Wall clock time and date at job start Tue Mar 31 2020 20:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47096 * 2 1 4 4 H 1.08996 * 109.47425 * 54.34514 * 3 2 1 5 5 C 1.50699 * 109.47006 * 174.34071 * 3 2 1 6 6 O 1.21280 * 120.00354 * 123.56212 * 5 3 2 7 7 N 1.34783 * 120.00042 * 303.55734 * 5 3 2 8 8 C 1.46499 * 119.99676 * 175.29378 * 7 5 3 9 9 H 1.08994 * 110.91898 * 31.10590 * 8 7 5 10 10 C 1.54911 * 111.00759 * 267.19547 * 8 7 5 11 11 N 1.47420 * 104.83246 * 204.92155 * 10 8 7 12 12 C 1.36944 * 125.64394 * 204.09827 * 11 10 8 13 13 H 1.08000 * 120.00152 * 0.02562 * 12 11 10 14 14 C 1.38820 * 119.99748 * 180.02562 * 12 11 10 15 15 N 1.31621 * 119.99791 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99841 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47262 * 90.00114 * 16 14 12 18 18 H 1.48501 * 109.46766 * 210.00134 * 16 14 12 19 19 H 1.48503 * 109.47102 * 329.99561 * 16 14 12 20 20 C 1.47016 * 108.70602 * 24.12901 * 11 10 8 21 21 C 1.54329 * 107.27092 * 358.94254 * 20 11 10 22 22 H 1.08998 * 110.71317 * 219.26558 * 21 20 11 23 23 O 1.42902 * 110.71873 * 96.16679 * 21 20 11 24 24 C 1.50702 * 109.47355 * 294.33676 * 3 2 1 25 25 C 1.41381 * 128.00950 * 299.68290 * 24 3 2 26 26 C 1.50700 * 126.79869 * 0.03204 * 25 24 3 27 27 N 1.30178 * 106.39229 * 179.89213 * 25 24 3 28 28 O 1.20921 * 111.60481 * 0.38870 * 27 25 24 29 29 C 1.34035 * 111.57075 * 359.74527 * 28 27 25 30 30 C 1.50698 * 126.77697 * 179.97438 * 29 28 27 31 31 H 1.09000 * 109.47581 * 175.30980 * 1 2 3 32 32 H 1.09003 * 109.47317 * 295.31421 * 1 2 3 33 33 H 1.09004 * 109.47186 * 55.30783 * 1 2 3 34 34 H 1.09006 * 109.47096 * 240.00161 * 2 1 3 35 35 H 1.09001 * 109.46884 * 119.99975 * 2 1 3 36 36 H 0.96993 * 119.99721 * 355.30456 * 7 5 3 37 37 H 1.09003 * 110.36118 * 86.08206 * 10 8 7 38 38 H 1.08994 * 110.45821 * 323.81018 * 10 8 7 39 39 H 0.96999 * 119.99829 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.88674 * 239.52260 * 20 11 10 41 41 H 1.08996 * 110.01038 * 118.42968 * 20 11 10 42 42 H 0.96703 * 113.99454 * 61.45687 * 23 21 20 43 43 H 1.08993 * 109.47027 * 90.00282 * 26 25 24 44 44 H 1.09005 * 109.46239 * 210.00001 * 26 25 24 45 45 H 1.08998 * 109.47010 * 329.99531 * 26 25 24 46 46 H 1.09001 * 109.47514 * 269.99776 * 30 29 28 47 47 H 1.08993 * 109.47081 * 30.00613 * 30 29 28 48 48 H 1.09005 * 109.47011 * 150.00073 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5963 1.9847 0.8350 5 6 3.5404 1.4448 0.1401 6 8 4.2265 1.9972 -0.6935 7 7 4.1199 0.8329 1.1919 8 6 5.5800 0.7454 1.2751 9 1 6.0491 1.6066 0.7995 10 6 6.0931 -0.5788 0.6563 11 7 7.3869 -0.8279 1.3177 12 6 8.4113 -1.5810 0.8090 13 1 8.3071 -2.0520 -0.1573 14 6 9.5836 -1.7391 1.5354 15 7 9.7108 -1.1647 2.7128 16 14 10.9807 -2.7669 0.8417 17 1 11.8847 -1.8997 0.0444 18 1 11.7428 -3.3833 1.9573 19 1 10.4251 -3.8350 -0.0277 20 6 7.3949 -0.1347 2.6141 21 6 6.0453 0.6017 2.7483 22 1 6.1839 1.5798 3.2090 23 8 5.1146 -0.1813 3.4985 24 6 1.6554 2.1113 -1.2946 25 6 2.0197 1.7387 -2.6088 26 6 2.8857 0.5721 -3.0090 27 7 1.4565 2.6012 -3.4047 28 8 0.8249 3.4286 -2.7893 29 6 0.8853 3.2121 -1.4680 30 6 0.2269 4.0319 -0.3884 31 1 -0.3634 -1.0242 -0.0840 32 1 -0.3634 0.4394 0.9290 33 1 -0.3634 0.5849 -0.8450 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.5703 0.4504 1.8936 37 1 6.2322 -0.4661 -0.4189 38 1 5.3976 -1.3915 0.8651 39 1 10.5298 -1.2754 3.2205 40 1 8.2140 0.5838 2.6453 41 1 7.5049 -0.8572 3.4228 42 1 5.3965 -0.3656 4.4049 43 1 2.2609 -0.3068 -3.1673 44 1 3.4152 0.8123 -3.9311 45 1 3.6075 0.3674 -2.2184 46 1 0.9047 4.8235 -0.0689 47 1 -0.6908 4.4738 -0.7764 48 1 -0.0094 3.3911 0.4612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220546021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:43 Heat of formation + Delta-G solvation = -6.699505 kcal Electronic energy + Delta-G solvation = -30698.279041 eV Core-core repulsion = 26564.223316 eV Total energy + Delta-G solvation = -4134.055725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.93435 -40.01276 -38.14011 -36.13872 -34.86457 -34.25217 -33.77654 -32.93980 -31.62933 -29.18453 -28.64886 -28.35758 -27.47922 -26.63569 -24.45848 -22.96944 -21.95098 -20.59306 -20.36284 -20.13375 -19.77220 -17.83430 -17.47804 -17.02837 -16.79614 -16.52778 -15.61556 -15.24353 -14.88638 -14.65987 -14.22962 -14.15609 -14.05276 -13.60644 -13.53767 -13.22065 -13.19237 -13.09964 -12.84026 -12.71379 -12.65812 -12.44309 -12.33815 -12.26511 -12.08329 -11.46521 -11.32749 -11.18582 -10.99173 -10.86174 -10.78304 -10.55872 -10.46782 -10.14693 -9.86493 -9.84075 -9.62918 -9.37398 -9.13764 -8.73366 -8.65771 -6.91317 -5.78380 -3.11485 1.41395 2.20697 2.72672 3.04278 3.35376 3.38388 3.43544 3.45205 4.14152 4.36772 4.40335 4.48551 4.58227 4.66997 4.76291 4.95317 4.99441 5.12810 5.18015 5.21179 5.26085 5.27784 5.35247 5.44834 5.51495 5.52943 5.59335 5.61312 5.67571 5.72061 5.75964 5.84043 5.89546 5.92118 6.01894 6.06213 6.18597 6.22946 6.56096 6.60027 6.89434 7.28703 7.40360 7.68758 7.77331 8.03079 8.16128 8.30700 8.41833 9.14326 9.74541 10.38532 11.33830 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.002917 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.531213 B = 9596.064006 C =10265.448535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.028 4.028 4 H 0.106 0.894 5 C 0.513 3.487 6 O -0.532 6.532 7 N -0.706 5.706 8 C 0.138 3.862 9 H 0.105 0.895 10 C 0.132 3.868 11 N -0.600 5.600 12 C -0.225 4.225 13 H 0.079 0.921 14 C -0.009 4.009 15 N -0.926 5.926 16 Si 0.914 3.086 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.154 3.846 21 C 0.068 3.932 22 H 0.060 0.940 23 O -0.569 6.569 24 C -0.171 4.171 25 C 0.054 3.946 26 C -0.079 4.079 27 N -0.373 5.373 28 O 0.093 5.907 29 C -0.034 4.034 30 C -0.073 4.073 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.407 0.593 37 H 0.042 0.958 38 H 0.026 0.974 39 H 0.253 0.747 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.380 0.620 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.226 6.784 -0.092 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.050 4.050 4 H 0.124 0.876 5 C 0.298 3.702 6 O -0.408 6.408 7 N -0.357 5.357 8 C 0.033 3.967 9 H 0.123 0.877 10 C 0.005 3.995 11 N -0.327 5.327 12 C -0.354 4.354 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.574 5.574 16 Si 0.745 3.255 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.206 1.206 20 C 0.028 3.972 21 C 0.008 3.992 22 H 0.078 0.922 23 O -0.375 6.375 24 C -0.175 4.175 25 C -0.105 4.105 26 C -0.136 4.136 27 N -0.080 5.080 28 O 0.030 5.970 29 C -0.097 4.097 30 C -0.131 4.131 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.242 0.758 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.228 0.772 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.857 7.291 -2.522 22.238 hybrid contribution 1.164 -0.949 1.331 2.007 sum -19.693 6.342 -1.192 20.723 Atomic orbital electron populations 1.21755 0.94868 1.02082 1.01902 1.21591 0.96761 0.93398 1.03743 1.19626 0.93226 0.97834 0.94276 0.87596 1.20365 0.89604 0.78475 0.81729 1.90731 1.64758 1.43845 1.41475 1.45742 1.07844 1.58054 1.24087 1.22356 0.79115 1.00389 0.94881 0.87724 1.21821 0.88634 0.93027 0.96035 1.44265 1.12278 1.58820 1.17329 1.19090 0.92084 1.22727 1.01463 0.90268 1.24792 0.98114 1.00714 0.96826 1.69910 1.26871 1.47926 1.12699 0.86075 0.82063 0.79671 0.77714 1.21522 1.21657 1.20642 1.21870 0.90686 0.95156 0.89469 1.23502 0.91456 0.93597 0.90654 0.92199 1.86216 1.47373 1.74995 1.28947 1.20217 1.03439 0.98579 0.95233 1.23253 0.99253 0.98563 0.89456 1.20261 0.97639 0.92358 1.03384 1.73810 1.11047 1.02458 1.20716 1.84777 1.54235 1.41901 1.16101 1.24106 1.01709 0.97712 0.86191 1.20327 1.00582 0.98968 0.93204 0.92215 0.92449 0.92714 0.90815 0.90334 0.75761 0.93976 0.95621 0.93704 0.92678 0.92920 0.77185 0.90657 0.90656 0.89314 0.89444 0.89864 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.81 37.15 0.36 -0.73 16 2 C -0.12 -1.06 5.29 -26.74 -0.14 -1.21 16 3 C -0.03 -0.29 2.50 -92.92 -0.23 -0.52 16 4 H 0.11 0.85 7.13 -51.93 -0.37 0.48 16 5 C 0.51 7.31 6.35 -10.98 -0.07 7.24 16 6 O -0.53 -9.71 13.86 5.56 0.08 -9.64 16 7 N -0.71 -9.94 4.96 -51.73 -0.26 -10.20 16 8 C 0.14 2.45 3.34 -65.78 -0.22 2.23 16 9 H 0.10 2.04 7.48 -51.93 -0.39 1.65 16 10 C 0.13 2.78 6.92 -2.53 -0.02 2.77 16 11 N -0.60 -15.07 3.39 -170.08 -0.58 -15.65 16 12 C -0.23 -6.25 10.28 -15.05 -0.15 -6.41 16 13 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 14 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 15 N -0.93 -26.44 10.31 55.49 0.57 -25.86 16 16 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.15 3.50 5.13 -3.06 -0.02 3.49 16 21 C 0.07 1.17 4.20 -24.89 -0.10 1.06 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 23 O -0.57 -8.48 12.15 -35.23 -0.43 -8.90 16 24 C -0.17 -2.07 3.38 -104.42 -0.35 -2.43 16 25 C 0.05 0.76 6.69 -82.10 -0.55 0.21 16 26 C -0.08 -1.04 8.90 36.01 0.32 -0.72 16 27 N -0.37 -5.58 12.07 33.42 0.40 -5.18 16 28 O 0.09 1.23 11.20 17.19 0.19 1.42 16 29 C -0.03 -0.36 7.49 -35.30 -0.26 -0.63 16 30 C -0.07 -0.46 10.17 36.00 0.37 -0.09 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.45 7.26 -51.93 -0.38 0.07 16 34 H 0.07 0.75 6.57 -51.93 -0.34 0.41 16 35 H 0.08 0.67 7.30 -51.93 -0.38 0.29 16 36 H 0.41 4.97 6.87 -40.82 -0.28 4.69 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.06 1.40 7.38 -51.93 -0.38 1.01 16 41 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 42 H 0.38 4.45 9.09 45.56 0.41 4.86 16 43 H 0.07 0.81 8.04 -51.93 -0.42 0.40 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.09 1.29 5.96 -51.93 -0.31 0.98 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.40 7.39 -51.93 -0.38 0.01 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -33.89 383.94 -6.95 -40.85 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.53 Total: 6.49 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.17 Total: 3.94 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.14 Total: -56.89 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.16 Total: -17.12 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.89 -6.95 -40.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220546021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.147 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds