Wall clock time and date at job start Tue Mar 31 2020 20:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 H 1.09006 * 109.46825 * 54.37253 * 3 2 1 5 5 C 1.52999 * 109.47207 * 294.37424 * 3 2 1 6 6 N 1.46498 * 109.46924 * 184.99993 * 5 3 2 7 7 C 1.34784 * 120.00174 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99369 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00373 * 180.27428 * 7 6 5 10 10 H 1.08998 * 109.47133 * 299.72377 * 9 7 6 11 11 C 1.52999 * 109.47054 * 59.72045 * 9 7 6 12 12 C 1.50703 * 109.47107 * 179.72153 * 9 7 6 13 13 C 1.34509 * 125.78889 * 119.99911 * 12 9 7 14 14 C 1.41387 * 106.83781 * 179.97438 * 13 12 9 15 15 C 1.34515 * 106.84068 * 0.02562 * 14 13 12 16 16 O 1.34297 * 108.42277 * 359.73318 * 15 14 13 17 17 N 1.46892 * 109.47397 * 174.36975 * 3 2 1 18 18 C 1.46906 * 110.99989 * 273.38859 * 17 3 2 19 19 C 1.50708 * 109.47174 * 174.77865 * 18 17 3 20 20 O 1.21289 * 119.99500 * 0.02562 * 19 18 17 21 21 N 1.34769 * 119.99929 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00024 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99857 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00158 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99953 * 180.02562 * 24 22 21 26 26 Si 1.86795 * 119.99948 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46961 * 90.00541 * 26 24 22 28 28 H 1.48497 * 109.47320 * 210.00160 * 26 24 22 29 29 H 1.48496 * 109.47459 * 330.00496 * 26 24 22 30 30 H 1.09004 * 109.46931 * 305.80196 * 1 2 3 31 31 H 1.08996 * 109.47176 * 65.80868 * 1 2 3 32 32 H 1.09005 * 109.46997 * 185.80870 * 1 2 3 33 33 H 1.09005 * 109.47147 * 240.00650 * 2 1 3 34 34 H 1.08999 * 109.47352 * 120.00166 * 2 1 3 35 35 H 1.08995 * 109.47681 * 64.99796 * 5 3 2 36 36 H 1.08998 * 109.46892 * 304.99228 * 5 3 2 37 37 H 0.97000 * 120.00450 * 359.97438 * 6 5 3 38 38 H 1.08999 * 109.47616 * 60.00118 * 11 9 7 39 39 H 1.09004 * 109.47103 * 180.02562 * 11 9 7 40 40 H 1.08998 * 109.47102 * 300.00008 * 11 9 7 41 41 H 1.08001 * 126.57821 * 359.96855 * 13 12 9 42 42 H 1.08003 * 126.57622 * 180.02562 * 14 13 12 43 43 H 1.07994 * 125.78546 * 180.02562 * 15 14 13 44 44 H 1.00900 * 111.00389 * 149.43800 * 17 3 2 45 45 H 1.08993 * 109.47227 * 294.77946 * 18 17 3 46 46 H 1.09002 * 109.46870 * 54.78057 * 18 17 3 47 47 H 0.96996 * 120.00476 * 0.02562 * 21 19 18 48 48 H 0.97004 * 120.00179 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 0.8354 5 6 1.6487 2.1218 -1.3139 6 7 2.2381 3.4620 -1.3651 7 6 2.0262 4.2509 -2.4372 8 8 1.3480 3.8510 -3.3597 9 6 2.6375 5.6272 -2.4927 10 1 2.2704 6.2218 -1.6562 11 6 4.1608 5.5124 -2.4069 12 6 2.2562 6.2944 -3.7890 13 6 1.5696 7.4448 -3.9094 14 6 1.4369 7.6996 -5.2938 15 6 2.0498 6.6893 -5.9365 16 8 2.5490 5.8440 -5.0200 17 7 3.5026 1.4448 0.1359 18 6 3.9001 1.4094 1.5497 19 6 5.3987 1.2835 1.6473 20 8 6.0696 1.2292 0.6383 21 7 5.9934 1.2324 2.8556 22 6 7.3566 1.1174 2.9443 23 1 7.9540 1.0681 2.0459 24 6 7.9697 1.0641 4.1901 25 7 9.2765 0.9543 4.2751 26 14 6.9366 1.1499 5.7440 27 1 6.5447 -0.2224 6.1543 28 1 7.7267 1.7844 6.8294 29 1 5.7169 1.9560 5.4836 30 1 -0.3633 0.6012 0.8335 31 1 -0.3633 0.4211 -0.9374 32 1 -0.3633 -1.0224 0.1040 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.5632 2.1998 -1.3735 36 1 2.0172 1.5307 -2.1523 37 1 2.7803 3.7820 -0.6272 38 1 4.5281 4.9178 -3.2434 39 1 4.6030 6.5079 -2.4466 40 1 4.4366 5.0299 -1.4693 41 1 1.1921 8.0564 -3.1033 42 1 0.9389 8.5434 -5.7481 43 1 2.1312 6.5793 -7.0077 44 1 3.9082 2.2404 -0.3339 45 1 3.5800 2.3286 2.0402 46 1 3.4311 0.5549 2.0376 47 1 5.4569 1.2762 3.6625 48 1 9.7046 0.9175 5.1448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753486039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:01 Heat of formation + Delta-G solvation = -56.755100 kcal Electronic energy + Delta-G solvation = -29002.624732 eV Core-core repulsion = 24866.398433 eV Total energy + Delta-G solvation = -4136.226298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.75552 -40.11071 -38.67273 -37.41910 -34.61071 -34.16094 -33.85367 -33.00748 -32.73889 -31.68060 -29.09594 -28.39476 -26.37140 -24.95477 -23.94627 -23.54112 -21.95167 -21.35107 -20.56337 -19.97783 -19.44401 -18.49065 -17.87009 -17.19862 -16.54746 -16.15373 -16.04635 -15.54651 -15.38875 -15.17151 -14.83553 -14.79256 -14.12905 -13.99021 -13.87806 -13.55856 -13.36499 -13.15862 -12.98302 -12.90600 -12.76406 -12.60878 -12.50666 -12.25003 -12.03087 -11.90323 -11.86064 -11.73215 -11.51154 -11.27643 -11.18931 -10.68549 -10.63324 -10.10856 -10.01147 -9.98560 -9.61015 -9.30527 -8.66194 -8.65540 -8.25878 -8.20795 -6.34461 -3.86138 1.54985 2.38793 2.40588 2.77757 2.97664 2.98192 3.03520 3.11953 3.68882 3.91221 4.06725 4.22079 4.39232 4.53661 4.66172 4.68043 4.72982 4.87963 4.96290 4.97542 5.02054 5.16895 5.20452 5.33157 5.35086 5.42072 5.44208 5.54633 5.61816 5.61985 5.68610 5.69212 5.74825 5.82753 5.86855 5.92727 5.94968 6.05539 6.13292 6.27685 6.30123 6.97320 6.99026 7.17006 7.42006 7.54325 7.95450 8.10727 8.55972 8.91566 9.38615 9.78698 10.78592 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012448 B = 0.002440 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.799671 B =11471.382794 C =13040.244141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C 0.076 3.924 4 H 0.050 0.950 5 C 0.117 3.883 6 N -0.730 5.730 7 C 0.519 3.481 8 O -0.526 6.526 9 C -0.030 4.030 10 H 0.125 0.875 11 C -0.148 4.148 12 C 0.015 3.985 13 C -0.209 4.209 14 C -0.217 4.217 15 C -0.037 4.037 16 O -0.159 6.159 17 N -0.663 5.663 18 C 0.046 3.954 19 C 0.449 3.551 20 O -0.562 6.562 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.880 5.880 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.399 0.601 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.201 0.799 44 H 0.348 0.652 45 H 0.045 0.955 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.755 10.561 -10.076 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.034 4.034 4 H 0.068 0.932 5 C -0.006 4.006 6 N -0.383 5.383 7 C 0.304 3.696 8 O -0.401 6.401 9 C -0.051 4.051 10 H 0.143 0.857 11 C -0.206 4.206 12 C -0.036 4.036 13 C -0.228 4.228 14 C -0.237 4.237 15 C -0.105 4.105 16 O -0.054 6.054 17 N -0.298 5.298 18 C -0.086 4.086 19 C 0.234 3.766 20 O -0.443 6.443 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.520 5.520 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.218 0.782 44 H 0.169 0.831 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.358 9.261 -11.450 24.323 hybrid contribution -0.753 1.327 2.066 2.569 sum -20.111 10.588 -9.384 24.589 Atomic orbital electron populations 1.21847 0.95857 1.01876 1.01712 1.21491 0.94701 0.95138 1.03637 1.21863 0.88813 0.96968 0.95734 0.93178 1.21670 0.98534 0.81941 0.98475 1.46010 1.54216 1.16703 1.21391 1.20353 0.80614 0.86496 0.82089 1.90744 1.38609 1.74505 1.36214 1.19913 0.98757 0.93819 0.92658 0.85746 1.21852 0.90861 1.03937 1.03940 1.21512 1.02272 0.95260 0.84593 1.21526 1.05196 0.98658 0.97421 1.21766 1.06438 1.01791 0.93659 1.24037 1.00821 0.90895 0.94768 1.84044 1.61216 1.45539 1.14576 1.59998 1.06662 1.50339 1.12792 1.21796 0.95923 1.01225 0.89692 1.19678 0.88460 0.84265 0.84160 1.90578 1.65073 1.53594 1.35069 1.42209 1.08117 1.66702 1.05978 1.19424 0.80194 1.47624 0.96142 0.86275 1.25045 0.95684 0.97649 0.97810 1.69621 1.08081 1.48964 1.25372 0.86669 0.80116 0.78876 0.83677 1.19604 1.20196 1.19570 0.92874 0.92586 0.92444 0.90774 0.91164 0.90549 0.90202 0.76578 0.91056 0.90626 0.90647 0.83557 0.83539 0.78223 0.83102 0.93739 0.89264 0.79741 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.54 37.16 0.35 -0.91 16 2 C -0.11 -1.13 5.65 -26.73 -0.15 -1.28 16 3 C 0.08 0.80 2.26 -67.72 -0.15 0.65 16 4 H 0.05 0.47 7.83 -51.93 -0.41 0.06 16 5 C 0.12 1.24 4.95 -4.04 -0.02 1.22 16 6 N -0.73 -7.32 4.86 -60.30 -0.29 -7.61 16 7 C 0.52 6.16 7.15 -10.98 -0.08 6.08 16 8 O -0.53 -8.34 15.81 -0.88 -0.01 -8.35 16 9 C -0.03 -0.28 3.13 -92.92 -0.29 -0.58 16 10 H 0.12 0.80 8.10 -51.93 -0.42 0.38 16 11 C -0.15 -1.31 9.07 37.16 0.34 -0.98 16 12 C 0.01 0.17 5.19 -35.62 -0.19 -0.02 16 13 C -0.21 -2.11 10.78 -39.70 -0.43 -2.54 16 14 C -0.22 -2.05 10.91 -39.70 -0.43 -2.48 16 15 C -0.04 -0.36 12.09 29.42 0.36 -0.01 16 16 O -0.16 -2.03 10.36 -0.72 -0.01 -2.03 16 17 N -0.66 -9.24 5.84 -107.99 -0.63 -9.87 16 18 C 0.05 0.70 5.93 -4.97 -0.03 0.67 16 19 C 0.45 9.67 7.83 -10.98 -0.09 9.59 16 20 O -0.56 -14.55 15.89 5.55 0.09 -14.47 16 21 N -0.59 -13.51 5.09 -10.96 -0.06 -13.56 16 22 C -0.31 -8.42 10.16 -14.93 -0.15 -8.57 16 23 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 24 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -25.32 13.96 55.50 0.77 -24.55 16 26 Si 0.88 18.86 27.74 -169.99 -4.71 14.14 16 27 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 28 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 29 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.45 6.99 -51.93 -0.36 0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.76 7.41 -51.93 -0.38 0.37 16 35 H 0.08 0.77 6.97 -51.93 -0.36 0.41 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.40 3.33 6.81 -40.82 -0.28 3.06 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.61 7.56 -51.93 -0.39 0.21 16 41 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 43 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.35 4.90 6.61 -39.29 -0.26 4.64 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.09 1.21 7.38 -51.93 -0.38 0.83 16 47 H 0.37 7.38 5.76 -40.82 -0.24 7.15 16 48 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -35.82 398.72 -7.17 -42.99 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -7.27 Total: 15.45 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.06 Total: 1.85 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.20 Total: -55.59 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.07 Total: -24.85 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.14 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.82 -7.17 -42.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753486039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.763 kcal (2) G-P(sol) polarization free energy of solvation -35.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds