Wall clock time and date at job start Tue Mar 31 2020 21:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46923 * 2 1 4 4 N 1.46502 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00038 * 270.00036 * 4 3 2 6 6 H 1.07998 * 119.99836 * 38.13386 * 5 4 3 7 7 C 1.38808 * 120.00159 * 218.12935 * 5 4 3 8 8 N 1.31623 * 119.99575 * 21.28155 * 7 5 4 9 9 Si 1.86798 * 120.00528 * 201.28412 * 7 5 4 10 10 H 1.48494 * 109.47322 * 89.99677 * 9 7 5 11 11 H 1.48504 * 109.47158 * 210.00363 * 9 7 5 12 12 H 1.48506 * 109.46746 * 330.00034 * 9 7 5 13 13 C 1.46502 * 119.99987 * 89.99931 * 4 3 2 14 14 C 1.53003 * 109.46936 * 264.50417 * 13 4 3 15 15 N 1.46507 * 109.46645 * 179.97438 * 14 13 4 16 16 C 1.34773 * 119.99513 * 179.97438 * 15 14 13 17 17 O 1.21611 * 120.00673 * 0.02562 * 16 15 14 18 18 C 1.47422 * 120.00009 * 180.02562 * 16 15 14 19 19 N 1.36075 * 126.44677 * 359.68837 * 18 16 15 20 20 C 1.29930 * 108.47812 * 179.82561 * 19 18 16 21 21 O 1.34059 * 109.24048 * 0.44299 * 20 19 18 22 22 C 1.34247 * 108.22794 * 359.72515 * 21 20 19 23 23 C 1.50700 * 126.52753 * 180.02562 * 22 21 20 24 24 H 1.08999 * 110.27902 * 165.60491 * 23 22 21 25 25 C 1.54952 * 110.30591 * 287.80506 * 23 22 21 26 26 C 1.55300 * 100.94077 * 155.35718 * 25 23 22 27 27 C 1.54380 * 102.25683 * 325.86756 * 26 25 23 28 28 O 1.43243 * 107.58688 * 21.35381 * 27 26 25 29 29 H 1.08998 * 109.46899 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47526 * 299.99581 * 1 2 3 31 31 H 1.09003 * 109.47480 * 60.00428 * 1 2 3 32 32 H 1.09000 * 109.47669 * 239.99891 * 2 1 3 33 33 H 1.09003 * 109.47480 * 119.99572 * 2 1 3 34 34 H 1.08999 * 109.47022 * 60.00289 * 3 2 1 35 35 H 1.09001 * 109.47014 * 299.99621 * 3 2 1 36 36 H 0.97006 * 119.99486 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47140 * 144.50228 * 13 4 3 38 38 H 1.09004 * 109.46944 * 24.49910 * 13 4 3 39 39 H 1.08993 * 109.47261 * 299.99205 * 14 13 4 40 40 H 1.08999 * 109.47360 * 59.99946 * 14 13 4 41 41 H 0.96995 * 120.00350 * 359.97438 * 15 14 13 42 42 H 1.08001 * 125.38152 * 180.16698 * 20 19 18 43 43 H 1.08993 * 111.12431 * 273.27502 * 25 23 22 44 44 H 1.09000 * 111.12278 * 37.43666 * 25 23 22 45 45 H 1.08997 * 110.85092 * 207.67517 * 26 25 23 46 46 H 1.08998 * 111.02277 * 84.13516 * 26 25 23 47 47 H 1.09001 * 109.83262 * 261.84680 * 27 26 25 48 48 H 1.08994 * 109.83752 * 140.87159 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.4428 1.1868 6 1 3.8216 0.8654 2.0222 7 6 5.3550 2.1851 1.3155 8 7 5.5886 3.1903 0.4984 9 14 6.5923 1.7576 2.6480 10 1 7.5712 0.7749 2.1177 11 1 7.3068 2.9881 3.0732 12 1 5.8823 1.1700 3.8125 13 6 4.2380 1.4425 -1.2678 14 6 4.6128 0.0065 -1.6400 15 7 5.3453 0.0064 -2.9088 16 6 5.7797 -1.1555 -3.4359 17 8 5.5632 -2.2038 -2.8586 18 6 6.5173 -1.1557 -4.7123 19 7 6.8255 -0.0669 -5.4681 20 6 7.4824 -0.4655 -6.5158 21 8 7.6089 -1.7995 -6.4769 22 6 7.0130 -2.2454 -5.3596 23 6 6.9127 -3.6795 -4.9077 24 1 6.6084 -3.7257 -3.8621 25 6 5.9082 -4.4546 -5.7972 26 6 6.4232 -5.9095 -5.6245 27 6 7.9480 -5.7045 -5.4977 28 8 8.1702 -4.3491 -5.0910 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 6.4035 3.7088 0.5881 37 1 5.1441 2.0392 -1.1639 38 1 3.6100 1.8685 -2.0504 39 1 5.2407 -0.4195 -0.8576 40 1 3.7067 -0.5903 -1.7439 41 1 5.5177 0.8424 -3.3694 42 1 7.8622 0.1761 -7.2972 43 1 4.8901 -4.3511 -5.4219 44 1 5.9760 -4.1346 -6.8369 45 1 6.1843 -6.5122 -6.5007 46 1 6.0164 -6.3636 -4.7209 47 1 8.4267 -5.8848 -6.4603 48 1 8.3519 -6.3861 -4.7492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663676340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:08 Heat of formation + Delta-G solvation = -45.517894 kcal Electronic energy + Delta-G solvation = -29612.799738 eV Core-core repulsion = 25477.060721 eV Total energy + Delta-G solvation = -4135.739017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.56531 -39.62808 -39.12838 -36.47795 -34.92526 -34.23947 -32.86602 -32.58346 -31.81094 -30.79124 -28.84365 -27.83545 -25.55561 -24.52026 -23.64931 -23.00602 -22.02156 -21.45479 -20.80981 -20.46983 -20.01963 -18.21853 -17.07082 -16.88355 -16.80686 -16.47817 -15.85885 -15.53999 -15.14081 -15.11499 -14.64355 -14.31122 -14.19414 -13.99630 -13.84297 -13.47983 -13.35564 -12.95042 -12.78711 -12.60638 -12.19253 -12.08796 -11.72510 -11.58830 -11.52754 -11.40407 -11.25519 -11.16338 -10.92849 -10.90614 -10.74235 -10.44100 -10.33741 -10.15421 -10.01720 -9.86916 -9.80928 -9.61960 -9.10288 -8.54803 -8.44361 -6.60741 -5.80054 -3.42193 0.94514 2.00523 2.38637 3.33117 3.37414 3.44946 3.45583 3.47648 3.57936 3.95720 4.15575 4.23006 4.47868 4.54838 4.78146 4.89813 4.91503 5.00120 5.29646 5.31771 5.36781 5.39427 5.46854 5.49474 5.54595 5.65187 5.66204 5.75906 5.84950 5.96963 6.02875 6.13361 6.22901 6.29706 6.42407 6.53493 6.62152 6.62298 6.67370 6.84525 6.97738 7.02565 7.17399 7.31072 7.58500 7.82448 7.92498 8.46394 8.50778 9.15883 9.77737 10.35725 11.18146 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011208 B = 0.002929 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.602347 B = 9556.266176 C =10244.498428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.885 5.885 9 Si 0.896 3.104 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.135 3.865 14 C 0.098 3.902 15 N -0.696 5.696 16 C 0.593 3.407 17 O -0.543 6.543 18 C -0.052 4.052 19 N -0.460 5.460 20 C 0.176 3.824 21 O -0.191 6.191 22 C 0.034 3.966 23 C 0.155 3.845 24 H 0.139 0.861 25 C -0.147 4.147 26 C -0.154 4.154 27 C 0.050 3.950 28 O -0.374 6.374 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.255 0.745 37 H 0.099 0.901 38 H 0.031 0.969 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.407 0.593 42 H 0.256 0.744 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 -12.716 -16.871 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.393 4.393 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.527 5.527 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.007 3.993 14 C -0.027 4.027 15 N -0.345 5.345 16 C 0.377 3.623 17 O -0.422 6.422 18 C -0.173 4.173 19 N -0.189 5.189 20 C -0.053 4.053 21 O -0.076 6.076 22 C -0.023 4.023 23 C 0.098 3.902 24 H 0.156 0.844 25 C -0.184 4.184 26 C -0.191 4.191 27 C -0.026 4.026 28 O -0.294 6.294 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.241 0.759 42 H 0.272 0.728 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.813 -12.558 -16.245 20.549 hybrid contribution 0.955 -0.399 0.000 1.035 sum 1.768 -12.957 -16.245 20.854 Atomic orbital electron populations 1.21720 0.97341 1.00365 1.01027 1.22206 0.93827 1.01024 1.01491 1.20953 0.85044 0.92856 0.99021 1.43598 0.99403 1.85068 1.01791 1.19018 1.06181 1.22769 0.91307 0.92052 1.25199 1.00814 0.94602 0.97950 1.69975 1.25912 1.17035 1.39752 0.86402 0.81704 0.77554 0.81816 1.21193 1.21699 1.20135 1.21078 0.99687 0.91627 0.86866 1.22523 0.94909 1.02732 0.82533 1.45956 1.55328 1.08450 1.24774 1.16740 0.78719 0.84771 0.82089 1.90724 1.58487 1.31386 1.61648 1.21711 1.07825 0.88406 0.99342 1.70814 1.13827 1.30114 1.04167 1.28086 0.98747 0.79244 0.99191 1.84384 1.59867 1.25112 1.38254 1.23563 0.96553 0.96768 0.85433 1.21982 0.84549 0.82183 1.01529 0.84379 1.23313 1.00296 0.94281 1.00534 1.23138 0.95316 0.96910 1.03771 1.23181 0.95772 0.83423 1.00265 1.88496 1.27676 1.23992 1.89201 0.93845 0.93188 0.93462 0.93010 0.92369 0.93251 0.94962 0.93483 0.88394 0.95086 0.91318 0.92671 0.75865 0.72844 0.88618 0.90100 0.89535 0.89714 0.91092 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.15 0.37 -1.78 16 2 C -0.15 -2.63 6.26 -26.73 -0.17 -2.80 16 3 C 0.15 3.06 5.71 -4.04 -0.02 3.04 16 4 N -0.58 -14.02 2.43 -173.23 -0.42 -14.44 16 5 C -0.26 -7.06 9.42 -15.06 -0.14 -7.20 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.24 16 7 C 0.02 0.41 5.00 -17.43 -0.09 0.32 16 8 N -0.88 -24.93 11.43 55.49 0.63 -24.30 16 9 Si 0.90 21.65 29.60 -169.99 -5.03 16.62 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 C 0.13 3.04 5.50 -4.04 -0.02 3.02 16 14 C 0.10 2.04 5.97 -4.04 -0.02 2.01 16 15 N -0.70 -12.84 5.55 -61.38 -0.34 -13.18 16 16 C 0.59 10.86 7.81 -12.52 -0.10 10.76 16 17 O -0.54 -10.88 14.56 5.27 0.08 -10.80 16 18 C -0.05 -0.83 6.99 -83.02 -0.58 -1.41 16 19 N -0.46 -6.49 11.06 -11.48 -0.13 -6.61 16 20 C 0.18 1.82 13.19 51.96 0.69 2.50 16 21 O -0.19 -2.33 10.73 6.51 0.07 -2.26 16 22 C 0.03 0.48 6.37 -35.08 -0.22 0.26 16 23 C 0.15 2.02 3.70 -26.85 -0.10 1.92 16 24 H 0.14 2.06 5.83 -51.93 -0.30 1.75 16 25 C -0.15 -1.41 6.56 -24.48 -0.16 -1.57 16 26 C -0.15 -1.15 7.02 -24.79 -0.17 -1.33 16 27 C 0.05 0.44 7.79 37.88 0.30 0.74 16 28 O -0.37 -4.91 11.03 -35.23 -0.39 -5.30 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.95 6.66 -51.93 -0.35 0.61 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 35 H 0.03 0.63 7.86 -51.93 -0.41 0.23 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.10 2.51 5.53 -51.93 -0.29 2.22 16 38 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 39 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.06 1.14 6.66 -51.93 -0.35 0.80 16 41 H 0.41 6.99 8.20 -40.82 -0.33 6.65 16 42 H 0.26 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -32.17 395.28 -7.49 -39.66 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.47 Total: 6.17 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -0.45 Total: 8.49 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.25 Total: -58.53 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.24 Total: -18.36 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.17 -7.49 -39.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663676340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.860 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds