Wall clock time and date at job start Tue Mar 31 2020 19:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47147 * 2 1 4 4 C 1.53003 * 109.47530 * 119.99875 * 2 1 3 5 5 H 1.09002 * 109.46892 * 300.00794 * 4 2 1 6 6 C 1.52996 * 109.47530 * 179.97438 * 4 2 1 7 7 N 1.46498 * 109.47059 * 184.99929 * 6 4 2 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 6 4 9 9 O 1.21613 * 119.99962 * 0.28066 * 8 7 6 10 10 C 1.47417 * 120.00113 * 180.27547 * 8 7 6 11 11 N 1.36072 * 126.44733 * 359.69684 * 10 8 7 12 12 C 1.29939 * 108.47459 * 179.85743 * 11 10 8 13 13 O 1.34050 * 109.24394 * 0.40304 * 12 11 10 14 14 C 1.34258 * 108.22690 * 359.74607 * 13 12 11 15 15 C 1.50703 * 126.52336 * 179.97438 * 14 13 12 16 16 H 1.08993 * 109.82231 * 195.74325 * 15 14 13 17 17 C 1.54380 * 109.82692 * 74.85430 * 15 14 13 18 18 C 1.55449 * 102.18794 * 219.18115 * 17 15 14 19 19 C 1.54941 * 100.98806 * 34.03895 * 18 17 15 20 20 O 1.43237 * 109.83123 * 316.63298 * 15 14 13 21 21 N 1.46506 * 109.46609 * 60.00199 * 4 2 1 22 22 C 1.36937 * 119.99934 * 274.99832 * 21 4 2 23 23 H 1.07998 * 120.00035 * 0.02562 * 22 21 4 24 24 C 1.38810 * 120.00229 * 180.02562 * 22 21 4 25 25 N 1.31626 * 119.99636 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00308 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47420 * 89.99861 * 26 24 22 28 28 H 1.48504 * 109.47183 * 210.00218 * 26 24 22 29 29 H 1.48504 * 109.46991 * 329.99840 * 26 24 22 30 30 H 1.08997 * 109.46989 * 299.99860 * 1 2 3 31 31 H 1.09001 * 109.46987 * 60.00039 * 1 2 3 32 32 H 1.09003 * 109.46613 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47682 * 240.00185 * 2 1 3 34 34 H 1.09001 * 109.47177 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.46889 * 300.00268 * 3 2 1 36 36 H 1.09003 * 109.46618 * 60.00125 * 3 2 1 37 37 H 1.09004 * 109.47066 * 65.00196 * 6 4 2 38 38 H 1.08994 * 109.46974 * 305.00344 * 6 4 2 39 39 H 0.97001 * 120.00384 * 0.02562 * 7 6 4 40 40 H 1.07996 * 125.37446 * 180.10994 * 12 11 10 41 41 H 1.08997 * 110.85296 * 337.32534 * 17 15 14 42 42 H 1.09010 * 110.84475 * 100.94025 * 17 15 14 43 43 H 1.09009 * 111.05696 * 276.12833 * 18 17 15 44 44 H 1.08996 * 111.18454 * 152.01318 * 18 17 15 45 45 H 1.09003 * 110.31494 * 204.68997 * 19 18 17 46 46 H 1.09007 * 110.30595 * 82.52041 * 19 18 17 47 47 H 0.97000 * 120.00390 * 95.00648 * 21 4 2 48 48 H 0.97001 * 119.99765 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2489 7 7 4.0583 -1.5140 2.3804 8 6 5.3834 -1.6603 2.5786 9 8 6.1737 -1.1305 1.8212 10 6 5.8747 -2.4625 3.7136 11 7 5.1122 -3.1043 4.6400 12 6 5.9022 -3.7054 5.4785 13 8 7.1756 -3.4687 5.1332 14 6 7.1763 -2.6957 4.0354 15 6 8.3878 -2.1834 3.3000 16 1 8.0990 -1.3717 2.6323 17 6 9.0292 -3.3279 2.4863 18 6 10.5477 -3.0562 2.6784 19 6 10.5668 -2.4942 4.1222 20 8 9.3645 -1.7168 4.2381 21 7 1.5517 -2.1025 1.2492 22 6 0.3102 -2.3898 1.7504 23 1 -0.3091 -1.5981 2.1454 24 6 -0.1523 -3.6986 1.7508 25 7 0.6024 -4.6634 1.2690 26 14 -1.8462 -4.0904 2.4339 27 1 -2.8524 -3.9977 1.3457 28 1 -1.8480 -5.4658 2.9940 29 1 -2.1847 -3.1192 3.5052 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.9338 0.3019 1.3383 38 1 3.9330 -1.1563 0.3176 39 1 3.4280 -1.9368 2.9844 40 1 5.5831 -4.2978 6.3232 41 1 8.7538 -4.2986 2.8985 42 1 8.7514 -3.2590 1.4344 43 1 10.9065 -2.3154 1.9638 44 1 11.1248 -3.9782 2.6080 45 1 11.4420 -1.8618 4.2706 46 1 10.5612 -3.3097 4.8456 47 1 2.1079 -2.8136 0.8942 48 1 0.2790 -5.5779 1.2689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715731069.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:18 Heat of formation + Delta-G solvation = -55.251202 kcal Electronic energy + Delta-G solvation = -29970.414324 eV Core-core repulsion = 25834.253239 eV Total energy + Delta-G solvation = -4136.161084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.44814 -39.61356 -39.24711 -37.21839 -34.80235 -33.83740 -33.08455 -32.54886 -31.70481 -30.38565 -28.71221 -27.77231 -26.11537 -24.53538 -23.52091 -23.28581 -22.09596 -21.83284 -21.02655 -20.28951 -19.33760 -18.13741 -17.14262 -17.00977 -16.76544 -16.56638 -15.95188 -15.71288 -15.24168 -15.09845 -14.56334 -14.18145 -13.94964 -13.90090 -13.67708 -13.38875 -13.36318 -13.26548 -12.77106 -12.20477 -12.13000 -12.04983 -12.00627 -11.60921 -11.60580 -11.32025 -11.23039 -11.02652 -10.91682 -10.81535 -10.75752 -10.63448 -10.27799 -10.10411 -10.07668 -9.93966 -9.79782 -9.51070 -9.02490 -8.88465 -8.57491 -6.99205 -5.77788 -3.06826 1.05369 2.13089 2.50474 3.40157 3.41606 3.44717 3.48428 3.49329 3.65662 4.06672 4.18547 4.28888 4.55949 4.57239 4.81412 4.91772 4.98981 5.12199 5.35725 5.36549 5.39674 5.41329 5.43265 5.54245 5.56552 5.60069 5.65093 5.68591 5.77845 5.91362 5.93721 6.00100 6.10419 6.20914 6.26021 6.39621 6.47050 6.55457 6.62916 6.64756 6.68616 6.90968 7.09026 7.31754 7.44684 7.70254 7.95693 8.38991 8.47682 9.51212 10.05686 10.41482 11.44049 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.003088 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.815204 B = 9066.080800 C =10521.187183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.112 3.888 7 N -0.689 5.689 8 C 0.597 3.403 9 O -0.552 6.552 10 C -0.054 4.054 11 N -0.451 5.451 12 C 0.174 3.826 13 O -0.193 6.193 14 C 0.021 3.979 15 C 0.157 3.843 16 H 0.146 0.854 17 C -0.147 4.147 18 C -0.154 4.154 19 C 0.046 3.954 20 O -0.369 6.369 21 N -0.720 5.720 22 C -0.235 4.235 23 H 0.073 0.927 24 C -0.010 4.010 25 N -0.928 5.928 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.282 1.282 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.420 0.580 40 H 0.255 0.745 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.385 0.615 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.660 4.169 4.743 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.012 4.012 7 N -0.339 5.339 8 C 0.382 3.618 9 O -0.432 6.432 10 C -0.175 4.175 11 N -0.180 5.180 12 C -0.055 4.055 13 O -0.079 6.079 14 C -0.036 4.036 15 C 0.099 3.901 16 H 0.163 0.837 17 C -0.184 4.184 18 C -0.192 4.192 19 C -0.030 4.030 20 O -0.288 6.288 21 N -0.362 5.362 22 C -0.366 4.366 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.734 3.266 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.258 0.742 40 H 0.271 0.729 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.219 0.781 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.318 4.678 4.484 18.490 hybrid contribution -0.642 -1.157 0.570 1.441 sum 16.676 3.520 5.054 17.777 Atomic orbital electron populations 1.21820 0.94922 1.03932 0.98988 1.21728 0.96950 0.94382 0.99990 1.21947 1.00486 0.97341 1.00945 1.20550 0.89130 0.88320 0.96098 0.92799 1.21836 0.95966 0.94844 0.88572 1.45818 1.06169 1.51339 1.30546 1.16704 0.83150 0.79562 0.82415 1.90697 1.55627 1.50190 1.46662 1.21596 0.89680 1.05925 1.00298 1.70880 1.33966 1.09758 1.03391 1.28110 0.75630 1.00823 1.00891 1.84370 1.33123 1.53173 1.37275 1.24101 0.97465 0.94361 0.87709 1.21790 0.82873 0.97787 0.87630 0.83705 1.23219 0.94761 0.98314 1.02131 1.23324 0.96001 1.02486 0.97342 1.23474 0.87919 0.95442 0.96174 1.88535 1.23859 1.56712 1.59655 1.42448 1.18120 1.01810 1.73800 1.19178 0.92661 0.92364 1.32420 0.90940 1.24719 0.98246 0.95873 1.01809 1.69668 1.36734 0.99816 1.51408 0.86266 0.84435 0.77371 0.78563 1.21836 1.21910 1.20772 0.94045 0.95003 0.89471 0.91868 0.93027 0.93562 0.93170 0.91261 0.91571 0.74178 0.72914 0.90197 0.88468 0.89727 0.89443 0.89186 0.91979 0.78101 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.26 37.16 0.31 -2.21 16 2 C -0.11 -1.86 2.69 -90.62 -0.24 -2.10 16 3 C -0.15 -2.10 8.84 37.16 0.33 -1.77 16 4 C 0.17 3.18 2.18 -67.93 -0.15 3.03 16 5 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 6 C 0.11 1.94 4.73 -4.04 -0.02 1.92 16 7 N -0.69 -12.57 5.38 -61.39 -0.33 -12.90 16 8 C 0.60 10.78 7.81 -12.52 -0.10 10.68 16 9 O -0.55 -10.29 14.57 5.27 0.08 -10.21 16 10 C -0.05 -0.91 6.99 -83.02 -0.58 -1.49 16 11 N -0.45 -7.29 11.06 -11.48 -0.13 -7.42 16 12 C 0.17 2.11 13.19 51.96 0.69 2.80 16 13 O -0.19 -2.54 10.73 6.45 0.07 -2.47 16 14 C 0.02 0.31 6.20 -35.08 -0.22 0.09 16 15 C 0.16 2.03 3.77 -27.16 -0.10 1.93 16 16 H 0.15 2.07 5.84 -51.93 -0.30 1.76 16 17 C -0.15 -1.48 6.55 -24.71 -0.16 -1.64 16 18 C -0.15 -1.15 7.16 -24.41 -0.17 -1.33 16 19 C 0.05 0.40 7.78 38.18 0.30 0.70 16 20 O -0.37 -4.68 11.00 -35.29 -0.39 -5.06 16 21 N -0.72 -16.68 4.44 -53.42 -0.24 -16.92 16 22 C -0.24 -6.04 7.57 -15.06 -0.11 -6.16 16 23 H 0.07 1.83 7.39 -52.49 -0.39 1.44 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -27.05 13.06 55.49 0.72 -26.32 16 26 Si 0.90 21.80 29.55 -169.99 -5.02 16.77 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 1.87 6.01 -51.93 -0.31 1.55 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.68 6.55 -51.93 -0.34 0.34 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.11 6.71 -51.93 -0.35 0.76 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.42 8.25 7.87 -40.82 -0.32 7.93 16 40 H 0.26 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.08 0.80 7.84 -51.93 -0.41 0.40 16 42 H 0.10 0.96 8.14 -51.92 -0.42 0.53 16 43 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 44 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -31.40 390.35 -7.06 -38.46 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -7.37 Total: 16.11 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.34 Total: 4.07 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: 0.03 Total: -63.56 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.24 Total: -17.74 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.40 -7.06 -38.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715731069.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.789 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds