Wall clock time and date at job start Tue Mar 31 2020 20:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46913 * 2 1 4 4 H 1.08996 * 109.87405 * 55.80251 * 3 2 1 5 5 C 1.54327 * 109.88076 * 294.78752 * 3 2 1 6 6 H 1.08993 * 110.71792 * 336.92973 * 5 3 2 7 7 N 1.46491 * 110.72135 * 100.03070 * 5 3 2 8 8 C 1.34776 * 120.00027 * 202.55656 * 7 5 3 9 9 O 1.21281 * 120.00208 * 359.97438 * 8 7 5 10 10 C 1.50709 * 120.00178 * 180.27277 * 8 7 5 11 11 C 1.52992 * 109.47023 * 179.72403 * 10 8 7 12 12 C 1.50709 * 109.47023 * 180.02562 * 11 10 8 13 13 C 1.35268 * 126.70432 * 89.71397 * 12 11 10 14 14 C 1.41933 * 103.95616 * 179.88008 * 13 12 11 15 15 O 1.35711 * 126.88077 * 180.11457 * 14 13 12 16 16 C 1.42897 * 116.99950 * 180.30081 * 15 14 13 17 17 N 1.30619 * 106.24594 * 0.38788 * 14 13 12 18 18 O 1.20921 * 111.49464 * 359.75029 * 17 14 13 19 19 C 1.55165 * 103.10070 * 218.48212 * 5 3 2 20 20 C 1.55119 * 101.48659 * 35.27922 * 19 5 3 21 21 N 1.47022 * 109.88192 * 176.98267 * 3 2 1 22 22 C 1.36938 * 125.64429 * 298.39015 * 21 3 2 23 23 H 1.08002 * 120.00263 * 345.38102 * 22 21 3 24 24 C 1.38811 * 120.00317 * 165.38223 * 22 21 3 25 25 N 1.31624 * 119.99799 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00649 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47333 * 89.99573 * 26 24 22 28 28 H 1.48494 * 109.47669 * 210.00148 * 26 24 22 29 29 H 1.48507 * 109.46914 * 330.00008 * 26 24 22 30 30 H 1.09000 * 109.47519 * 305.57574 * 1 2 3 31 31 H 1.09005 * 109.46657 * 65.57421 * 1 2 3 32 32 H 1.08997 * 109.47199 * 185.56815 * 1 2 3 33 33 H 1.08993 * 109.47054 * 239.99886 * 2 1 3 34 34 H 1.09002 * 109.46700 * 119.99272 * 2 1 3 35 35 H 0.97004 * 120.00495 * 22.55822 * 7 5 3 36 36 H 1.08996 * 109.46838 * 299.72718 * 10 8 7 37 37 H 1.09007 * 109.46867 * 59.72534 * 10 8 7 38 38 H 1.08996 * 109.47570 * 299.99866 * 11 10 8 39 39 H 1.08999 * 109.47004 * 60.00597 * 11 10 8 40 40 H 1.07999 * 128.02315 * 359.96533 * 13 12 11 41 41 H 1.09002 * 109.47410 * 299.99839 * 16 15 14 42 42 H 1.08994 * 109.47445 * 60.00545 * 16 15 14 43 43 H 1.09000 * 109.46822 * 180.02562 * 16 15 14 44 44 H 1.08999 * 111.00520 * 153.48723 * 19 5 3 45 45 H 1.09004 * 111.00234 * 277.33808 * 19 5 3 46 46 H 1.08991 * 110.42248 * 204.29641 * 20 19 5 47 47 H 1.09003 * 110.29905 * 82.09076 * 20 19 5 48 48 H 0.96996 * 120.00460 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9839 0.8478 5 6 1.6412 2.1401 -1.3176 6 1 1.4635 1.4065 -2.1038 7 7 0.4593 2.9829 -1.1208 8 6 -0.3174 3.3106 -2.1724 9 8 -0.0375 2.9081 -3.2817 10 6 -1.5298 4.1827 -1.9709 11 6 -2.2260 4.4065 -3.3147 12 6 -3.4381 5.2791 -3.1134 13 6 -3.4798 6.6301 -3.1678 14 6 -4.8411 6.9411 -2.9135 15 8 -5.3984 8.1775 -2.8631 16 6 -6.7979 8.2473 -2.5828 17 7 -5.4490 5.7994 -2.7319 18 8 -4.6848 4.8684 -2.8395 19 6 2.8851 3.0072 -1.6469 20 6 4.0371 2.0989 -1.1428 21 7 3.5084 1.4537 0.0728 22 6 4.2604 0.9480 1.0994 23 1 3.7941 0.7099 2.0440 24 6 5.6220 0.7412 0.9260 25 7 6.1902 1.0309 -0.2254 26 14 6.6477 0.0507 2.3261 27 1 6.6644 -1.4320 2.2431 28 1 8.0360 0.5678 2.2246 29 1 6.0581 0.4672 3.6239 30 1 -0.3634 0.5979 0.8358 31 1 -0.3633 0.4250 -0.9358 32 1 -0.3633 -1.0228 0.0997 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 0.2356 3.3052 -0.2336 36 1 -2.2185 3.6939 -1.2818 37 1 -1.2219 5.1429 -1.5568 38 1 -1.5374 4.8953 -4.0038 39 1 -2.5339 3.4463 -3.7287 40 1 -2.6663 7.3135 -3.3614 41 1 -7.3500 7.7084 -3.3527 42 1 -6.9966 7.7967 -1.6104 43 1 -7.1146 9.2902 -2.5718 44 1 2.9647 3.1849 -2.7193 45 1 2.8621 3.9482 -1.0971 46 1 4.9160 2.6971 -0.9030 47 1 4.2833 1.3484 -1.8940 48 1 7.1416 0.8861 -0.3468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689174986.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:47 Heat of formation + Delta-G solvation = 6.414569 kcal Electronic energy + Delta-G solvation = -28989.393605 eV Core-core repulsion = 24855.906549 eV Total energy + Delta-G solvation = -4133.487056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.19713 -39.86458 -39.17743 -37.83138 -34.96831 -34.04263 -33.13936 -32.77337 -31.76981 -30.67166 -28.98184 -27.99789 -26.75076 -25.27926 -24.11078 -23.68586 -22.19832 -21.40625 -20.53687 -20.17364 -19.45280 -18.27731 -17.97781 -17.08361 -16.88511 -16.76785 -15.98595 -15.81737 -15.64332 -15.34623 -14.78024 -14.29593 -14.15171 -13.97926 -13.87205 -13.62643 -13.22575 -12.92852 -12.66505 -12.60036 -12.53098 -12.24443 -12.04010 -11.95681 -11.74008 -11.64390 -11.22700 -11.15995 -10.90552 -10.86628 -10.62674 -10.47225 -10.30711 -10.09260 -9.96181 -9.78504 -9.67398 -9.64548 -9.49567 -8.67817 -8.58868 -6.82791 -5.77551 -3.13984 1.07938 1.94398 2.40437 2.72161 2.75673 3.34601 3.38141 3.43405 3.44480 3.88418 4.41836 4.47119 4.54954 4.61619 4.69685 4.72976 4.77418 4.95045 5.06734 5.10840 5.22127 5.31807 5.34372 5.45468 5.49188 5.53108 5.60696 5.73108 5.73891 5.78691 5.84340 6.04094 6.20958 6.28122 6.39215 6.44889 6.55030 6.61094 6.65685 6.71775 6.93335 7.12386 7.48789 7.58695 7.68515 7.77024 7.91842 8.24046 8.35310 9.15962 9.76966 10.44659 11.34372 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.026102 B = 0.001915 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.438439 B =14615.257703 C =14803.230423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.138 3.862 6 H 0.093 0.907 7 N -0.713 5.713 8 C 0.514 3.486 9 O -0.543 6.543 10 C -0.140 4.140 11 C -0.026 4.026 12 C 0.004 3.996 13 C -0.233 4.233 14 C 0.208 3.792 15 O -0.285 6.285 16 C 0.032 3.968 17 N -0.412 5.412 18 O 0.100 5.900 19 C -0.156 4.156 20 C 0.174 3.826 21 N -0.594 5.594 22 C -0.228 4.228 23 H 0.075 0.925 24 C -0.004 4.004 25 N -0.916 5.916 26 Si 0.910 3.090 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.179 0.821 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.028 0.972 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.522 11.279 -4.359 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.033 3.967 6 H 0.111 0.889 7 N -0.363 5.363 8 C 0.299 3.701 9 O -0.421 6.421 10 C -0.180 4.180 11 C -0.064 4.064 12 C -0.060 4.060 13 C -0.255 4.255 14 C 0.010 3.990 15 O -0.191 6.191 16 C -0.063 4.063 17 N -0.139 5.139 18 O 0.040 5.960 19 C -0.196 4.196 20 C 0.049 3.951 21 N -0.318 5.318 22 C -0.356 4.356 23 H 0.093 0.907 24 C -0.201 4.201 25 N -0.562 5.562 26 Si 0.740 3.260 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.197 0.803 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.046 0.954 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.205 10.884 -4.875 25.205 hybrid contribution 0.876 0.196 1.090 1.412 sum -21.329 11.080 -3.785 24.332 Atomic orbital electron populations 1.21770 0.97247 1.00525 1.00880 1.22021 0.93580 0.99194 1.02416 1.21078 0.87089 0.93355 0.93218 0.94788 1.22116 0.83457 0.92408 0.98710 0.88862 1.46083 1.27569 1.52209 1.10430 1.20337 0.83941 0.80932 0.84876 1.90721 1.72637 1.54671 1.24025 1.21669 0.96318 1.01484 0.98576 1.19955 0.88876 0.99658 0.97931 1.24404 0.88212 0.93936 0.99433 1.21834 0.95508 0.95111 1.13065 1.22044 0.91413 0.85648 0.99923 1.86194 1.26100 1.19982 1.86847 1.23062 0.77968 1.03912 1.01402 1.74145 1.17162 0.95549 1.27020 1.84815 1.15189 1.29254 1.66763 1.23451 0.96799 0.99022 1.00311 1.21464 0.93107 0.92927 0.87650 1.44435 0.98362 1.68344 1.20690 1.18929 0.89908 1.35951 0.90860 0.90725 1.24915 0.97260 1.00907 0.96988 1.69926 1.10688 1.52755 1.22864 0.86157 0.79679 0.78884 0.81242 1.21517 1.21689 1.20652 0.93469 0.93293 0.93699 0.92366 0.91747 0.76756 0.88260 0.88262 0.87196 0.88031 0.80336 0.92283 0.92235 0.87663 0.91862 0.92097 0.90843 0.95431 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.58 37.16 0.36 -1.70 16 2 C -0.13 -2.37 5.41 -26.73 -0.14 -2.52 16 3 C 0.16 3.04 2.94 -66.95 -0.20 2.84 16 4 H 0.03 0.63 7.70 -51.93 -0.40 0.23 16 5 C 0.14 2.31 1.96 -66.09 -0.13 2.18 16 6 H 0.09 1.73 7.26 -51.93 -0.38 1.35 16 7 N -0.71 -9.01 4.93 -52.03 -0.26 -9.26 16 8 C 0.51 6.20 7.83 -10.98 -0.09 6.12 16 9 O -0.54 -8.63 15.67 5.56 0.09 -8.54 16 10 C -0.14 -1.09 5.68 -27.88 -0.16 -1.24 16 11 C -0.03 -0.20 5.07 -27.88 -0.14 -0.34 16 12 C 0.00 0.03 6.73 -35.36 -0.24 -0.21 16 13 C -0.23 -2.05 11.11 -39.23 -0.44 -2.48 16 14 C 0.21 2.19 8.01 -16.65 -0.13 2.06 16 15 O -0.28 -2.78 10.57 -18.84 -0.20 -2.98 16 16 C 0.03 0.21 10.73 101.05 1.08 1.29 16 17 N -0.41 -4.66 11.54 30.38 0.35 -4.31 16 18 O 0.10 1.04 11.19 17.06 0.19 1.23 16 19 C -0.16 -2.90 6.79 -24.46 -0.17 -3.07 16 20 C 0.17 4.08 5.42 -2.42 -0.01 4.06 16 21 N -0.59 -14.23 3.13 -162.45 -0.51 -14.74 16 22 C -0.23 -6.04 9.75 -15.06 -0.15 -6.19 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C 0.00 -0.10 5.47 -17.43 -0.10 -0.19 16 25 N -0.92 -26.18 10.57 55.49 0.59 -25.59 16 26 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.68 7.40 -51.93 -0.38 0.29 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 34 H 0.06 1.25 7.90 -51.93 -0.41 0.84 16 35 H 0.40 4.10 8.34 -40.82 -0.34 3.76 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 38 H 0.11 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 40 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 47 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 48 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -32.15 396.26 -7.17 -39.32 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.72 Total: 1.80 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.64 Total: 0.62 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.17 Total: -53.91 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.15 -7.17 -39.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689174986.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.730 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds