Wall clock time and date at job start Tue Mar 31 2020 20:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32997 * 119.99975 * 2 1 4 4 C 1.47102 * 119.99863 * 172.84803 * 3 2 1 5 5 O 1.21614 * 119.99903 * 354.11776 * 4 3 2 6 6 N 1.34777 * 119.99789 * 174.11189 * 4 3 2 7 7 C 1.46498 * 119.99966 * 180.02562 * 6 4 3 8 8 H 1.08999 * 110.29004 * 34.29707 * 7 6 4 9 9 C 1.54383 * 110.32115 * 272.17320 * 7 6 4 10 10 N 1.48720 * 104.51382 * 217.32089 * 9 7 6 11 11 C 1.46899 * 111.01496 * 158.96916 * 10 9 7 12 12 C 1.50700 * 109.47417 * 174.61645 * 11 10 9 13 13 O 1.21299 * 119.99863 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00346 * 179.97438 * 12 11 10 15 15 C 1.37096 * 120.00000 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00234 * 359.97438 * 15 14 12 17 17 C 1.38948 * 119.99651 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00188 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99958 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46942 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46881 * 119.99837 * 19 17 15 22 22 H 1.48496 * 109.47588 * 239.99995 * 19 17 15 23 23 C 1.48554 * 104.29121 * 39.36329 * 10 9 7 24 24 C 1.54254 * 110.32453 * 156.42561 * 7 6 4 25 25 H 1.09000 * 110.32544 * 359.89963 * 24 7 6 26 26 O 1.42902 * 110.32381 * 237.79034 * 24 7 6 27 27 C 1.50697 * 119.99830 * 179.97438 * 2 1 3 28 28 C 1.52998 * 117.50044 * 1.81014 * 27 2 1 29 29 C 1.53003 * 117.50207 * 293.14963 * 27 2 1 30 30 H 1.08993 * 109.47173 * 90.00163 * 1 2 3 31 31 H 1.09003 * 109.46851 * 329.99921 * 1 2 3 32 32 H 1.09001 * 109.47100 * 210.00428 * 1 2 3 33 33 H 1.07996 * 119.99951 * 352.84665 * 3 2 1 34 34 H 0.96996 * 119.99866 * 0.02562 * 6 4 3 35 35 H 1.08996 * 110.41120 * 336.02416 * 9 7 6 36 36 H 1.08999 * 110.40963 * 98.47088 * 9 7 6 37 37 H 1.09004 * 109.46924 * 294.61450 * 11 10 9 38 38 H 1.09000 * 109.47317 * 54.61330 * 11 10 9 39 39 H 0.97004 * 119.99719 * 0.02562 * 14 12 11 40 40 H 0.97005 * 120.00124 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.41549 * 201.79257 * 23 10 9 42 42 H 1.08997 * 110.41214 * 79.34896 * 23 10 9 43 43 H 0.96698 * 113.99757 * 180.02562 * 26 24 7 44 44 H 1.09004 * 115.54513 * 147.47792 * 27 2 1 45 45 H 1.08997 * 117.49953 * 359.97438 * 28 27 2 46 46 H 1.09005 * 117.49906 * 145.01463 * 28 27 2 47 47 H 1.08998 * 117.49655 * 214.98189 * 29 27 2 48 48 H 1.08997 * 117.49630 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6344 1.1567 0.1586 5 8 4.2238 0.1198 0.3965 6 7 4.3212 2.3103 0.0402 7 6 5.7777 2.3152 0.1976 8 1 6.2027 1.3888 -0.1887 9 6 6.1558 2.5002 1.6829 10 7 7.3661 3.3640 1.6546 11 6 7.5638 4.0363 2.9456 12 6 8.8657 4.7951 2.9228 13 8 9.5607 4.7772 1.9288 14 7 9.2577 5.4937 4.0066 15 6 10.4422 6.1836 3.9860 16 1 11.0615 6.1669 3.1013 17 6 10.8466 6.9033 5.1036 18 7 10.0939 6.9224 6.1805 19 14 12.4609 7.8427 5.0757 20 1 13.1165 7.6612 3.7557 21 1 12.1974 9.2865 5.3027 22 1 13.3519 7.3279 6.1464 23 6 7.0883 4.3494 0.5782 24 6 6.3910 3.5298 -0.5289 25 1 5.6086 4.1215 -1.0042 26 8 7.3447 3.0970 -1.5013 27 6 2.2605 -1.3051 0.0006 28 6 1.4390 -2.5951 -0.0417 29 6 2.1517 -2.1832 1.2488 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 0.8900 0.5139 32 1 -0.3633 -0.8900 0.5139 33 1 1.6383 2.0834 -0.1165 34 1 3.8511 3.1373 -0.1493 35 1 5.3483 2.9956 2.2219 36 1 6.3844 1.5373 2.1397 37 1 6.7421 4.7300 3.1236 38 1 7.5906 3.2928 3.7422 39 1 8.7020 5.5078 4.8016 40 1 10.3760 7.4251 6.9607 41 1 8.0188 4.7776 0.2053 42 1 6.4268 5.1349 0.9434 43 1 7.7636 3.8188 -1.9896 44 1 3.2137 -1.2978 -0.5282 45 1 0.3535 -2.4999 -0.0695 46 1 1.8518 -3.4367 -0.5980 47 1 3.0331 -2.7538 1.5411 48 1 1.5354 -1.8167 2.0698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191410188.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:49 Heat of formation + Delta-G solvation = -60.798492 kcal Electronic energy + Delta-G solvation = -28877.388400 eV Core-core repulsion = 24740.986767 eV Total energy + Delta-G solvation = -4136.401633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.41034 -39.26545 -38.06269 -37.55868 -35.61824 -34.46424 -33.80754 -33.68485 -31.26754 -30.29452 -28.62261 -27.84831 -26.40720 -24.36000 -23.61075 -22.56802 -21.56820 -21.29037 -20.73059 -19.22764 -18.84590 -17.89592 -17.60007 -17.02987 -16.29563 -16.02965 -15.75895 -15.52680 -15.15150 -14.73066 -14.51270 -14.38236 -14.08478 -13.92322 -13.83203 -13.46647 -13.32498 -13.12588 -12.88552 -12.72145 -12.62413 -12.15963 -11.92547 -11.87751 -11.80138 -11.58556 -11.50386 -11.24465 -11.05802 -10.94912 -10.77673 -10.64358 -10.34238 -10.22561 -10.00651 -9.70781 -9.50179 -9.33002 -9.08260 -8.51540 -8.03236 -7.94316 -6.41456 -3.82160 1.03319 2.91977 3.08027 3.16320 3.26885 3.34155 3.71674 3.90359 4.03485 4.15458 4.23138 4.26924 4.42664 4.57069 4.68942 4.76258 4.81673 4.84615 4.93824 4.99179 5.11537 5.15939 5.19751 5.23821 5.29727 5.33408 5.44247 5.47026 5.61734 5.64329 5.74659 5.82991 5.87215 5.87599 5.94614 5.98591 6.04335 6.24628 6.27104 6.27383 6.34533 7.03240 7.14943 7.35591 7.55647 7.67827 8.06647 8.12281 8.62215 9.18619 9.54835 10.06734 10.76436 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.001971 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.129501 B =14205.569524 C =14779.240423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.000 4.000 3 C -0.229 4.229 4 C 0.548 3.452 5 O -0.530 6.530 6 N -0.722 5.722 7 C 0.149 3.851 8 H 0.112 0.888 9 C 0.025 3.975 10 N -0.476 5.476 11 C 0.034 3.966 12 C 0.445 3.555 13 O -0.576 6.576 14 N -0.565 5.565 15 C -0.297 4.297 16 H 0.104 0.896 17 C 0.021 3.979 18 N -0.902 5.902 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.007 3.993 24 C 0.098 3.902 25 H 0.063 0.937 26 O -0.552 6.552 27 C -0.121 4.121 28 C -0.190 4.190 29 C -0.154 4.154 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.398 0.602 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.108 0.892 42 H 0.045 0.955 43 H 0.382 0.618 44 H 0.134 0.866 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.417 -10.592 -11.859 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.002 4.002 3 C -0.250 4.250 4 C 0.337 3.663 5 O -0.408 6.408 6 N -0.374 5.374 7 C 0.043 3.957 8 H 0.130 0.870 9 C -0.105 4.105 10 N -0.200 5.200 11 C -0.098 4.098 12 C 0.230 3.770 13 O -0.460 6.460 14 N -0.202 5.202 15 C -0.427 4.427 16 H 0.121 0.879 17 C -0.181 4.181 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.121 4.121 24 C 0.038 3.962 25 H 0.081 0.919 26 O -0.357 6.357 27 C -0.139 4.139 28 C -0.227 4.227 29 C -0.191 4.191 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.145 0.855 34 H 0.232 0.768 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.225 0.775 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.063 0.937 43 H 0.230 0.770 44 H 0.152 0.848 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.144 -12.134 -12.048 27.193 hybrid contribution -0.382 2.209 0.689 2.345 sum -21.526 -9.926 -11.359 26.285 Atomic orbital electron populations 1.21029 0.91106 1.03400 1.03065 1.21830 0.95211 0.93414 0.89716 1.22313 0.93255 0.98715 1.10725 1.18533 0.87789 0.83249 0.76697 1.90775 1.70932 1.31227 1.47863 1.45954 1.07351 1.10535 1.73524 1.21498 0.79076 1.00498 0.94581 0.86989 1.23576 0.92006 0.99368 0.95514 1.65152 1.33589 1.17426 1.03822 1.22090 0.97408 0.97856 0.92407 1.19678 0.88095 0.84128 0.85063 1.90507 1.56306 1.65908 1.33291 1.41866 1.21029 1.43648 1.13694 1.19745 0.97313 1.24677 1.00937 0.87856 1.25263 0.99582 0.98224 0.94985 1.69620 1.38272 1.42573 1.03919 0.85799 0.81262 0.78782 0.78496 1.19218 1.20820 1.20742 1.23913 1.01512 0.93859 0.92821 1.22665 0.90543 0.93880 0.89144 0.91905 1.86516 1.58483 1.37417 1.53303 1.21503 1.00665 0.87845 1.03883 1.23149 0.98988 0.98594 1.01948 1.22820 1.02731 1.02373 0.91205 0.90211 0.90879 0.90692 0.85456 0.76754 0.93509 0.89125 0.93270 0.89086 0.77524 0.91951 0.87363 0.93659 0.76983 0.84799 0.88684 0.88606 0.88363 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 9.49 36.01 0.34 -0.32 16 2 C 0.00 0.00 5.80 -101.17 -0.59 -0.59 16 3 C -0.23 -1.94 9.62 -37.81 -0.36 -2.30 16 4 C 0.55 6.26 7.67 -12.66 -0.10 6.17 16 5 O -0.53 -7.79 12.99 5.27 0.07 -7.72 16 6 N -0.72 -7.31 5.07 -53.65 -0.27 -7.58 16 7 C 0.15 1.94 3.19 -66.55 -0.21 1.72 16 8 H 0.11 1.76 7.44 -51.93 -0.39 1.38 16 9 C 0.02 0.35 6.22 -2.09 -0.01 0.34 16 10 N -0.48 -8.25 5.06 -231.27 -1.17 -9.42 16 11 C 0.03 0.63 5.30 -4.98 -0.03 0.60 16 12 C 0.45 10.60 7.58 -10.98 -0.08 10.52 16 13 O -0.58 -15.61 14.42 5.54 0.08 -15.53 16 14 N -0.57 -14.41 5.29 -10.96 -0.06 -14.47 16 15 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 16 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 18 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 19 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.01 0.11 5.54 -2.18 -0.01 0.10 16 24 C 0.10 1.21 4.18 -25.35 -0.11 1.11 16 25 H 0.06 0.59 7.65 -51.93 -0.40 0.19 16 26 O -0.55 -7.45 13.26 -35.23 -0.47 -7.91 16 27 C -0.12 -1.16 4.34 -91.77 -0.40 -1.56 16 28 C -0.19 -1.40 9.79 -26.69 -0.26 -1.66 16 29 C -0.15 -1.37 10.24 -26.69 -0.27 -1.64 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 32 H 0.07 0.35 6.38 -51.93 -0.33 0.02 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.40 2.86 8.31 -40.82 -0.34 2.52 16 35 H 0.05 0.61 7.91 -51.93 -0.41 0.20 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 38 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 39 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.11 1.95 6.85 -51.93 -0.36 1.60 16 42 H 0.05 0.64 7.82 -51.93 -0.41 0.23 16 43 H 0.38 3.65 9.12 45.56 0.42 4.07 16 44 H 0.13 1.61 6.23 -51.93 -0.32 1.29 16 45 H 0.09 0.55 6.31 -51.93 -0.33 0.22 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 394.41 15.07 5.94 5.94 Total: -1.00 -34.67 394.41 -8.99 -43.66 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -6.48 Total: 16.36 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -2.33 Total: 4.49 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.78 Total: -55.38 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.32 Total: -31.16 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.67 -8.99 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191410188.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.140 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds