Wall clock time and date at job start Tue Mar 31 2020 20:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46988 * 2 1 4 4 N 1.46506 * 109.46950 * 120.00139 * 2 1 3 5 5 C 1.46763 * 124.34992 * 120.00203 * 4 2 1 6 6 C 1.54480 * 105.47044 * 162.95933 * 5 4 2 7 7 H 1.09005 * 110.97167 * 267.29407 * 6 5 4 8 8 N 1.46500 * 110.96703 * 143.57409 * 6 5 4 9 9 C 1.34776 * 120.00218 * 158.09009 * 8 6 5 10 10 O 1.21349 * 119.99736 * 359.97438 * 9 8 6 11 11 C 1.49445 * 120.00223 * 179.97438 * 9 8 6 12 12 O 1.21349 * 119.99843 * 354.94531 * 11 9 8 13 13 N 1.34775 * 119.99937 * 174.94623 * 11 9 8 14 14 C 1.46503 * 119.99671 * 185.06334 * 13 11 9 15 15 C 1.53007 * 109.46820 * 185.00992 * 14 13 11 16 16 C 1.50706 * 115.54646 * 269.60368 * 15 14 13 17 17 H 1.07997 * 119.99718 * 95.24974 * 16 15 14 18 18 C 1.37872 * 120.00098 * 275.24838 * 16 15 14 19 19 N 1.31520 * 120.00135 * 5.14518 * 18 16 15 20 20 Si 1.86797 * 119.99923 * 185.15053 * 18 16 15 21 21 H 1.48498 * 109.47180 * 59.99795 * 20 18 16 22 22 H 1.48503 * 109.47161 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47122 * 299.99751 * 20 18 16 24 24 C 1.53005 * 117.49743 * 123.89891 * 15 14 13 25 25 C 1.52994 * 117.49922 * 55.27746 * 15 14 13 26 26 C 1.54625 * 101.76456 * 25.41763 * 6 5 4 27 27 C 1.34416 * 124.34591 * 299.97519 * 4 2 1 28 28 O 1.21278 * 124.94520 * 0.43213 * 27 4 2 29 29 H 1.09002 * 109.47031 * 60.00566 * 1 2 3 30 30 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47499 * 299.99632 * 1 2 3 32 32 H 1.09002 * 109.47123 * 239.99831 * 2 1 3 33 33 H 1.08996 * 109.46591 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.46817 * 299.99784 * 3 2 1 35 35 H 1.08994 * 109.46700 * 59.99878 * 3 2 1 36 36 H 1.09001 * 110.24164 * 43.95855 * 5 4 2 37 37 H 1.09000 * 110.24406 * 281.96288 * 5 4 2 38 38 H 0.97006 * 119.99962 * 338.08190 * 8 6 5 39 39 H 0.96990 * 120.00476 * 5.06426 * 13 11 9 40 40 H 1.09001 * 109.47384 * 305.00279 * 14 13 11 41 41 H 1.09000 * 109.47676 * 65.01124 * 14 13 11 42 42 H 0.96995 * 120.00095 * 185.00102 * 19 18 16 43 43 H 1.08993 * 117.50088 * 359.97438 * 24 15 14 44 44 H 1.08998 * 117.49667 * 145.01743 * 24 15 14 45 45 H 1.09000 * 117.49478 * 214.97878 * 25 15 14 46 46 H 1.09003 * 117.50132 * 359.97438 * 25 15 14 47 47 H 1.08994 * 110.48577 * 93.88252 * 26 6 5 48 48 H 1.09005 * 110.48308 * 216.51902 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8656 -1.8888 1.1728 6 6 3.4727 -1.9919 2.5895 7 1 4.4406 -1.4926 2.6365 8 7 3.5864 -3.3905 3.0106 9 6 4.4617 -3.7346 3.9760 10 8 5.1560 -2.8860 4.4960 11 6 4.5773 -5.1612 4.4059 12 8 3.8207 -5.9946 3.9528 13 7 5.5218 -5.5220 5.2970 14 6 5.7083 -6.9353 5.6349 15 6 6.7468 -7.0599 6.7517 16 6 8.1752 -7.2139 6.2967 17 1 8.8150 -6.3470 6.2233 18 6 8.6652 -8.4616 5.9741 19 7 7.8608 -9.5021 5.9657 20 14 10.4718 -8.6743 5.5493 21 1 11.3049 -8.2488 6.7025 22 1 10.7435 -10.1018 5.2429 23 1 10.8032 -7.8416 4.3652 24 6 6.3280 -7.7941 8.0271 25 6 6.4965 -6.2735 8.0400 26 6 2.4210 -1.2412 3.4387 27 6 1.7483 -0.3080 2.4562 28 8 1.0649 0.6463 2.7610 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.6561 -1.7772 0.4307 37 1 2.2645 -2.7716 0.9548 38 1 3.0316 -4.0689 2.5947 39 1 6.0781 -4.8461 5.7146 40 1 4.7609 -7.3566 5.9712 41 1 6.0547 -7.4768 4.7547 42 1 8.2182 -10.3902 5.8102 43 1 5.3126 -8.1879 8.0707 44 1 7.0856 -8.3888 8.5373 45 1 7.3651 -5.8678 8.5587 46 1 5.5923 -5.6669 8.0919 47 1 1.6976 -1.9414 3.8563 48 1 2.9063 -0.6737 4.2328 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117223003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:03 Heat of formation + Delta-G solvation = -78.681592 kcal Electronic energy + Delta-G solvation = -28956.944756 eV Core-core repulsion = 24819.767654 eV Total energy + Delta-G solvation = -4137.177102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.21071 -40.20815 -38.40726 -36.90838 -36.82467 -35.94220 -33.83929 -33.09955 -32.00088 -29.85632 -28.02524 -27.58087 -27.06132 -25.52108 -23.89060 -22.86568 -21.78674 -21.27501 -20.22695 -19.53205 -19.21231 -18.28799 -17.34632 -16.97481 -16.28671 -16.19639 -15.85275 -15.63941 -14.95927 -14.74839 -14.69578 -14.47827 -14.23090 -14.10088 -14.04121 -13.83970 -13.60782 -13.31256 -13.12217 -12.68716 -12.55216 -12.42473 -12.24185 -11.89476 -11.71535 -11.68372 -11.61359 -11.55598 -11.44232 -11.07582 -10.94967 -10.58988 -10.33319 -10.13222 -9.75702 -9.45417 -9.42389 -9.15626 -9.07014 -8.54876 -8.45285 -8.29804 -6.13697 -4.22100 1.58756 2.25259 2.26843 2.63966 3.25642 3.31292 3.33548 3.40880 3.73665 3.92834 4.06540 4.32896 4.38574 4.48033 4.57882 4.65639 4.76079 4.77984 4.96180 5.07901 5.15271 5.23781 5.25139 5.25483 5.37786 5.41252 5.46325 5.50605 5.79434 5.85987 5.90673 5.99496 6.21024 6.26042 6.31478 6.46488 6.59073 6.67064 6.71865 6.84964 7.01415 7.03013 7.33553 7.40375 7.64714 7.77194 7.82640 7.96996 8.27777 8.37140 8.80480 9.45529 10.94776 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.002045 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.818749 B =13688.017035 C =14063.846678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 C -0.169 4.169 4 N -0.616 5.616 5 C 0.098 3.902 6 C 0.136 3.864 7 H 0.117 0.883 8 N -0.700 5.700 9 C 0.514 3.486 10 O -0.513 6.513 11 C 0.496 3.504 12 O -0.535 6.535 13 N -0.673 5.673 14 C 0.158 3.842 15 C 0.025 3.975 16 C -0.500 4.500 17 H 0.061 0.939 18 C 0.072 3.928 19 N -0.875 5.875 20 Si 0.891 3.109 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.145 4.145 25 C -0.209 4.209 26 C -0.171 4.171 27 C 0.525 3.475 28 O -0.524 6.524 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.415 0.585 39 H 0.411 0.589 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.263 0.737 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.111 0.889 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 15.435 -11.844 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.352 5.352 5 C -0.026 4.026 6 C 0.030 3.970 7 H 0.135 0.865 8 N -0.355 5.355 9 C 0.295 3.705 10 O -0.387 6.387 11 C 0.275 3.725 12 O -0.414 6.414 13 N -0.323 5.323 14 C 0.037 3.963 15 C 0.024 3.976 16 C -0.538 4.538 17 H 0.080 0.920 18 C -0.132 4.132 19 N -0.511 5.511 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.183 4.183 25 C -0.246 4.246 26 C -0.212 4.212 27 C 0.313 3.687 28 O -0.400 6.400 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.253 0.747 39 H 0.247 0.753 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.129 0.871 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.164 15.758 -11.792 23.137 hybrid contribution 1.014 -0.409 -0.250 1.121 sum -11.150 15.349 -12.043 22.471 Atomic orbital electron populations 1.22190 0.94544 1.02490 1.03414 1.20979 0.94586 0.93168 0.86224 1.22192 1.01413 0.95660 1.03406 1.48448 1.51547 1.28777 1.06429 1.22308 0.94604 0.88492 0.97213 1.21789 1.00265 0.82571 0.92383 0.86516 1.45637 1.41401 1.08992 1.39458 1.20582 0.79856 0.90053 0.80007 1.90768 1.42673 1.51575 1.53710 1.19846 0.82930 0.87876 0.81862 1.90738 1.42452 1.52063 1.56098 1.46116 1.34166 1.11767 1.40222 1.21423 0.97563 0.77369 0.99989 1.19068 0.94488 0.99313 0.84722 1.20385 0.93979 0.93519 1.45890 0.92041 1.24987 0.97592 0.96117 0.94489 1.69994 1.34312 0.98887 1.47935 0.86676 0.85337 0.77098 0.79019 1.20199 1.21250 1.20135 1.22543 0.99694 0.92248 1.03839 1.22992 1.00848 0.94834 1.05942 1.22894 0.99575 0.99674 0.99106 1.20741 0.79967 0.84520 0.83496 1.90705 1.39240 1.28741 1.81333 0.91379 0.92405 0.90923 0.89271 0.92336 0.91371 0.90938 0.89081 0.90094 0.74732 0.75308 0.93021 0.90249 0.92746 0.91580 0.89690 0.90050 0.91469 0.87086 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.20 37.16 0.34 -0.81 16 2 C 0.15 1.00 3.47 -67.93 -0.24 0.76 16 3 C -0.17 -1.16 9.20 37.16 0.34 -0.82 16 4 N -0.62 -4.69 2.83 -164.84 -0.47 -5.16 16 5 C 0.10 0.56 7.03 -3.12 -0.02 0.54 16 6 C 0.14 1.09 3.48 -66.30 -0.23 0.86 16 7 H 0.12 1.02 7.63 -51.93 -0.40 0.62 16 8 N -0.70 -6.84 5.16 -52.66 -0.27 -7.11 16 9 C 0.51 7.08 7.89 -11.59 -0.09 6.99 16 10 O -0.51 -8.04 16.18 5.50 0.09 -7.95 16 11 C 0.50 8.31 7.88 -11.59 -0.09 8.22 16 12 O -0.54 -9.91 16.47 5.50 0.09 -9.82 16 13 N -0.67 -12.29 5.40 -60.73 -0.33 -12.61 16 14 C 0.16 3.39 5.71 -4.04 -0.02 3.37 16 15 C 0.02 0.57 1.46 -155.65 -0.23 0.34 16 16 C -0.50 -12.72 8.77 -34.44 -0.30 -13.03 16 17 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 18 C 0.07 1.88 5.40 -17.82 -0.10 1.78 16 19 N -0.88 -23.61 12.91 55.43 0.72 -22.90 16 20 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.15 -3.19 9.38 -26.73 -0.25 -3.44 16 25 C -0.21 -4.18 9.50 -26.73 -0.25 -4.44 16 26 C -0.17 -1.52 6.59 -26.74 -0.18 -1.70 16 27 C 0.53 5.37 7.41 -10.86 -0.08 5.29 16 28 O -0.52 -7.14 15.12 5.56 0.08 -7.05 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.68 6.77 -51.93 -0.35 0.33 16 32 H 0.09 0.40 8.07 -51.93 -0.42 -0.02 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.68 6.80 -51.93 -0.35 0.33 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.37 7.78 -51.93 -0.40 -0.03 16 38 H 0.42 3.54 7.88 -40.82 -0.32 3.22 16 39 H 0.41 7.26 7.70 -40.82 -0.31 6.94 16 40 H 0.05 1.11 7.83 -51.93 -0.41 0.70 16 41 H 0.08 1.91 8.04 -51.93 -0.42 1.49 16 42 H 0.26 6.83 8.32 -40.82 -0.34 6.50 16 43 H 0.07 1.37 8.03 -51.93 -0.42 0.95 16 44 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 45 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 48 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -30.52 401.30 -8.03 -38.55 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.57 Total: 8.86 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.40 Total: 3.92 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.35 Total: -47.78 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.26 Total: -24.82 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.52 -8.03 -38.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117223003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.136 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds