Wall clock time and date at job start Tue Mar 31 2020 20:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46868 * 2 1 4 4 H 1.09000 * 109.47169 * 305.00199 * 3 2 1 5 5 C 1.50694 * 109.47252 * 184.99717 * 3 2 1 6 6 H 1.08001 * 120.00614 * 240.00095 * 5 3 2 7 7 C 1.37881 * 119.99926 * 59.72705 * 5 3 2 8 8 N 1.31508 * 119.99689 * 0.26993 * 7 5 3 9 9 Si 1.86800 * 120.00045 * 180.27598 * 7 5 3 10 10 H 1.48502 * 109.47050 * 89.99631 * 9 7 5 11 11 H 1.48495 * 109.47141 * 209.99474 * 9 7 5 12 12 H 1.48497 * 109.47205 * 330.00002 * 9 7 5 13 13 N 1.46501 * 109.47276 * 64.99901 * 3 2 1 14 14 C 1.34776 * 119.99895 * 275.00124 * 13 3 2 15 15 O 1.21704 * 120.00331 * 354.70188 * 14 13 3 16 16 C 1.46660 * 120.00004 * 174.70625 * 14 13 3 17 17 C 1.37910 * 126.16976 * 4.99022 * 16 14 13 18 18 C 1.40197 * 107.11008 * 179.90965 * 17 16 14 19 19 N 1.40784 * 126.12181 * 180.13499 * 18 17 16 20 20 C 1.34779 * 120.00130 * 180.28475 * 19 18 17 21 21 O 1.21532 * 119.99807 * 0.02562 * 20 19 18 22 22 O 1.34663 * 120.00190 * 180.02562 * 20 19 18 23 23 C 1.45198 * 116.99997 * 180.02562 * 22 20 19 24 24 C 1.53004 * 109.47242 * 150.00003 * 23 22 20 25 25 C 1.52998 * 109.47346 * 269.99822 * 23 22 20 26 26 C 1.35894 * 107.75478 * 0.35925 * 18 17 16 27 27 N 1.35861 * 108.77040 * 359.77987 * 26 18 17 28 28 C 1.46501 * 125.64624 * 179.97438 * 27 26 18 29 29 H 1.09003 * 109.46542 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47197 * 299.99652 * 1 2 3 31 31 H 1.09000 * 109.47335 * 60.00224 * 1 2 3 32 32 H 1.08998 * 109.47217 * 239.99791 * 2 1 3 33 33 H 1.09000 * 109.46842 * 119.99584 * 2 1 3 34 34 H 0.96999 * 119.99991 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00705 * 95.00254 * 13 3 2 36 36 H 1.07998 * 126.44261 * 0.04179 * 17 16 14 37 37 H 0.97001 * 120.00307 * 0.29492 * 19 18 17 38 38 H 1.09001 * 109.47199 * 30.00083 * 23 22 20 39 39 H 1.09001 * 109.46958 * 59.99932 * 24 23 22 40 40 H 1.09003 * 109.47028 * 180.02562 * 24 23 22 41 41 H 1.08995 * 109.46988 * 299.99965 * 24 23 22 42 42 H 1.09001 * 109.47184 * 300.00270 * 25 23 22 43 43 H 1.08999 * 109.47015 * 59.99803 * 25 23 22 44 44 H 1.08993 * 109.47484 * 179.97438 * 25 23 22 45 45 H 1.07999 * 125.61158 * 179.77273 * 26 18 17 46 46 H 1.09000 * 109.47064 * 274.89048 * 28 27 26 47 47 H 1.08993 * 109.47712 * 34.89384 * 28 27 26 48 48 H 1.09002 * 109.47192 * 154.89994 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1435 0.8735 -1.2252 8 7 3.4065 0.3320 -2.1702 9 14 6.0055 0.8690 -1.3749 10 1 6.5494 -0.3629 -0.7490 11 1 6.3868 0.9050 -2.8096 12 1 6.5604 2.0611 -0.6851 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6643 1.3669 15 8 -0.3052 2.7175 0.4023 16 6 0.0023 3.2172 2.6546 17 6 0.7677 3.3127 3.7978 18 6 -0.0360 3.9010 4.7843 19 7 0.3501 4.1872 6.1076 20 6 -0.5289 4.7522 6.9589 21 8 -1.6550 5.0142 6.5843 22 8 -0.1595 5.0264 8.2245 23 6 -1.1580 5.6343 9.0857 24 6 -0.9071 5.2119 10.5347 25 6 -1.0674 7.1576 8.9756 26 6 -1.2561 4.1411 4.2361 27 7 -1.2425 3.7287 2.9417 28 6 -2.3670 3.8139 2.0066 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8297 -0.0693 -2.9453 35 1 2.2717 2.1233 1.9978 36 1 1.7940 2.9959 3.9110 37 1 1.2488 3.9779 6.4067 38 1 -2.1510 5.3062 8.7784 39 1 0.0859 5.5399 10.8420 40 1 -1.6570 5.6678 11.1811 41 1 -0.9717 4.1267 10.6132 42 1 -0.0743 7.4856 9.2829 43 1 -1.2461 7.4585 7.9433 44 1 -1.8172 7.6139 9.6217 45 1 -2.0979 4.5862 4.7456 46 1 -3.0092 2.9419 2.1301 47 1 -2.9401 4.7187 2.2089 48 1 -1.9885 3.8444 0.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190880294.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:32 Heat of formation + Delta-G solvation = -74.533462 kcal Electronic energy + Delta-G solvation = -29284.263871 eV Core-core repulsion = 25147.266645 eV Total energy + Delta-G solvation = -4136.997226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50466 -40.51708 -38.58175 -37.32663 -35.25574 -34.89093 -33.45212 -32.66404 -31.75181 -30.87230 -28.73231 -27.68487 -26.81048 -26.32810 -23.42381 -23.27888 -22.20752 -21.20764 -20.45071 -19.74101 -19.39409 -18.58734 -17.84111 -16.78496 -16.44588 -16.22602 -15.58290 -15.36613 -15.05063 -14.94815 -14.71702 -14.20392 -14.15092 -14.08132 -13.57724 -13.48836 -12.98609 -12.76702 -12.71029 -12.69141 -12.48606 -12.41862 -12.18436 -12.08413 -11.94820 -11.51274 -11.29564 -11.26971 -10.99398 -10.88980 -10.83176 -10.72077 -10.54654 -10.32084 -10.20253 -9.67006 -9.17523 -9.03961 -8.51769 -8.33147 -7.91256 -7.59106 -6.13162 -4.22275 1.80526 1.84275 2.28416 2.95841 3.15486 3.24457 3.31700 3.33891 3.89629 3.97112 4.18876 4.40067 4.41403 4.52916 4.76564 4.94687 5.12382 5.16221 5.18437 5.28769 5.31470 5.37361 5.39579 5.42891 5.49696 5.63724 5.71485 5.77341 5.85792 5.99989 6.05541 6.24615 6.36185 6.42036 6.62130 6.84235 7.01158 7.03772 7.17294 7.32075 7.33003 7.38405 7.41057 7.61366 7.72430 7.88888 8.14176 8.16187 8.63426 8.76059 9.07550 9.44742 10.92225 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.002341 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.342535 B =11959.353761 C =13071.512847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.692 5.692 14 C 0.575 3.425 15 O -0.556 6.556 16 C -0.012 4.012 17 C -0.167 4.167 18 C 0.056 3.944 19 N -0.617 5.617 20 C 0.647 3.353 21 O -0.566 6.566 22 O -0.364 6.364 23 C 0.100 3.900 24 C -0.151 4.151 25 C -0.172 4.172 26 C -0.002 4.002 27 N -0.407 5.407 28 C 0.066 3.934 29 H 0.024 0.976 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.032 0.968 34 H 0.264 0.736 35 H 0.391 0.609 36 H 0.150 0.850 37 H 0.418 0.582 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.192 0.808 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 8.929 21.251 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.339 5.339 14 C 0.361 3.639 15 O -0.437 6.437 16 C -0.128 4.128 17 C -0.195 4.195 18 C -0.042 4.042 19 N -0.267 5.267 20 C 0.401 3.599 21 O -0.455 6.455 22 O -0.279 6.279 23 C 0.045 3.955 24 C -0.208 4.208 25 C -0.229 4.229 26 C -0.138 4.138 27 N -0.081 5.081 28 C -0.075 4.075 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.224 0.776 36 H 0.167 0.833 37 H 0.253 0.747 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.208 0.792 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.898 9.026 20.029 24.096 hybrid contribution 1.669 -0.106 0.563 1.765 sum -8.229 8.920 20.592 23.902 Atomic orbital electron populations 1.21820 0.98533 0.98247 1.00932 1.21949 0.92496 0.99766 1.02481 1.18840 0.94364 0.89064 0.80725 0.92971 1.21216 0.90582 1.38905 1.06479 0.91983 1.24878 0.98624 0.94800 0.95360 1.69885 1.35128 1.37501 1.09439 0.86448 0.84848 0.78452 0.77364 1.20551 1.21111 1.19837 1.46243 1.13750 1.55050 1.18856 1.16900 0.83148 0.78553 0.85344 1.90725 1.54255 1.59598 1.39102 1.20421 0.86404 1.09485 0.96501 1.20875 1.00017 1.07727 0.90860 1.16486 0.95200 1.09307 0.83167 1.41260 1.15337 1.61941 1.08189 1.17966 0.83576 0.77639 0.80749 1.90843 1.19946 1.57835 1.76866 1.86303 1.45097 1.75507 1.20984 1.22694 0.91424 0.92838 0.88549 1.21920 1.03300 1.02638 0.92943 1.22238 1.03018 0.94297 1.03357 1.22312 0.99947 1.07579 0.83997 1.43813 1.10227 1.44267 1.09768 1.22337 0.87410 1.02530 0.95255 0.95650 0.94591 0.93120 0.88086 0.94875 0.92554 0.77606 0.83265 0.74668 0.89306 0.91337 0.90128 0.91564 0.91585 0.91669 0.90633 0.79164 0.90821 0.90328 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.58 37.16 0.32 -2.69 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.67 2.25 -69.09 -0.16 6.52 16 4 H 0.05 1.48 7.51 -51.93 -0.39 1.09 16 5 C -0.53 -13.78 8.73 -34.44 -0.30 -14.08 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.27 11.28 55.43 0.63 -23.65 16 9 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 13 N -0.69 -14.21 5.01 -56.25 -0.28 -14.50 16 14 C 0.57 11.52 6.14 -12.86 -0.08 11.44 16 15 O -0.56 -12.45 12.11 5.19 0.06 -12.39 16 16 C -0.01 -0.21 6.88 -81.99 -0.56 -0.77 16 17 C -0.17 -2.41 10.37 -38.97 -0.40 -2.81 16 18 C 0.06 0.78 6.95 -83.85 -0.58 0.20 16 19 N -0.62 -7.12 5.48 -14.42 -0.08 -7.20 16 20 C 0.65 7.96 8.70 54.06 0.47 8.43 16 21 O -0.57 -8.09 12.75 -19.30 -0.25 -8.33 16 22 O -0.36 -3.75 9.93 -40.39 -0.40 -4.15 16 23 C 0.10 0.81 3.19 -26.73 -0.09 0.72 16 24 C -0.15 -0.83 9.57 37.16 0.36 -0.47 16 25 C -0.17 -1.20 9.55 37.16 0.35 -0.85 16 26 C 0.00 -0.03 10.27 -16.61 -0.17 -0.20 16 27 N -0.41 -6.24 3.17 -120.02 -0.38 -6.62 16 28 C 0.07 0.85 10.77 59.85 0.64 1.50 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.77 5.76 -51.93 -0.30 0.47 16 31 H 0.05 1.17 7.92 -51.93 -0.41 0.76 16 32 H 0.10 2.66 5.94 -51.93 -0.31 2.35 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.39 7.03 7.43 -40.82 -0.30 6.73 16 36 H 0.15 1.81 7.44 -52.49 -0.39 1.42 16 37 H 0.42 3.64 8.94 -40.82 -0.36 3.28 16 38 H 0.09 0.80 7.16 -51.93 -0.37 0.42 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.19 2.72 5.80 -52.49 -0.30 2.41 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.11 1.72 5.95 -51.93 -0.31 1.42 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -31.18 390.57 -7.49 -38.67 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -7.22 Total: 11.59 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.44 Total: 5.39 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.12 Total: -51.96 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.58 Total: -24.87 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.18 -7.49 -38.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190880294.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.862 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds