Wall clock time and date at job start Tue Mar 31 2020 20:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47328 * 120.00055 * 2 1 3 5 5 O 1.21286 * 120.00328 * 119.99721 * 4 2 1 6 6 N 1.34773 * 119.99969 * 300.00235 * 4 2 1 7 7 C 1.46506 * 120.00029 * 180.27678 * 6 4 2 8 8 C 1.53006 * 109.46937 * 179.72264 * 7 6 4 9 9 N 1.46900 * 109.46674 * 180.02562 * 8 7 6 10 10 C 1.46908 * 110.99843 * 294.29833 * 9 8 7 11 11 C 1.53235 * 109.33753 * 172.74909 * 10 9 8 12 12 N 1.47085 * 108.52242 * 53.83486 * 11 10 9 13 13 C 1.36932 * 120.88250 * 128.83527 * 12 11 10 14 14 H 1.07997 * 119.99773 * 206.55978 * 13 12 11 15 15 C 1.38810 * 120.00008 * 26.56319 * 13 12 11 16 16 N 1.31613 * 120.00409 * 17.01550 * 15 13 12 17 17 Si 1.86809 * 119.99710 * 197.01597 * 15 13 12 18 18 H 1.48499 * 109.46875 * 89.99800 * 17 15 13 19 19 H 1.48502 * 109.46936 * 209.99861 * 17 15 13 20 20 H 1.48501 * 109.47098 * 329.99904 * 17 15 13 21 21 C 1.47084 * 118.23086 * 308.80977 * 12 11 10 22 22 C 1.46900 * 110.99700 * 170.00297 * 9 8 7 23 23 C 1.52997 * 109.47079 * 240.00062 * 2 1 3 24 24 F 1.39907 * 109.47325 * 299.99798 * 23 2 1 25 25 F 1.39905 * 109.47259 * 59.99583 * 23 2 1 26 26 F 1.39904 * 109.47483 * 179.97438 * 23 2 1 27 27 H 1.09002 * 109.47119 * 299.99851 * 1 2 3 28 28 H 1.09001 * 109.47280 * 60.00012 * 1 2 3 29 29 H 1.09006 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47029 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47094 * 300.00102 * 3 2 1 32 32 H 1.08994 * 109.47285 * 59.99889 * 3 2 1 33 33 H 0.97004 * 120.00032 * 359.97438 * 6 4 2 34 34 H 1.09001 * 109.46767 * 299.72142 * 7 6 4 35 35 H 1.08999 * 109.47195 * 59.72193 * 7 6 4 36 36 H 1.09003 * 109.46816 * 299.99780 * 8 7 6 37 37 H 1.08999 * 109.47235 * 59.99954 * 8 7 6 38 38 H 1.09002 * 109.48802 * 292.70837 * 10 9 8 39 39 H 1.08992 * 109.48887 * 52.79076 * 10 9 8 40 40 H 1.08991 * 109.63280 * 294.11988 * 11 10 9 41 41 H 1.09000 * 109.62738 * 173.53448 * 11 10 9 42 42 H 0.96995 * 120.00441 * 179.97438 * 16 15 13 43 43 H 1.08994 * 109.62934 * 291.47397 * 21 12 11 44 44 H 1.09001 * 109.78318 * 170.99050 * 21 12 11 45 45 H 1.09001 * 109.49078 * 307.20462 * 22 9 8 46 46 H 1.08991 * 109.49700 * 67.28898 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2500 2.4545 7 6 2.2002 -0.9371 3.6507 8 6 1.6947 -0.2125 4.8999 9 7 2.1899 -0.9012 6.0993 10 6 1.6124 -2.2474 6.2096 11 6 2.2867 -2.9958 7.3643 12 7 2.1820 -2.1728 8.5789 13 6 1.6952 -2.6998 9.7452 14 1 1.2246 -2.0561 10.4736 15 6 1.8066 -4.0614 9.9913 16 7 2.6528 -4.7892 9.2938 17 14 0.7553 -4.8608 11.3125 18 1 -0.5221 -5.3255 10.7147 19 1 1.4824 -6.0198 11.8897 20 1 0.4700 -3.8723 12.3834 21 6 2.6147 -0.7689 8.5074 22 6 1.9275 -0.1081 7.3077 23 6 2.0400 -0.7212 -1.2492 24 9 1.5737 -2.0403 -1.2493 25 9 1.5736 -0.0618 -2.3915 26 9 3.4390 -0.7208 -1.2496 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.1493 0.5389 2.5435 34 1 1.8373 -1.9649 3.6549 35 1 3.2901 -0.9366 3.6464 36 1 2.0576 0.8153 4.8956 37 1 0.6047 -0.2130 4.9042 38 1 0.5424 -2.1695 6.4022 39 1 1.7763 -2.7908 5.2791 40 1 3.3367 -3.1661 7.1268 41 1 1.7852 -3.9502 7.5246 42 1 2.7309 -5.7406 9.4661 43 1 3.6963 -0.7251 8.3798 44 1 2.3328 -0.2489 9.4230 45 1 2.3199 0.8999 7.1736 46 1 0.8531 -0.0600 7.4850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479941121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:33 Heat of formation + Delta-G solvation = -160.153144 kcal Electronic energy + Delta-G solvation = -30351.506210 eV Core-core repulsion = 25668.939495 eV Total energy + Delta-G solvation = -4682.566714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.35330 -47.85676 -47.73424 -40.41477 -38.30869 -35.85238 -35.59111 -33.99365 -31.46974 -29.98127 -28.98373 -28.10921 -26.56863 -26.06932 -23.80014 -23.00980 -22.52302 -21.44585 -20.40980 -19.15988 -18.94991 -18.56567 -17.97497 -16.93955 -16.66358 -16.00968 -15.85598 -15.08490 -14.92724 -14.84096 -14.49888 -14.40146 -14.22625 -14.17799 -13.96201 -13.93874 -13.86715 -13.75790 -13.54789 -13.46580 -13.25448 -12.97457 -12.88059 -12.85918 -12.55922 -11.99804 -11.80442 -11.63780 -11.47560 -11.37965 -11.08125 -10.77363 -10.48243 -10.35887 -10.18712 -10.08159 -9.78037 -9.66163 -9.28390 -8.52576 -7.94843 -6.69197 -5.79136 -3.20865 2.17905 2.21001 2.66541 3.33887 3.36918 3.43684 3.45214 3.64033 3.71950 4.14697 4.26869 4.39358 4.39512 4.49414 4.84896 4.85930 4.95596 5.00202 5.02947 5.08363 5.37231 5.38686 5.40622 5.42546 5.46394 5.75724 5.85264 5.86665 5.95247 6.04789 6.12393 6.19212 6.28450 6.50058 6.64864 6.89188 7.05551 7.20629 7.48137 7.59780 7.66830 7.78475 7.79784 8.42006 9.19760 9.83033 10.41332 11.29671 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.024779 B = 0.002150 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.709363 B =13017.480913 C =13485.984515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C -0.148 4.148 4 C 0.525 3.475 5 O -0.514 6.514 6 N -0.717 5.717 7 C 0.120 3.880 8 C 0.045 3.955 9 N -0.529 5.529 10 C 0.031 3.969 11 C 0.178 3.822 12 N -0.596 5.596 13 C -0.254 4.254 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.902 5.902 17 Si 0.903 3.097 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.148 3.852 22 C 0.047 3.953 23 C 0.475 3.525 24 F -0.171 7.171 25 F -0.181 7.181 26 F -0.171 7.171 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.399 0.601 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.026 0.974 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.089 0.911 42 H 0.254 0.746 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 15.255 -21.014 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 C -0.205 4.205 4 C 0.308 3.692 5 O -0.389 6.389 6 N -0.369 5.369 7 C -0.003 4.003 8 C -0.084 4.084 9 N -0.254 5.254 10 C -0.098 4.098 11 C 0.052 3.948 12 N -0.319 5.319 13 C -0.383 4.383 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.733 3.267 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.205 1.205 21 C 0.021 3.979 22 C -0.083 4.083 23 C 0.420 3.580 24 F -0.152 7.152 25 F -0.163 7.163 26 F -0.152 7.152 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.234 0.766 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -4.134 14.259 -21.081 25.784 hybrid contribution -1.594 -0.114 0.536 1.686 sum -5.728 14.145 -20.546 25.594 Atomic orbital electron populations 1.21961 0.88937 1.04804 1.04887 1.22115 1.00858 0.99040 0.91698 1.21955 1.03114 0.90584 1.04889 1.19612 0.80924 0.84606 0.84074 1.90852 1.36605 1.25181 1.86242 1.45768 1.53495 1.32214 1.05414 1.21482 1.00506 0.96520 0.81790 1.22190 0.97361 0.98096 0.90744 1.61880 1.58908 1.03403 1.01229 1.23015 0.96834 0.88980 1.00996 1.20867 0.97726 0.93964 0.82274 1.44129 1.73748 1.06260 1.07755 1.19192 1.30601 0.91825 0.96695 0.91611 1.25035 0.98149 0.97857 0.98677 1.70021 1.34997 1.06449 1.43194 0.86284 0.80049 0.79016 0.81376 1.21505 1.21711 1.20478 1.20971 0.96121 0.86839 0.93929 1.22628 0.98571 0.95851 0.91229 1.19733 0.76067 0.77749 0.84424 1.93217 1.88280 1.37090 1.96631 1.93167 1.88589 1.80869 1.53634 1.93213 1.29087 1.96304 1.96635 0.89730 0.89813 0.90416 0.90411 0.89835 0.89714 0.76620 0.90680 0.90035 0.90806 0.94919 0.95556 0.91767 0.95421 0.89285 0.93545 0.95594 0.92535 0.91959 0.95323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.13 37.16 0.30 -0.50 16 2 C -0.13 -1.05 0.44 -155.66 -0.07 -1.12 16 3 C -0.15 -0.77 8.13 37.16 0.30 -0.46 16 4 C 0.52 5.84 6.25 -10.99 -0.07 5.77 16 5 O -0.51 -8.18 14.83 5.55 0.08 -8.10 16 6 N -0.72 -6.55 5.34 -60.29 -0.32 -6.87 16 7 C 0.12 1.45 5.60 -4.04 -0.02 1.43 16 8 C 0.05 0.54 5.08 -3.82 -0.02 0.52 16 9 N -0.53 -8.78 4.63 -234.32 -1.08 -9.86 16 10 C 0.03 0.58 5.46 -3.70 -0.02 0.56 16 11 C 0.18 4.26 5.42 -3.60 -0.02 4.24 16 12 N -0.60 -14.93 3.04 -172.02 -0.52 -15.46 16 13 C -0.25 -6.93 9.63 -15.06 -0.15 -7.08 16 14 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 15 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 16 N -0.90 -26.26 11.15 55.49 0.62 -25.64 16 17 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 C 0.15 3.07 6.69 -3.60 -0.02 3.05 16 22 C 0.05 0.78 5.62 -3.70 -0.02 0.76 16 23 C 0.48 4.97 1.95 37.16 0.07 5.04 16 24 F -0.17 -2.14 15.88 2.25 0.04 -2.10 16 25 F -0.18 -1.64 16.28 2.25 0.04 -1.61 16 26 F -0.17 -2.12 15.88 2.25 0.04 -2.08 16 27 H 0.08 0.29 7.56 -51.93 -0.39 -0.11 16 28 H 0.08 0.34 7.80 -51.93 -0.41 -0.06 16 29 H 0.08 0.51 7.80 -51.93 -0.41 0.11 16 30 H 0.08 0.48 7.80 -51.93 -0.41 0.08 16 31 H 0.08 0.33 7.80 -51.93 -0.41 -0.08 16 32 H 0.08 0.26 7.56 -51.93 -0.39 -0.13 16 33 H 0.40 2.28 7.31 -40.82 -0.30 1.98 16 34 H 0.07 1.05 6.40 -51.93 -0.33 0.72 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 37 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 1.12 6.16 -51.93 -0.32 0.80 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 2.38 6.12 -51.93 -0.32 2.06 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 45 H 0.06 0.87 7.99 -51.93 -0.41 0.46 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -32.93 372.54 -7.35 -40.29 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.00 Total: -2.96 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 0.18 Total: 12.18 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -1.31 Total: -57.82 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.93 -7.35 -40.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479941121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.864 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds