Wall clock time and date at job start Tue Mar 31 2020 21:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47028 * 2 1 4 4 N 1.46497 * 109.47346 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00180 * 84.49293 * 4 3 2 6 6 H 1.07997 * 120.00388 * 218.13174 * 5 4 3 7 7 C 1.38808 * 119.99551 * 38.13494 * 5 4 3 8 8 N 1.31616 * 120.00737 * 21.28120 * 7 5 4 9 9 Si 1.86810 * 119.99854 * 201.28298 * 7 5 4 10 10 H 1.48492 * 109.47069 * 89.99694 * 9 7 5 11 11 H 1.48498 * 109.46939 * 209.99933 * 9 7 5 12 12 H 1.48501 * 109.46821 * 329.99928 * 9 7 5 13 13 C 1.46502 * 120.00166 * 264.50226 * 4 3 2 14 14 C 1.53003 * 109.47365 * 89.99417 * 13 4 3 15 15 N 1.46499 * 109.46974 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99841 * 180.02562 * 15 14 13 17 17 O 1.21612 * 119.99959 * 359.97438 * 16 15 14 18 18 C 1.47423 * 119.99909 * 179.97438 * 16 15 14 19 19 N 1.36066 * 126.44868 * 359.69147 * 18 16 15 20 20 C 1.29940 * 108.47516 * 179.85700 * 19 18 16 21 21 O 1.34045 * 109.24339 * 0.40343 * 20 19 18 22 22 C 1.34262 * 108.22902 * 359.74970 * 21 20 19 23 23 C 1.50699 * 126.52477 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.81916 * 195.73763 * 23 22 21 25 25 C 1.54374 * 109.83229 * 74.85120 * 23 22 21 26 26 C 1.55450 * 102.18845 * 219.18003 * 25 23 22 27 27 C 1.54950 * 100.98621 * 34.03916 * 26 25 23 28 28 O 1.43234 * 109.82944 * 316.62123 * 23 22 21 29 29 H 1.08999 * 109.46887 * 60.00762 * 1 2 3 30 30 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47182 * 300.00039 * 1 2 3 32 32 H 1.08996 * 109.47261 * 239.99191 * 2 1 3 33 33 H 1.08999 * 109.46887 * 119.99238 * 2 1 3 34 34 H 1.08996 * 109.47760 * 59.99497 * 3 2 1 35 35 H 1.08997 * 109.46987 * 299.99801 * 3 2 1 36 36 H 0.96999 * 120.00989 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47309 * 210.00005 * 13 4 3 38 38 H 1.09002 * 109.46862 * 329.99758 * 13 4 3 39 39 H 1.09001 * 109.46729 * 300.00250 * 14 13 4 40 40 H 1.08992 * 109.46831 * 60.00498 * 14 13 4 41 41 H 0.97002 * 120.00117 * 359.97438 * 15 14 13 42 42 H 1.08003 * 125.37247 * 180.12160 * 20 19 18 43 43 H 1.09004 * 110.85274 * 337.32118 * 25 23 22 44 44 H 1.09008 * 110.84825 * 100.93569 * 25 23 22 45 45 H 1.08998 * 111.05682 * 276.12591 * 26 25 23 46 46 H 1.08993 * 111.18538 * 152.00969 * 26 25 23 47 47 H 1.09003 * 110.30861 * 204.68806 * 27 26 25 48 48 H 1.08999 * 110.30980 * 82.52269 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1902 1.3286 -1.1795 6 1 5.0974 0.7442 -1.2230 7 6 3.7188 1.9643 -2.3199 8 7 2.8945 2.9847 -2.2115 9 14 4.2541 1.3715 -4.0086 10 1 3.3054 0.3374 -4.4939 11 1 4.2652 2.5162 -4.9544 12 1 5.6175 0.7896 -3.9196 13 6 4.2370 1.5643 1.2638 14 6 4.4917 0.1709 1.8421 15 7 5.2232 0.2928 3.1055 16 6 5.5602 -0.8129 3.7984 17 8 5.2566 -1.9119 3.3751 18 6 6.2967 -0.6903 5.0696 19 7 6.7054 0.4661 5.6587 20 6 7.3185 0.1701 6.7655 21 8 7.3335 -1.1614 6.9198 22 6 6.7009 -1.7128 5.8717 23 6 6.4810 -3.1838 5.6293 24 1 6.1960 -3.3486 4.5902 25 6 5.3720 -3.7088 6.5661 26 6 5.9189 -5.1064 6.9711 27 6 7.4430 -4.8292 7.0032 28 8 7.6798 -3.9096 5.9254 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 2.5648 3.4287 -3.0084 37 1 5.1894 2.0633 1.0852 38 1 3.6475 2.1487 1.9704 39 1 3.5392 -0.3280 2.0207 40 1 5.0811 -0.4134 1.1356 41 1 5.4656 1.1693 3.4430 42 1 7.7520 0.8839 7.4503 43 1 5.2657 -3.0660 7.4400 44 1 4.4254 -3.8006 6.0334 45 1 5.6718 -5.8564 6.2197 46 1 5.5527 -5.4031 7.9539 47 1 7.9991 -5.7527 6.8418 48 1 7.7255 -4.3780 7.9544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663676342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:11 Heat of formation + Delta-G solvation = -45.624211 kcal Electronic energy + Delta-G solvation = -29383.288913 eV Core-core repulsion = 25247.545287 eV Total energy + Delta-G solvation = -4135.743627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.65501 -39.71095 -39.26864 -36.47639 -35.01488 -34.41168 -32.65858 -32.36696 -31.84380 -31.27915 -28.80438 -27.75502 -25.53233 -24.62381 -23.67325 -23.09926 -22.16596 -21.44620 -20.82248 -20.54927 -19.97663 -18.25663 -17.12804 -16.96808 -16.81648 -16.60820 -16.08290 -15.74566 -15.25604 -15.01771 -14.76011 -14.27365 -14.08114 -14.00690 -13.79578 -13.51790 -13.43713 -13.01206 -12.82881 -12.57790 -12.23985 -12.16797 -11.69617 -11.64839 -11.52256 -11.33277 -11.29087 -11.18658 -11.01906 -10.85651 -10.76696 -10.56392 -10.26059 -10.22828 -10.00384 -9.91563 -9.76961 -9.46264 -9.18908 -8.66542 -8.49289 -6.60106 -5.78181 -3.40495 0.87811 1.90541 2.31449 3.24073 3.31545 3.37780 3.44978 3.47336 3.52786 3.85786 4.06980 4.14320 4.46720 4.48745 4.70940 4.80220 4.82319 4.97570 5.25909 5.28291 5.29804 5.32748 5.38742 5.47971 5.53613 5.58790 5.78286 5.81602 5.85367 5.91754 5.93793 6.03818 6.25429 6.31318 6.53582 6.54218 6.62933 6.66618 6.70886 6.86387 6.95976 7.00396 7.21987 7.30951 7.74694 7.76594 7.84617 8.32870 8.51999 9.18366 9.79001 10.36738 11.20309 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015379 B = 0.002419 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.248209 B =11571.936599 C =11897.623821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.144 3.856 4 N -0.578 5.578 5 C -0.264 4.264 6 H 0.061 0.939 7 C 0.016 3.984 8 N -0.885 5.885 9 Si 0.897 3.103 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.277 1.277 13 C 0.139 3.861 14 C 0.094 3.906 15 N -0.701 5.701 16 C 0.595 3.405 17 O -0.540 6.540 18 C -0.058 4.058 19 N -0.461 5.461 20 C 0.174 3.826 21 O -0.192 6.192 22 C 0.026 3.974 23 C 0.155 3.845 24 H 0.147 0.853 25 C -0.146 4.146 26 C -0.154 4.154 27 C 0.046 3.954 28 O -0.368 6.368 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.023 0.977 35 H 0.094 0.906 36 H 0.255 0.745 37 H 0.054 0.946 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.406 0.594 42 H 0.255 0.745 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.242 -10.502 21.952 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C 0.018 3.982 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.078 0.922 7 C -0.185 4.185 8 N -0.527 5.527 9 Si 0.727 3.273 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.011 3.989 14 C -0.031 4.031 15 N -0.350 5.350 16 C 0.379 3.621 17 O -0.419 6.419 18 C -0.178 4.178 19 N -0.190 5.190 20 C -0.054 4.054 21 O -0.078 6.078 22 C -0.031 4.031 23 C 0.097 3.903 24 H 0.164 0.836 25 C -0.184 4.184 26 C -0.192 4.192 27 C -0.030 4.030 28 O -0.286 6.286 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.241 0.759 42 H 0.271 0.729 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.046 -10.479 21.136 24.125 hybrid contribution 0.384 -0.272 -0.174 0.501 sum 5.430 -10.751 20.962 24.176 Atomic orbital electron populations 1.21702 0.97656 0.99957 1.00971 1.22131 0.93571 1.01498 1.00860 1.21044 0.83214 0.92618 1.01352 1.43672 1.00954 1.84383 1.00792 1.19012 1.08928 1.25098 0.86293 0.92156 1.25180 0.99516 0.94853 0.98921 1.69987 1.35380 1.19096 1.28235 0.86384 0.78733 0.78029 0.84203 1.21198 1.21742 1.20170 1.20986 0.97133 0.91514 0.89303 1.22565 0.95549 1.02543 0.82454 1.45915 1.56472 1.08663 1.23956 1.16722 0.78741 0.85029 0.81586 1.90741 1.55724 1.26061 1.69345 1.21667 1.08076 0.88434 0.99637 1.70785 1.12842 1.28276 1.07142 1.28074 0.99858 0.80670 0.96802 1.84383 1.59232 1.22804 1.41342 1.24185 0.95665 0.97031 0.86231 1.21837 0.85258 0.80237 1.02996 0.83585 1.23214 0.99175 0.96479 0.99492 1.23330 0.95357 0.97224 1.03265 1.23487 0.95724 0.93253 0.90567 1.88551 1.32794 1.54058 1.53230 0.93102 0.94159 0.93741 0.92326 0.93936 0.95877 0.88877 0.93522 0.92738 0.94251 0.91774 0.91352 0.75912 0.72899 0.90290 0.88445 0.89611 0.89399 0.89076 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 37.16 0.37 -2.12 16 2 C -0.14 -2.88 6.23 -26.73 -0.17 -3.05 16 3 C 0.14 3.32 5.38 -4.05 -0.02 3.30 16 4 N -0.58 -14.06 2.43 -173.24 -0.42 -14.49 16 5 C -0.26 -7.09 9.42 -15.06 -0.14 -7.24 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.02 0.44 5.00 -17.43 -0.09 0.35 16 8 N -0.89 -25.13 11.43 55.49 0.63 -24.49 16 9 Si 0.90 21.53 29.60 -169.99 -5.03 16.50 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.14 2.83 5.82 -4.04 -0.02 2.81 16 14 C 0.09 1.77 6.00 -4.04 -0.02 1.74 16 15 N -0.70 -11.44 5.55 -61.38 -0.34 -11.78 16 16 C 0.59 9.93 7.81 -12.52 -0.10 9.83 16 17 O -0.54 -10.06 14.57 5.27 0.08 -9.99 16 18 C -0.06 -0.83 6.99 -83.02 -0.58 -1.41 16 19 N -0.46 -5.85 11.06 -11.48 -0.13 -5.98 16 20 C 0.17 1.60 13.19 51.96 0.69 2.28 16 21 O -0.19 -2.11 10.73 6.45 0.07 -2.04 16 22 C 0.03 0.34 6.20 -35.08 -0.22 0.12 16 23 C 0.15 1.85 3.77 -27.16 -0.10 1.74 16 24 H 0.15 2.02 5.84 -51.93 -0.30 1.71 16 25 C -0.15 -1.29 6.55 -24.71 -0.16 -1.45 16 26 C -0.15 -1.03 7.16 -24.40 -0.17 -1.20 16 27 C 0.05 0.36 7.78 38.19 0.30 0.66 16 28 O -0.37 -4.41 11.00 -35.29 -0.39 -4.80 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.04 0.84 6.65 -51.93 -0.35 0.50 16 34 H 0.02 0.50 7.83 -51.93 -0.41 0.09 16 35 H 0.09 2.45 5.53 -51.93 -0.29 2.16 16 36 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.05 1.13 8.04 -51.93 -0.42 0.71 16 38 H 0.04 0.75 7.86 -51.93 -0.41 0.35 16 39 H 0.06 1.26 6.65 -51.93 -0.35 0.91 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.41 5.97 8.20 -40.82 -0.33 5.64 16 42 H 0.26 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.08 0.66 7.84 -51.93 -0.41 0.25 16 44 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 395.06 15.07 5.95 5.95 Total: -1.00 -32.33 395.06 -7.48 -39.81 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.46 Total: 4.94 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.45 Total: 6.36 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.25 Total: -56.74 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.24 Total: -16.83 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.33 -7.48 -39.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663676342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.814 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds