Wall clock time and date at job start Tue Mar 31 2020 19:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32876 * 1 3 3 C 1.47119 * 119.99978 * 2 1 4 4 C 1.50702 * 119.99803 * 5.49346 * 3 2 1 5 5 C 1.32862 * 119.99722 * 185.49285 * 3 2 1 6 6 C 1.50694 * 120.00624 * 6.25259 * 5 3 2 7 7 C 1.50698 * 109.47798 * 126.12007 * 6 5 3 8 8 O 1.21280 * 119.99417 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00468 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00086 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.29045 * 35.67395 * 10 9 7 12 12 C 1.54388 * 110.32336 * 273.54606 * 10 9 7 13 13 N 1.48564 * 104.59435 * 217.25247 * 12 10 9 14 14 C 1.46893 * 110.99836 * 159.03979 * 13 12 10 15 15 C 1.50700 * 109.47313 * 169.99932 * 14 13 12 16 16 O 1.21302 * 119.99444 * 359.72234 * 15 14 13 17 17 N 1.34770 * 120.00193 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00074 * 179.72558 * 17 15 14 19 19 H 1.08009 * 119.99561 * 359.97438 * 18 17 15 20 20 C 1.38942 * 120.00241 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00036 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00196 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47008 * 89.99824 * 22 20 18 24 24 H 1.48495 * 109.47162 * 209.99577 * 22 20 18 25 25 H 1.48495 * 109.46881 * 330.00255 * 22 20 18 26 26 C 1.48553 * 104.22111 * 39.48354 * 13 12 10 27 27 C 1.54260 * 110.32548 * 157.91128 * 10 9 7 28 28 H 1.08998 * 110.32424 * 237.89075 * 27 10 9 29 29 O 1.42903 * 110.32420 * 359.97438 * 27 10 9 30 30 H 1.07998 * 120.00178 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99465 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.99668 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.46986 * 270.00216 * 4 3 2 34 34 H 1.08997 * 109.47193 * 29.99976 * 4 3 2 35 35 H 1.08994 * 109.47103 * 150.00284 * 4 3 2 36 36 H 1.07998 * 119.99700 * 186.24730 * 5 3 2 37 37 H 1.09004 * 109.47110 * 6.12311 * 6 5 3 38 38 H 1.09003 * 109.47395 * 246.12772 * 6 5 3 39 39 H 0.97005 * 119.99586 * 0.02562 * 9 7 6 40 40 H 1.08999 * 110.40951 * 98.47327 * 12 10 9 41 41 H 1.08997 * 110.40822 * 336.03426 * 12 10 9 42 42 H 1.08998 * 109.47258 * 50.00162 * 14 13 12 43 43 H 1.08995 * 109.47290 * 289.99893 * 14 13 12 44 44 H 0.96993 * 120.00131 * 359.72034 * 17 15 14 45 45 H 0.97002 * 120.00047 * 179.97438 * 21 20 18 46 46 H 1.08994 * 110.41497 * 79.29574 * 26 13 12 47 47 H 1.09008 * 110.41199 * 201.73683 * 26 13 12 48 48 H 0.96698 * 114.00492 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3160 2.5762 0.1249 5 6 3.3884 1.2767 -0.1101 6 6 4.1250 -0.0108 -0.3762 7 6 5.0037 0.1545 -1.5893 8 8 5.0295 1.2137 -2.1794 9 7 5.7607 -0.8747 -2.0184 10 6 6.6153 -0.7138 -3.1973 11 1 7.0240 0.2960 -3.2329 12 6 5.8164 -1.0147 -4.4837 13 7 6.7843 -1.7085 -5.3718 14 6 6.0871 -2.4885 -6.4030 15 6 7.0828 -2.9742 -7.4246 16 8 8.2571 -2.6935 -7.3080 17 7 6.6676 -3.7153 -8.4709 18 6 7.5727 -4.1525 -9.4034 19 1 8.6184 -3.9025 -9.2995 20 6 7.1449 -4.9169 -10.4818 21 7 5.8728 -5.2214 -10.6078 22 14 8.3779 -5.5119 -11.7526 23 1 8.9102 -6.8366 -11.3436 24 1 7.7087 -5.6335 -13.0726 25 1 9.4952 -4.5388 -11.8517 26 6 7.5469 -2.5967 -4.4573 27 6 7.7537 -1.7546 -3.1799 28 1 8.7227 -1.2562 -3.2060 29 8 7.6531 -2.5810 -2.0184 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5399 -0.9354 0.0004 32 1 1.8687 -0.9353 0.0004 33 1 1.0503 2.9393 -0.8679 34 1 0.4092 2.4195 0.7091 35 1 1.9471 3.3115 0.6239 36 1 3.9368 2.2015 -0.0091 37 1 3.4061 -0.8105 -0.5546 38 1 4.7411 -0.2621 0.4872 39 1 5.7396 -1.7220 -1.5465 40 1 5.4746 -0.0878 -4.9444 41 1 4.9700 -1.6648 -4.2623 42 1 5.3421 -1.8607 -6.8917 43 1 5.5945 -3.3438 -5.9405 44 1 5.7286 -3.9395 -8.5642 45 1 5.5740 -5.7548 -11.3609 46 1 6.9714 -3.4944 -4.2317 47 1 8.5082 -2.8611 -4.8980 48 1 8.3438 -3.2546 -1.9538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220170039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:32 Heat of formation + Delta-G solvation = -73.011763 kcal Electronic energy + Delta-G solvation = -28616.922151 eV Core-core repulsion = 24479.990911 eV Total energy + Delta-G solvation = -4136.931240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.36294 -39.06994 -37.90869 -37.12423 -35.85004 -34.33517 -33.81073 -32.35413 -31.29206 -30.64979 -29.85037 -28.06987 -26.66283 -25.50940 -24.20271 -22.24605 -21.56627 -21.01300 -20.47174 -19.20521 -17.97993 -17.89599 -17.75958 -17.15405 -16.30183 -16.10775 -16.00640 -15.37888 -15.01235 -14.94660 -14.72529 -14.59091 -14.13566 -13.94500 -13.70836 -13.53917 -13.39459 -13.01413 -12.89164 -12.87782 -12.66127 -12.40894 -12.12784 -12.04531 -11.80789 -11.56018 -11.46677 -11.32433 -11.10970 -10.96526 -10.88811 -10.74830 -10.40280 -10.23340 -10.14114 -9.99876 -9.50686 -9.17329 -8.58987 -8.51630 -8.08103 -7.96671 -6.42518 -3.83468 1.04252 2.52005 2.65328 3.02312 3.16741 3.25593 3.31633 3.85698 3.89530 4.10093 4.29112 4.34462 4.53252 4.55795 4.57434 4.64895 4.83349 5.01648 5.04157 5.13605 5.14551 5.22542 5.22550 5.25845 5.35013 5.38061 5.42330 5.47367 5.62715 5.72816 5.73701 5.80947 5.91674 5.95757 6.07144 6.13271 6.15359 6.23227 6.31379 6.41692 6.63707 6.94245 7.07657 7.37210 7.45741 7.54197 8.04949 8.14332 8.60683 9.17145 9.53366 10.05103 10.75258 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.001987 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.965035 B =14091.119001 C =15053.257965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.118 4.118 7 C 0.515 3.485 8 O -0.538 6.538 9 N -0.712 5.712 10 C 0.152 3.848 11 H 0.105 0.895 12 C 0.020 3.980 13 N -0.477 5.477 14 C 0.036 3.964 15 C 0.445 3.555 16 O -0.578 6.578 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.006 3.994 27 C 0.095 3.905 28 H 0.079 0.921 29 O -0.568 6.568 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.410 0.590 40 H 0.090 0.910 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.050 0.950 47 H 0.102 0.898 48 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 7.207 23.921 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.145 4.145 3 C -0.110 4.110 4 C -0.171 4.171 5 C -0.137 4.137 6 C -0.157 4.157 7 C 0.301 3.699 8 O -0.415 6.415 9 N -0.365 5.365 10 C 0.046 3.954 11 H 0.123 0.877 12 C -0.109 4.109 13 N -0.202 5.202 14 C -0.096 4.096 15 C 0.230 3.770 16 O -0.461 6.461 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.122 4.122 27 C 0.035 3.965 28 H 0.097 0.903 29 O -0.374 6.374 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.246 0.754 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.120 0.880 48 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.253 8.796 23.237 25.883 hybrid contribution -0.163 -1.987 -0.437 2.041 sum -7.416 6.809 22.800 24.924 Atomic orbital electron populations 1.24446 0.95756 1.02109 0.99567 1.21975 0.95397 0.96304 1.00821 1.20572 0.93860 0.94390 1.02169 1.20783 0.99982 0.94132 1.02244 1.22774 0.94025 0.97732 0.99131 1.20817 0.99104 0.98762 0.97050 1.20569 0.80054 0.83760 0.85490 1.90716 1.65734 1.27094 1.57961 1.45815 1.44265 1.15980 1.30469 1.21718 0.89341 0.99699 0.84613 0.87748 1.23613 0.94566 1.00145 0.92589 1.65086 1.20534 1.25283 1.09295 1.22068 0.96412 0.96929 0.94188 1.19663 0.89274 0.83800 0.84216 1.90506 1.17924 1.60516 1.77192 1.41858 1.10837 1.46131 1.21355 1.19692 0.92299 1.29168 1.01618 0.87914 1.25265 0.96747 0.97367 0.98636 1.69613 1.14144 1.38819 1.31769 0.85853 0.79979 0.79077 0.79352 1.20459 1.20920 1.19402 1.23904 1.01559 0.94673 0.92104 1.22846 0.98408 0.90811 0.84477 0.90281 1.86224 1.56739 1.50451 1.44014 0.88070 0.88112 0.86533 0.91189 0.91820 0.91619 0.86185 0.88027 0.87918 0.75371 0.89141 0.93373 0.89096 0.93067 0.77515 0.91877 0.93142 0.87991 0.76465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 14.07 28.88 0.41 -0.83 16 2 C -0.13 -0.98 9.20 -37.83 -0.35 -1.33 16 3 C -0.11 -0.94 5.98 -102.87 -0.61 -1.55 16 4 C -0.11 -0.82 9.38 36.01 0.34 -0.48 16 5 C -0.12 -1.07 8.43 -36.16 -0.31 -1.38 16 6 C -0.12 -0.94 5.92 -29.04 -0.17 -1.12 16 7 C 0.51 5.89 7.82 -10.99 -0.09 5.80 16 8 O -0.54 -8.27 15.73 5.56 0.09 -8.19 16 9 N -0.71 -7.48 4.90 -52.47 -0.26 -7.74 16 10 C 0.15 1.89 3.36 -66.55 -0.22 1.66 16 11 H 0.10 1.42 7.64 -51.93 -0.40 1.02 16 12 C 0.02 0.28 6.17 -2.18 -0.01 0.27 16 13 N -0.48 -7.93 4.97 -231.41 -1.15 -9.08 16 14 C 0.04 0.64 5.32 -4.98 -0.03 0.62 16 15 C 0.45 10.48 7.63 -10.99 -0.08 10.40 16 16 O -0.58 -15.45 14.81 5.54 0.08 -15.36 16 17 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 19 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 22 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 26 C 0.01 0.09 5.66 -2.18 -0.01 0.08 16 27 C 0.09 1.08 4.42 -25.35 -0.11 0.96 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 O -0.57 -5.07 11.49 -35.23 -0.40 -5.48 16 30 H 0.10 0.63 6.31 -52.49 -0.33 0.29 16 31 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.12 0.76 6.00 -52.49 -0.31 0.44 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.38 6.67 -51.93 -0.35 0.03 16 35 H 0.06 0.43 8.06 -51.93 -0.42 0.01 16 36 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16 37 H 0.10 0.68 5.41 -51.93 -0.28 0.40 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.41 3.65 7.18 -40.82 -0.29 3.36 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 42 H 0.09 1.52 8.08 -51.93 -0.42 1.10 16 43 H 0.05 0.84 7.77 -51.93 -0.40 0.43 16 44 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 46 H 0.05 0.71 7.69 -51.93 -0.40 0.31 16 47 H 0.10 1.72 7.25 -51.92 -0.38 1.34 16 48 H 0.39 2.12 9.12 45.56 0.42 2.53 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -33.97 396.77 -7.86 -41.83 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -6.34 Total: 15.08 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.49 Total: 5.14 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.74 Total: -54.99 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.24 Total: -29.03 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.97 -7.86 -41.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220170039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.180 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds