Wall clock time and date at job start Tue Mar 31 2020 20:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00329 * 2 1 4 4 C 1.52992 * 109.47470 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47262 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47286 * 180.02562 * 5 4 3 7 7 N 1.28389 * 119.10268 * 270.25530 * 6 5 4 8 8 C 1.31404 * 122.26565 * 180.27386 * 7 6 5 9 9 C 1.47880 * 119.89236 * 179.74587 * 8 7 6 10 10 O 1.21558 * 120.00181 * 172.99341 * 9 8 7 11 11 N 1.34783 * 120.00015 * 352.99196 * 9 8 7 12 12 C 1.46498 * 119.99964 * 4.00109 * 11 9 8 13 13 C 1.50700 * 109.46803 * 83.15078 * 12 11 9 14 14 H 1.07994 * 120.00363 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99867 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99554 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99911 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47584 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46898 * 119.99959 * 17 15 13 20 20 H 1.48504 * 109.47139 * 239.99868 * 17 15 13 21 21 C 1.46496 * 119.99949 * 184.00265 * 11 9 8 22 22 C 1.53003 * 109.47240 * 303.52588 * 21 11 9 23 23 C 1.53005 * 109.47153 * 63.52503 * 21 11 9 24 24 C 1.41582 * 120.21208 * 359.47339 * 8 7 6 25 25 C 1.36325 * 118.24053 * 0.24786 * 24 8 7 26 26 C 1.34620 * 119.09899 * 89.99885 * 6 5 4 27 27 O 1.21979 * 120.22474 * 0.02685 * 26 6 5 28 28 H 1.09002 * 109.47127 * 300.00487 * 1 2 3 29 29 H 1.09003 * 109.46626 * 60.00339 * 1 2 3 30 30 H 1.08994 * 109.46764 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46941 * 59.99355 * 3 2 1 32 32 H 1.09004 * 109.46535 * 299.99684 * 3 2 1 33 33 H 1.09007 * 109.46995 * 60.00111 * 4 3 2 34 34 H 1.08995 * 109.47169 * 299.99842 * 4 3 2 35 35 H 1.08995 * 109.47236 * 60.00083 * 5 4 3 36 36 H 1.09009 * 109.47153 * 300.00116 * 5 4 3 37 37 H 1.08994 * 109.47075 * 203.15207 * 12 11 9 38 38 H 1.08998 * 109.47238 * 323.15140 * 12 11 9 39 39 H 0.97001 * 119.99575 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47068 * 183.52666 * 21 11 9 41 41 H 1.09000 * 109.46928 * 65.63576 * 22 21 11 42 42 H 1.09005 * 109.47377 * 185.63511 * 22 21 11 43 43 H 1.08992 * 109.47166 * 305.63940 * 22 21 11 44 44 H 1.08994 * 109.46790 * 64.91372 * 23 21 11 45 45 H 1.09004 * 109.46904 * 184.90484 * 23 21 11 46 46 H 1.08996 * 109.47074 * 304.91199 * 23 21 11 47 47 H 1.08003 * 120.87939 * 180.27838 * 24 8 7 48 48 H 1.07993 * 121.03567 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4667 0.0000 7 7 6.2404 2.4129 1.1218 8 6 7.5487 2.3143 1.1943 9 6 8.2117 2.2619 2.5151 10 8 9.4053 2.0432 2.5878 11 7 7.4927 2.4567 3.6384 12 6 6.0406 2.6330 3.5572 13 6 5.3738 1.2833 3.4896 14 1 5.9717 0.3841 3.5051 15 6 4.0001 1.1963 3.4079 16 7 3.2719 2.2913 3.3895 17 14 3.1734 -0.4767 3.3248 18 1 4.2071 -1.5422 3.3632 19 1 2.2576 -0.6343 4.4831 20 1 2.3982 -0.5837 2.0627 21 6 8.1632 2.4920 4.9404 22 6 8.9476 1.1945 5.1456 23 6 9.1242 3.6817 4.9870 24 6 8.3251 2.2523 0.0120 25 6 7.6791 2.3029 -1.1874 26 6 6.2708 2.4144 -1.1763 27 8 5.6504 2.4636 -2.2254 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8574 0.6435 -0.8892 34 1 3.8567 0.6439 0.8908 35 1 3.8359 3.1238 0.8895 36 1 3.8365 3.1227 -0.8905 37 1 5.6897 3.1679 4.4396 38 1 5.7935 3.2055 2.6632 39 1 2.3056 2.2302 3.3317 40 1 7.4187 2.5952 5.7298 41 1 9.7565 1.1399 4.4170 42 1 9.3640 1.1770 6.1528 43 1 8.2812 0.3423 5.0130 44 1 8.5562 4.6101 4.9283 45 1 9.6864 3.6582 5.9205 46 1 9.8145 3.6243 4.1454 47 1 9.4007 2.1667 0.0591 48 1 8.2267 2.2587 -2.1171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261675615.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:44 Heat of formation + Delta-G solvation = -32.386208 kcal Electronic energy + Delta-G solvation = -31780.818189 eV Core-core repulsion = 27645.648605 eV Total energy + Delta-G solvation = -4135.169584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.69630 -39.39651 -37.73428 -37.26488 -35.70361 -34.89591 -33.30664 -32.30933 -31.70022 -30.18487 -27.38623 -27.01529 -26.68426 -25.72143 -24.62175 -23.38482 -22.90083 -22.00753 -21.14651 -19.43945 -17.78846 -17.06918 -16.62966 -16.36813 -16.17038 -16.01638 -15.88722 -15.28374 -15.18055 -14.60879 -14.40159 -14.34281 -13.95894 -13.88027 -13.42721 -13.08091 -12.88951 -12.86184 -12.64277 -12.23638 -12.02322 -11.91594 -11.85653 -11.75995 -11.65303 -11.43527 -11.08858 -10.97829 -10.84597 -10.76161 -10.66271 -10.43416 -10.26585 -10.10329 -9.95990 -9.71359 -9.34313 -9.21466 -8.88997 -8.44884 -8.11253 -7.75346 -6.17850 -4.17580 0.93015 1.62862 2.57565 3.26866 3.30225 3.38972 3.45126 3.71832 3.96106 4.12254 4.35990 4.46942 5.01258 5.10163 5.15535 5.18575 5.26131 5.31722 5.44257 5.46156 5.48388 5.57070 5.63435 5.64548 5.73037 5.76722 5.78893 5.97659 5.99397 6.03856 6.04589 6.14085 6.22313 6.29147 6.34323 6.39537 6.47619 6.64435 6.67462 6.76512 6.86681 7.35939 7.38947 7.59166 7.76363 7.93982 8.10194 8.22399 8.51551 8.80004 8.91304 9.43801 10.87651 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.005523 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.664236 B = 5068.917346 C = 6946.097817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.071 3.929 4 C -0.132 4.132 5 C 0.119 3.881 6 N -0.334 5.334 7 N -0.095 5.095 8 C -0.019 4.019 9 C 0.588 3.412 10 O -0.563 6.563 11 N -0.573 5.573 12 C 0.227 3.773 13 C -0.503 4.503 14 H 0.055 0.945 15 C 0.077 3.923 16 N -0.884 5.884 17 Si 0.848 3.152 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.239 1.239 21 C 0.147 3.853 22 C -0.167 4.167 23 C -0.165 4.165 24 C -0.018 4.018 25 C -0.223 4.223 26 C 0.476 3.524 27 O -0.545 6.545 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.260 0.740 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.154 0.846 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 2.310 -2.885 3.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.006 4.006 4 C -0.170 4.170 5 C -0.001 4.001 6 N -0.154 5.154 7 N 0.074 4.926 8 C -0.187 4.187 9 C 0.374 3.626 10 O -0.443 6.443 11 N -0.302 5.302 12 C 0.107 3.893 13 C -0.543 4.543 14 H 0.073 0.927 15 C -0.125 4.125 16 N -0.523 5.523 17 Si 0.675 3.325 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.163 1.163 21 C 0.043 3.957 22 C -0.224 4.224 23 C -0.223 4.223 24 C -0.042 4.042 25 C -0.252 4.252 26 C 0.276 3.724 27 O -0.425 6.425 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.142 0.858 36 H 0.112 0.888 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.171 0.829 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.847 2.201 -2.958 3.783 hybrid contribution -0.316 -0.937 -0.462 1.091 sum 0.531 1.264 -3.420 3.685 Atomic orbital electron populations 1.22677 0.81723 1.02268 0.99747 1.87938 1.19099 1.28045 1.95308 1.22296 0.93281 0.84692 1.00338 1.21796 0.93759 0.96955 1.04518 1.21867 0.73666 0.98820 1.05703 1.47191 1.10058 1.55252 1.02930 1.72709 1.09799 1.01561 1.08519 1.21837 0.88968 1.11829 0.96019 1.17174 0.85426 0.77506 0.82487 1.90644 1.14616 1.52498 1.86507 1.48311 1.10661 1.66859 1.04396 1.20100 0.72201 0.97894 0.99143 1.21402 0.91492 0.92198 1.49159 0.92712 1.24679 0.96871 0.96029 0.94899 1.69938 1.05581 1.26630 1.50184 0.87303 0.80567 0.84881 0.79782 1.20314 1.21555 1.16324 1.20931 0.94489 0.95054 0.85208 1.22208 1.01586 0.97268 1.01384 1.22176 0.99950 0.97729 1.02418 1.22161 1.02298 0.89055 0.90733 1.22451 0.92960 1.09874 0.99891 1.18195 0.90025 0.79799 0.84377 1.90898 1.69476 1.52176 1.29950 0.94097 0.94402 0.90107 0.92046 0.93695 0.91582 0.88562 0.85815 0.88751 0.94979 0.91010 0.92989 0.89583 0.90246 0.93023 0.92490 0.93028 0.92355 0.91161 0.82873 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.39 -6.77 9.23 -35.23 -0.33 -7.09 16 3 C 0.07 1.18 5.79 37.15 0.22 1.39 16 4 C -0.13 -2.43 5.91 -26.74 -0.16 -2.59 16 5 C 0.12 2.11 5.55 -4.04 -0.02 2.09 16 6 N -0.33 -6.29 3.22 -63.33 -0.20 -6.49 16 7 N -0.09 -1.87 5.64 33.41 0.19 -1.68 16 8 C -0.02 -0.36 6.72 -82.83 -0.56 -0.92 16 9 C 0.59 11.55 6.97 -12.31 -0.09 11.46 16 10 O -0.56 -11.20 12.71 5.31 0.07 -11.13 16 11 N -0.57 -11.24 2.43 -168.56 -0.41 -11.65 16 12 C 0.23 4.93 4.75 -5.19 -0.02 4.90 16 13 C -0.50 -11.98 8.09 -34.44 -0.28 -12.26 16 14 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 15 C 0.08 1.83 4.64 -17.82 -0.08 1.75 16 16 N -0.88 -20.81 13.05 55.43 0.72 -20.08 16 17 Si 0.85 19.15 27.56 -169.99 -4.68 14.47 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.24 -5.24 5.25 56.52 0.30 -4.94 16 21 C 0.15 2.51 3.27 -67.93 -0.22 2.28 16 22 C -0.17 -2.74 8.94 37.16 0.33 -2.41 16 23 C -0.16 -2.44 9.23 37.16 0.34 -2.10 16 24 C -0.02 -0.29 9.67 -39.00 -0.38 -0.67 16 25 C -0.22 -3.47 10.11 -39.12 -0.40 -3.87 16 26 C 0.48 8.81 7.47 -15.18 -0.11 8.69 16 27 O -0.54 -11.07 16.62 4.94 0.08 -10.98 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 34 H 0.10 2.04 4.68 -51.93 -0.24 1.79 16 35 H 0.12 2.30 7.90 -51.93 -0.41 1.89 16 36 H 0.09 1.53 7.36 -51.92 -0.38 1.14 16 37 H 0.03 0.74 7.81 -51.93 -0.41 0.33 16 38 H 0.07 1.62 5.18 -54.29 -0.28 1.34 16 39 H 0.26 5.94 8.31 -40.82 -0.34 5.60 16 40 H 0.09 1.45 7.73 -51.93 -0.40 1.05 16 41 H 0.08 1.40 6.01 -51.93 -0.31 1.09 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.14 6.46 -51.93 -0.34 0.80 16 47 H 0.15 2.07 7.73 -52.48 -0.41 1.66 16 48 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -27.43 384.50 -6.56 -33.99 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.48 Total: 5.57 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -0.31 Total: 9.30 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.30 Total: -39.91 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.18 Total: -29.21 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.68 Total: 14.47 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.43 -6.56 -33.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261675615.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.602 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds