 12 F -0.154 7.154 13 F -0.169 7.169 14 F -0.166 7.166 15 C 0.066 3.934 16 H 0.096 0.904 17 N -0.348 5.348 18 C -0.385 4.385 19 H 0.092 0.908 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.056 4.056 27 N -0.236 5.236 28 C -0.135 4.135 29 C -0.150 4.150 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.222 0.778 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.412 11.701 -5.280 12.915 hybrid contribution 0.611 -0.540 0.747 1.105 sum 2.022 11.161 -4.533 12.216 Atomic orbital electron populations 1.21584 0.94323 1.01394 1.01983 1.21625 0.97420 0.92361 1.04090 1.21956 0.88281 0.98452 0.95075 0.88060 1.21768 0.91427 0.74925 0.81442 1.90578 1.67865 1.51575 1.32890 1.49078 1.06661 1.71795 1.06620 1.22112 0.83724 0.97902 0.97209 1.23899 0.96090 1.03028 0.95701 0.85416 1.20313 0.82369 0.75136 0.81279 1.93238 1.96430 1.68735 1.56983 1.93170 1.46788 1.96326 1.80629 1.93152 1.92761 1.40708 1.89943 1.21017 0.87011 0.88592 0.96768 0.90397 1.42400 1.50901 1.08872 1.32635 1.19136 1.17186 0.97303 1.04894 0.90822 1.24745 1.00236 0.96456 0.98339 1.69645 1.46679 1.07834 1.32952 0.86281 0.81130 0.77739 0.81077 1.21637 1.21083 1.20994 1.23662 1.00661 0.99737 0.81588 1.62523 1.56972 1.02454 1.01692 1.22490 0.99014 0.89796 1.02211 1.22799 1.02210 0.98447 0.91577 0.92806 0.92265 0.92757 0.91347 0.89145 0.90468 0.89094 0.77797 0.93143 0.88419 0.91543 0.94200 0.91427 0.91853 0.91168 0.92296 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.71 37.16 0.36 -1.48 16 2 C -0.12 -1.77 4.89 -26.73 -0.13 -1.90 16 3 C 0.07 1.06 1.62 -68.86 -0.11 0.95 16 4 H 0.10 1.37 7.27 -51.93 -0.38 1.00 16 5 C 0.52 8.23 6.10 -10.99 -0.07 8.16 16 6 O -0.55 -9.94 12.62 5.56 0.07 -9.86 16 7 N -0.61 -9.17 3.32 -169.34 -0.56 -9.74 16 8 C 0.11 1.60 6.39 -2.41 -0.02 1.59 16 9 C -0.17 -2.46 2.84 -89.22 -0.25 -2.72 16 10 H 0.13 2.01 7.67 -51.93 -0.40 1.62 16 11 C 0.46 6.67 2.53 37.15 0.09 6.76 16 12 F -0.17 -2.83 16.92 2.25 0.04 -2.79 16 13 F -0.19 -2.62 17.17 2.25 0.04 -2.58 16 14 F -0.18 -2.53 16.05 2.25 0.04 -2.49 16 15 C 0.18 3.03 3.01 -66.56 -0.20 2.83 16 16 H 0.08 1.34 7.34 -51.93 -0.38 0.96 16 17 N -0.71 -15.25 5.11 -52.10 -0.27 -15.52 16 18 C -0.25 -6.22 9.96 -15.06 -0.15 -6.37 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 20 C 0.00 -0.01 5.50 -17.43 -0.10 -0.10 16 21 N -0.92 -25.56 13.06 55.49 0.72 -24.84 16 22 Si 0.91 20.75 29.55 -169.99 -5.02 15.72 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 C 0.07 1.03 6.40 -2.44 -0.02 1.02 16 27 N -0.51 -6.91 4.51 -244.59 -1.10 -8.01 16 28 C 0.01 0.16 9.21 60.06 0.55 0.72 16 29 C 0.00 -0.04 8.82 60.06 0.53 0.49 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.76 7.83 -51.93 -0.41 0.35 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.06 6.03 -51.92 -0.31 0.75 16 34 H 0.09 1.61 7.68 -51.93 -0.40 1.22 16 35 H 0.08 0.98 7.21 -51.93 -0.37 0.60 16 36 H 0.09 1.30 7.88 -51.93 -0.41 0.89 16 37 H 0.39 9.15 7.56 -40.82 -0.31 8.84 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.10 1.57 6.54 -51.93 -0.34 1.23 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.56 6.11 -51.93 -0.32 0.24 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.94 5.79 -51.93 -0.30 0.63 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.06 5.41 -51.93 -0.28 0.77 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -27.33 371.92 -6.63 -33.97 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.69 Total: 10.58 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 0.50 Total: 9.95 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -1.21 Total: -58.10 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.07 Total: -9.86 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 0.11 Total: -7.86 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.33 -6.63 -33.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099307065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.498 kcal (2) G-P(sol) polarization free energy of solvation -27.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds