Wall clock time and date at job start Tue Mar 31 2020 20:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32996 * 120.00073 * 2 1 4 4 C 1.47111 * 119.99806 * 357.87298 * 3 2 1 5 5 O 1.21614 * 119.99511 * 4.87695 * 4 3 2 6 6 N 1.34767 * 120.00089 * 184.88326 * 4 3 2 7 7 C 1.46504 * 120.00335 * 179.97438 * 6 4 3 8 8 H 1.09005 * 110.28449 * 34.29473 * 7 6 4 9 9 C 1.54377 * 110.32214 * 272.17420 * 7 6 4 10 10 N 1.48722 * 104.51347 * 217.31830 * 9 7 6 11 11 C 1.46894 * 111.01709 * 158.96300 * 10 9 7 12 12 C 1.50704 * 109.47648 * 174.61244 * 11 10 9 13 13 O 1.21298 * 119.99258 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00200 * 179.97438 * 12 11 10 15 15 C 1.37103 * 119.99556 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00191 * 0.02562 * 15 14 12 17 17 C 1.38958 * 119.99579 * 180.02562 * 15 14 12 18 18 N 1.31408 * 119.99761 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99760 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47199 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47331 * 120.00024 * 19 17 15 22 22 H 1.48502 * 109.47143 * 240.00058 * 19 17 15 23 23 C 1.48566 * 104.29002 * 39.35907 * 10 9 7 24 24 C 1.54259 * 110.32629 * 156.42099 * 7 6 4 25 25 H 1.08994 * 110.32071 * 359.90172 * 24 7 6 26 26 O 1.42896 * 110.32561 * 237.79163 * 24 7 6 27 27 C 1.50697 * 120.00439 * 180.02562 * 2 1 3 28 28 C 1.53000 * 117.49563 * 14.69481 * 27 2 1 29 29 C 1.52994 * 117.49932 * 306.03492 * 27 2 1 30 30 H 1.08997 * 109.47370 * 61.77699 * 1 2 3 31 31 H 1.09004 * 109.47002 * 181.77417 * 1 2 3 32 32 H 1.09001 * 109.47087 * 301.77119 * 1 2 3 33 33 H 1.07996 * 120.00720 * 177.58750 * 3 2 1 34 34 H 0.97005 * 120.00366 * 359.97438 * 6 4 3 35 35 H 1.09005 * 110.41096 * 336.02059 * 9 7 6 36 36 H 1.08993 * 110.41585 * 98.47240 * 9 7 6 37 37 H 1.08997 * 109.47325 * 294.61617 * 11 10 9 38 38 H 1.09004 * 109.47215 * 54.61453 * 11 10 9 39 39 H 0.97001 * 120.00265 * 0.02562 * 14 12 11 40 40 H 0.97005 * 119.99640 * 180.02562 * 18 17 15 41 41 H 1.09002 * 110.41253 * 201.79231 * 23 10 9 42 42 H 1.09003 * 110.40666 * 79.35465 * 23 10 9 43 43 H 0.96700 * 114.00116 * 180.02562 * 26 24 7 44 44 H 1.09002 * 115.55227 * 160.35899 * 27 2 1 45 45 H 1.09002 * 117.50250 * 359.97438 * 28 27 2 46 46 H 1.09001 * 117.49876 * 145.02263 * 28 27 2 47 47 H 1.09002 * 117.50149 * 214.97893 * 29 27 2 48 48 H 1.09005 * 117.50313 * 359.97229 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4371 2.4253 -0.0473 5 8 0.2220 2.4284 0.0032 6 7 2.1104 3.5885 -0.1466 7 6 1.3787 4.8568 -0.1943 8 1 0.4827 4.7997 0.4240 9 6 1.0036 5.2050 -1.6508 10 7 1.1596 6.6817 -1.7330 11 6 1.3289 7.1169 -3.1257 12 6 1.3510 8.6227 -3.1825 13 8 1.2373 9.2697 -2.1628 14 7 1.4980 9.2504 -4.3660 15 6 1.5185 10.6203 -4.4175 16 1 1.4173 11.1964 -3.5096 17 6 1.6696 11.2675 -5.6378 18 7 1.7923 10.5665 -6.7425 19 14 1.6983 13.1339 -5.7079 20 1 1.5420 13.6832 -4.3371 21 1 2.9916 13.5880 -6.2791 22 1 0.5835 13.6144 -6.5632 23 6 2.3794 6.9667 -0.9341 24 6 2.2821 6.0148 0.2773 25 1 3.2695 5.6393 0.5459 26 8 1.6879 6.6865 1.3898 27 6 2.2605 -1.3050 -0.0006 28 6 1.4769 -2.5731 -0.3454 29 6 1.9224 -2.3165 1.0964 30 1 -0.3634 0.4860 -0.9054 31 1 -0.3633 -1.0272 0.0318 32 1 -0.3633 0.5411 0.8737 33 1 3.2512 1.1523 0.0394 34 1 3.0796 3.5861 -0.1866 35 1 1.6828 4.7121 -2.3465 36 1 -0.0274 4.9179 -1.8569 37 1 2.2675 6.7248 -3.5174 38 1 0.5000 6.7428 -3.7266 39 1 1.5893 8.7330 -5.1814 40 1 1.8981 11.0183 -7.5943 41 1 2.3828 8.0050 -0.6025 42 1 3.2747 6.7499 -1.5170 43 1 2.2120 7.4250 1.7291 44 1 3.2977 -1.2489 -0.3311 45 1 0.4162 -2.4635 -0.5715 46 1 1.9987 -3.3513 -0.9024 47 1 2.7371 -2.9261 1.4874 48 1 1.1552 -2.0379 1.8189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191410189.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:52 Heat of formation + Delta-G solvation = -62.974618 kcal Electronic energy + Delta-G solvation = -28670.581971 eV Core-core repulsion = 24534.085974 eV Total energy + Delta-G solvation = -4136.495997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40644 -39.25888 -38.27398 -37.72825 -35.62815 -34.57958 -33.79595 -33.44692 -31.26932 -30.29901 -28.40836 -27.73374 -26.42640 -24.58518 -23.97572 -22.85397 -21.53426 -21.09872 -20.70740 -19.22117 -18.80510 -17.89881 -17.54307 -16.89149 -16.67708 -16.02161 -15.88902 -15.48852 -15.06388 -14.98659 -14.63861 -14.52221 -14.09459 -13.88421 -13.74693 -13.40401 -13.30585 -13.00945 -12.85515 -12.72346 -12.36827 -12.08309 -11.94427 -11.91739 -11.84474 -11.63338 -11.50081 -11.37044 -11.24291 -10.95173 -10.92909 -10.77482 -10.34172 -10.22504 -10.02540 -9.73775 -9.50089 -9.44248 -9.08753 -8.51587 -8.03282 -7.94297 -6.41473 -3.82151 1.03684 2.89091 3.04758 3.16394 3.26978 3.34234 3.47465 3.90380 4.00828 4.08940 4.18099 4.28512 4.36353 4.44478 4.53977 4.56423 4.70674 4.77086 4.92534 4.94047 5.12003 5.16819 5.23661 5.29149 5.29858 5.41631 5.43941 5.56764 5.60082 5.61736 5.63585 5.74218 5.79338 5.82778 5.87399 5.99307 6.16438 6.22280 6.25677 6.27288 6.34072 7.02966 7.14783 7.34362 7.55678 7.67892 8.06713 8.09960 8.62230 9.18645 9.54880 10.06774 10.76439 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023669 B = 0.001878 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.692367 B =14903.143406 C =15638.851575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.002 3.998 3 C -0.230 4.230 4 C 0.548 3.452 5 O -0.535 6.535 6 N -0.721 5.721 7 C 0.149 3.851 8 H 0.113 0.887 9 C 0.025 3.975 10 N -0.476 5.476 11 C 0.034 3.966 12 C 0.445 3.555 13 O -0.576 6.576 14 N -0.565 5.565 15 C -0.298 4.298 16 H 0.104 0.896 17 C 0.021 3.979 18 N -0.902 5.902 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.007 3.993 24 C 0.098 3.902 25 H 0.063 0.937 26 O -0.552 6.552 27 C -0.135 4.135 28 C -0.172 4.172 29 C -0.165 4.165 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.398 0.602 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.108 0.892 42 H 0.045 0.955 43 H 0.382 0.618 44 H 0.115 0.885 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 -24.826 12.146 28.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.001 3.999 3 C -0.251 4.251 4 C 0.338 3.662 5 O -0.414 6.414 6 N -0.373 5.373 7 C 0.043 3.957 8 H 0.130 0.870 9 C -0.105 4.105 10 N -0.200 5.200 11 C -0.098 4.098 12 C 0.230 3.770 13 O -0.460 6.460 14 N -0.202 5.202 15 C -0.427 4.427 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.121 4.121 24 C 0.038 3.962 25 H 0.081 0.919 26 O -0.357 6.357 27 C -0.153 4.153 28 C -0.209 4.209 29 C -0.202 4.202 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.143 0.857 34 H 0.233 0.767 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.225 0.775 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.064 0.936 43 H 0.230 0.770 44 H 0.133 0.867 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.378 -24.445 12.784 27.792 hybrid contribution 1.990 0.682 -1.191 2.417 sum 5.368 -23.763 11.593 26.979 Atomic orbital electron populations 1.21121 0.90585 1.01315 1.04714 1.21803 0.96262 0.92325 0.89548 1.22231 1.00045 0.91660 1.11175 1.18492 0.87443 0.84080 0.76202 1.90804 1.13668 1.87370 1.49512 1.45925 1.10079 1.05660 1.75628 1.21507 0.96205 0.81193 0.96775 0.86957 1.23578 1.02499 0.89307 0.95103 1.65155 1.35015 1.09982 1.09820 1.22091 1.01191 0.96469 0.90019 1.19674 0.84393 0.88186 0.84709 1.90507 1.54691 1.66904 1.33904 1.41864 1.63788 1.07412 1.07165 1.19752 1.46636 0.81381 0.94944 0.87851 1.25263 0.97376 1.00611 0.94769 1.69622 1.50077 1.36259 0.98425 0.85798 0.77675 0.82315 0.78544 1.19219 1.20819 1.20747 1.23916 0.91527 1.02254 0.94413 1.22660 0.94570 0.92054 0.86943 0.91899 1.86515 1.51305 1.49932 1.47962 1.21298 0.99719 0.88430 1.05894 1.23123 1.01267 0.98058 0.98462 1.22999 1.03874 1.01292 0.92046 0.89706 0.92682 0.89523 0.85677 0.76709 0.93493 0.89118 0.93267 0.89087 0.77525 0.91953 0.87350 0.93650 0.76976 0.86656 0.87797 0.88191 0.88163 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.06 36.00 0.29 -0.82 16 2 C 0.00 0.02 5.83 -101.17 -0.59 -0.57 16 3 C -0.23 -1.99 9.67 -37.80 -0.37 -2.36 16 4 C 0.55 6.29 7.72 -12.67 -0.10 6.20 16 5 O -0.53 -7.86 12.76 5.27 0.07 -7.79 16 6 N -0.72 -7.36 5.07 -53.64 -0.27 -7.63 16 7 C 0.15 1.94 3.19 -66.55 -0.21 1.72 16 8 H 0.11 1.77 7.44 -51.93 -0.39 1.39 16 9 C 0.02 0.35 6.22 -2.09 -0.01 0.34 16 10 N -0.48 -8.24 5.06 -231.27 -1.17 -9.41 16 11 C 0.03 0.62 5.30 -4.98 -0.03 0.60 16 12 C 0.45 10.59 7.59 -10.99 -0.08 10.51 16 13 O -0.58 -15.59 14.42 5.54 0.08 -15.51 16 14 N -0.57 -14.40 5.29 -10.96 -0.06 -14.46 16 15 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 16 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 19 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.01 0.11 5.55 -2.18 -0.01 0.10 16 24 C 0.10 1.22 4.18 -25.35 -0.11 1.11 16 25 H 0.06 0.59 7.65 -51.93 -0.40 0.20 16 26 O -0.55 -7.46 13.26 -35.23 -0.47 -7.93 16 27 C -0.14 -0.84 6.00 -91.78 -0.55 -1.39 16 28 C -0.17 -0.90 9.80 -26.69 -0.26 -1.16 16 29 C -0.17 -0.85 10.10 -26.70 -0.27 -1.12 16 30 H 0.08 0.91 7.34 -51.93 -0.38 0.53 16 31 H 0.05 0.39 5.66 -51.93 -0.29 0.10 16 32 H 0.09 0.93 7.10 -51.93 -0.37 0.56 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.40 2.90 8.31 -40.82 -0.34 2.56 16 35 H 0.05 0.61 7.91 -51.93 -0.41 0.20 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 38 H 0.09 1.55 8.13 -51.93 -0.42 1.12 16 39 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.11 1.96 6.85 -51.93 -0.36 1.60 16 42 H 0.05 0.64 7.82 -51.93 -0.41 0.23 16 43 H 0.38 3.66 9.12 45.56 0.42 4.08 16 44 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.55 6.19 -51.93 -0.32 0.23 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 393.71 15.07 5.93 5.93 Total: -1.00 -34.54 393.71 -9.17 -43.71 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -6.45 Total: 15.75 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -2.54 Total: 5.16 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.78 Total: -55.40 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.32 Total: -31.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.54 -9.17 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191410189.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.268 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds