Wall clock time and date at job start Tue Mar 31 2020 20:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47237 * 2 1 4 4 H 1.08999 * 109.46703 * 55.37358 * 3 2 1 5 5 C 1.52995 * 109.47072 * 175.37157 * 3 2 1 6 6 N 1.46504 * 109.47132 * 175.00127 * 5 3 2 7 7 C 1.34772 * 119.99995 * 180.02562 * 6 5 3 8 8 O 1.21614 * 120.00302 * 0.02562 * 7 6 5 9 9 C 1.47380 * 119.99849 * 179.97438 * 7 6 5 10 10 C 1.47021 * 127.18941 * 89.71084 * 9 7 6 11 11 C 1.50699 * 127.02333 * 359.97438 * 10 9 7 12 12 C 1.34183 * 105.95243 * 179.82881 * 10 9 7 13 13 O 1.34207 * 109.12386 * 0.43776 * 12 10 9 14 14 C 1.33654 * 110.90964 * 359.70815 * 13 12 10 15 15 C 1.50698 * 125.80197 * 180.02562 * 14 13 12 16 16 N 1.46893 * 109.47207 * 295.37523 * 3 2 1 17 17 C 1.46903 * 111.00045 * 302.88866 * 16 3 2 18 18 C 1.50701 * 109.47227 * 185.63393 * 17 16 3 19 19 O 1.21287 * 119.99954 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00043 * 179.97438 * 18 17 16 21 21 C 1.37088 * 120.00149 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99759 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00210 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00166 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00361 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46980 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47054 * 120.00226 * 25 23 21 28 28 H 1.48497 * 109.47398 * 240.00492 * 25 23 21 29 29 H 1.08997 * 109.46756 * 178.72694 * 1 2 3 30 30 H 1.08996 * 109.47140 * 298.73000 * 1 2 3 31 31 H 1.08999 * 109.46504 * 58.72892 * 1 2 3 32 32 H 1.08999 * 109.47332 * 239.99563 * 2 1 3 33 33 H 1.09006 * 109.46959 * 119.99985 * 2 1 3 34 34 H 1.08999 * 109.47624 * 295.00285 * 5 3 2 35 35 H 1.09002 * 109.47278 * 55.00249 * 5 3 2 36 36 H 0.96996 * 119.99697 * 359.97438 * 6 5 3 37 37 H 1.09001 * 109.47196 * 89.99675 * 11 10 9 38 38 H 1.08998 * 109.47408 * 210.00000 * 11 10 9 39 39 H 1.09002 * 109.47045 * 330.00298 * 11 10 9 40 40 H 1.07995 * 125.43523 * 180.14165 * 12 10 9 41 41 H 1.09004 * 109.47118 * 269.99646 * 15 14 13 42 42 H 1.09005 * 109.47238 * 29.99212 * 15 14 13 43 43 H 1.09001 * 109.47425 * 149.99868 * 15 14 13 44 44 H 1.00906 * 111.00204 * 66.83479 * 16 3 2 45 45 H 1.08998 * 109.46655 * 305.63601 * 17 16 3 46 46 H 1.09004 * 109.47063 * 65.63462 * 17 16 3 47 47 H 0.96998 * 119.99595 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00177 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6106 1.9796 0.8457 5 6 3.5656 1.4440 0.1164 6 7 4.0632 2.8168 -0.0034 7 6 5.3863 3.0627 0.0689 8 8 6.1673 2.1450 0.2331 9 6 5.8868 4.4436 -0.0522 10 6 6.0948 5.4119 1.0343 11 6 5.8389 5.1960 2.5036 12 6 6.5621 6.5262 0.4508 13 8 6.6458 6.3269 -0.8738 14 6 6.2483 5.0924 -1.1965 15 6 6.2071 4.5149 -2.5878 16 7 1.6438 2.1020 -1.2513 17 6 2.1484 1.3650 -2.4176 18 6 1.8430 2.1410 -3.6729 19 8 1.2626 3.2036 -3.6028 20 7 2.2158 1.6546 -4.8733 21 6 1.9385 2.3607 -6.0151 22 1 1.4216 3.3070 -5.9527 23 6 2.3223 1.8591 -7.2527 24 7 2.9508 0.7075 -7.3287 25 14 1.9451 2.8216 -8.8086 26 1 1.2357 4.0772 -8.4541 27 1 3.2136 3.1505 -9.5070 28 1 1.0864 2.0026 -9.7014 29 1 -0.3633 -1.0274 -0.0228 30 1 -0.3633 0.4940 0.9011 31 1 -0.3632 0.5335 -0.8784 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.8567 1.0352 1.0840 35 1 3.9914 0.8325 -0.6792 36 1 3.4403 3.5485 -0.1355 37 1 6.7401 4.8047 2.9757 38 1 5.5674 6.1438 2.9684 39 1 5.0241 4.4830 2.6296 40 1 6.8241 7.4393 0.9645 41 1 5.2337 4.7152 -3.0357 42 1 6.9876 4.9737 -3.1949 43 1 6.3701 3.4383 -2.5394 44 1 0.6421 2.2135 -1.2998 45 1 3.2264 1.2329 -2.3252 46 1 1.6657 0.3889 -2.4673 47 1 2.6803 0.8050 -4.9292 48 1 3.2184 0.3571 -8.1927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698598921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:02 Heat of formation + Delta-G solvation = -69.981946 kcal Electronic energy + Delta-G solvation = -29884.274878 eV Core-core repulsion = 25747.475021 eV Total energy + Delta-G solvation = -4136.799857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.55979 -39.58011 -38.52237 -37.25721 -34.12143 -33.97425 -33.79582 -32.46499 -31.78414 -31.17710 -29.03362 -28.02710 -26.74646 -26.31244 -24.36283 -23.86910 -22.28133 -20.48385 -19.98540 -19.58570 -19.07298 -17.95002 -17.64028 -16.83937 -16.45838 -15.88129 -15.73641 -15.46869 -15.02106 -14.82387 -14.36738 -14.24834 -14.11269 -13.84381 -13.63519 -13.46550 -13.37357 -13.35922 -12.98219 -12.83109 -12.72777 -12.50356 -12.42035 -12.32308 -11.92925 -11.78926 -11.52184 -11.41916 -11.35596 -11.10938 -10.88859 -10.79322 -10.35880 -10.23638 -10.00497 -9.52975 -9.44645 -8.94527 -8.52538 -8.48749 -8.09258 -7.97177 -6.42842 -3.83774 1.63284 2.17664 2.63825 2.83127 3.14997 3.25917 3.32489 3.38272 3.89739 4.08442 4.32333 4.44386 4.61452 4.73900 4.82849 4.92890 4.96846 5.09332 5.14575 5.23644 5.26729 5.28238 5.41999 5.45788 5.55887 5.56584 5.58518 5.60143 5.68293 5.73619 5.74959 5.80374 5.86027 5.88196 5.97029 6.06798 6.18017 6.19032 6.25366 6.32927 6.52096 7.04765 7.12804 7.53968 7.55582 7.67061 8.05113 8.32897 8.60022 9.16959 9.53438 10.04740 10.74836 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008779 B = 0.003658 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.515070 B = 7651.679437 C = 9982.681515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.074 3.926 4 H 0.089 0.911 5 C 0.126 3.874 6 N -0.702 5.702 7 C 0.593 3.407 8 O -0.543 6.543 9 C -0.234 4.234 10 C -0.150 4.150 11 C -0.083 4.083 12 C -0.045 4.045 13 O -0.173 6.173 14 C 0.057 3.943 15 C -0.085 4.085 16 N -0.658 5.658 17 C 0.044 3.956 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.927 3.073 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.413 0.587 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.205 0.795 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.352 0.648 45 H 0.086 0.914 46 H 0.048 0.952 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.057 3.697 17.855 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.037 4.037 4 H 0.107 0.893 5 C 0.002 3.998 6 N -0.354 5.354 7 C 0.378 3.622 8 O -0.421 6.421 9 C -0.238 4.238 10 C -0.152 4.152 11 C -0.140 4.140 12 C -0.111 4.111 13 O -0.070 6.070 14 C 0.005 3.995 15 C -0.141 4.141 16 N -0.291 5.291 17 C -0.089 4.089 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.249 0.751 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.221 0.779 41 H 0.116 0.884 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.173 0.827 45 H 0.104 0.896 46 H 0.066 0.934 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.887 4.312 17.649 18.579 hybrid contribution -0.750 -0.697 -0.810 1.306 sum 3.137 3.615 16.839 17.506 Atomic orbital electron populations 1.21755 0.95262 1.01992 1.02009 1.22214 0.96763 0.97934 1.03101 1.21908 0.94205 0.93553 0.94038 0.89264 1.21428 0.92969 0.83632 1.01795 1.45817 1.06904 1.10131 1.72536 1.17270 0.82197 0.86768 0.75949 1.90784 1.56340 1.45525 1.49426 1.20948 1.13249 0.96209 0.93410 1.21296 1.05036 0.92748 0.96114 1.20157 1.02123 1.02269 0.89405 1.23558 1.06842 1.00586 0.80110 1.83730 1.67171 1.30674 1.25386 1.22667 0.97984 0.82241 0.96576 1.20518 1.04876 1.01044 0.87637 1.60190 1.19487 1.49859 0.99532 1.21766 1.01145 0.95327 0.90657 1.19796 0.85265 0.87929 0.84262 1.90521 1.45931 1.23664 1.86516 1.41872 1.51592 1.21793 1.04835 1.19726 1.35183 1.04728 0.83171 0.87920 1.25247 0.96871 0.96377 0.99389 1.69618 1.39702 1.18625 1.26263 0.85834 0.78128 0.79559 0.81029 1.19231 1.20737 1.20796 0.92490 0.92582 0.92436 0.90973 0.91323 0.91278 0.91297 0.75103 0.91207 0.91259 0.91537 0.77883 0.88422 0.89850 0.89010 0.82728 0.89601 0.93432 0.77557 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.70 37.16 0.36 -1.06 16 2 C -0.16 -1.55 5.10 -26.73 -0.14 -1.69 16 3 C 0.07 0.79 2.70 -67.72 -0.18 0.61 16 4 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 5 C 0.13 1.53 4.76 -4.04 -0.02 1.51 16 6 N -0.70 -9.39 5.39 -61.40 -0.33 -9.72 16 7 C 0.59 9.21 7.25 -12.54 -0.09 9.11 16 8 O -0.54 -10.14 17.11 5.27 0.09 -10.05 16 9 C -0.23 -3.39 6.07 -103.28 -0.63 -4.02 16 10 C -0.15 -1.81 6.38 -102.49 -0.65 -2.46 16 11 C -0.08 -0.77 10.38 36.01 0.37 -0.39 16 12 C -0.04 -0.48 11.96 29.30 0.35 -0.13 16 13 O -0.17 -2.28 10.52 7.67 0.08 -2.20 16 14 C 0.06 0.81 7.37 -34.97 -0.26 0.55 16 15 C -0.08 -1.13 10.24 36.00 0.37 -0.76 16 16 N -0.66 -9.21 5.32 -108.00 -0.57 -9.79 16 17 C 0.04 0.72 5.31 -4.97 -0.03 0.69 16 18 C 0.44 9.94 7.83 -10.98 -0.09 9.85 16 19 O -0.58 -15.02 15.90 5.55 0.09 -14.93 16 20 N -0.56 -13.88 5.29 -10.97 -0.06 -13.93 16 21 C -0.30 -8.13 9.68 -14.94 -0.14 -8.28 16 22 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 25 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.61 6.87 -51.93 -0.36 0.25 16 32 H 0.07 0.77 6.23 -51.93 -0.32 0.45 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.94 6.61 -51.93 -0.34 0.59 16 36 H 0.41 5.44 8.12 -40.82 -0.33 5.10 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 44 H 0.35 5.07 7.29 -39.29 -0.29 4.79 16 45 H 0.09 1.40 6.22 -51.93 -0.32 1.07 16 46 H 0.05 0.72 6.48 -51.93 -0.34 0.38 16 47 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 402.28 15.07 6.06 6.06 Total: -1.00 -32.95 402.28 -7.00 -39.95 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -7.20 Total: 18.31 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.87 Total: 4.04 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.24 Total: -56.93 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: 0.26 Total: -27.18 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.95 -7.00 -39.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698598921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.028 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds