Wall clock time and date at job start Tue Mar 31 2020 19:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47008 * 2 1 4 4 N 1.46501 * 109.47201 * 180.02562 * 3 2 1 5 5 C 1.37097 * 119.99956 * 263.61927 * 4 3 2 6 6 H 1.08001 * 120.00053 * 142.25411 * 5 4 3 7 7 C 1.38948 * 119.99771 * 322.25301 * 5 4 3 8 8 N 1.31412 * 119.99786 * 157.63217 * 7 5 4 9 9 Si 1.86800 * 120.00333 * 337.62494 * 7 5 4 10 10 H 1.48505 * 109.46695 * 95.70174 * 9 7 5 11 11 H 1.48498 * 109.47254 * 215.70483 * 9 7 5 12 12 H 1.48500 * 109.47052 * 335.70491 * 9 7 5 13 13 C 1.34773 * 119.99943 * 83.61591 * 4 3 2 14 14 O 1.21291 * 120.00321 * 0.02562 * 13 4 3 15 15 C 1.50698 * 119.99978 * 180.02562 * 13 4 3 16 16 C 1.53001 * 109.47048 * 180.02562 * 15 13 4 17 17 N 1.46501 * 109.47013 * 179.97438 * 16 15 13 18 18 C 1.34011 * 124.22353 * 89.97718 * 17 16 15 19 19 O 1.21539 * 123.81349 * 359.94039 * 18 17 16 20 20 N 1.34983 * 112.37186 * 179.97438 * 18 17 16 21 21 C 1.45947 * 105.99181 * 0.02562 * 20 18 17 22 22 C 1.53570 * 112.00647 * 238.41400 * 21 20 18 23 23 C 1.54496 * 104.08615 * 275.01888 * 22 21 20 24 24 C 1.53971 * 106.66501 * 337.67654 * 23 22 21 25 25 C 1.53571 * 112.01213 * 121.58357 * 21 20 18 26 26 C 1.35217 * 124.22519 * 269.94986 * 17 16 15 27 27 O 1.21234 * 127.46102 * 0.04395 * 26 17 16 28 28 H 1.09003 * 109.47191 * 59.99757 * 1 2 3 29 29 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46879 * 299.99751 * 1 2 3 31 31 H 1.09000 * 109.47053 * 240.00701 * 2 1 3 32 32 H 1.08999 * 109.47340 * 119.99744 * 2 1 3 33 33 H 1.09004 * 109.47097 * 60.00382 * 3 2 1 34 34 H 1.09003 * 109.47343 * 300.00150 * 3 2 1 35 35 H 0.97006 * 120.00229 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47369 * 60.00026 * 15 13 4 37 37 H 1.09003 * 109.47205 * 299.99557 * 15 13 4 38 38 H 1.08997 * 109.47724 * 60.00155 * 16 15 13 39 39 H 1.08994 * 109.47444 * 299.99578 * 16 15 13 40 40 H 0.96994 * 127.00267 * 180.02562 * 20 18 17 41 41 H 1.09007 * 110.50242 * 156.36869 * 22 21 20 42 42 H 1.08999 * 110.51200 * 33.67219 * 22 21 20 43 43 H 1.09002 * 110.02139 * 218.37702 * 23 22 21 44 44 H 1.09001 * 110.02063 * 96.97930 * 23 22 21 45 45 H 1.08999 * 110.01793 * 119.30438 * 24 23 22 46 46 H 1.09002 * 110.01950 * 240.70246 * 24 23 22 47 47 H 1.09002 * 110.50665 * 326.32684 * 25 21 20 48 48 H 1.08997 * 110.50301 * 203.63307 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.5744 1.1791 6 1 5.1015 1.0163 1.3395 7 6 3.7146 2.4261 2.1682 8 7 4.0762 2.2476 3.4190 9 14 2.5605 3.8249 1.7202 10 1 1.1551 3.3939 1.9314 11 1 2.8519 5.0012 2.5784 12 1 2.7569 4.1914 0.2946 13 6 4.1783 1.3130 -1.1609 14 8 3.5715 1.1968 -2.2046 15 6 5.6853 1.3125 -1.1614 16 6 6.1947 1.1531 -2.5953 17 7 7.6597 1.1532 -2.5960 18 6 8.4135 0.0520 -2.4734 19 8 7.9591 -1.0681 -2.3471 20 7 9.7345 0.3275 -2.5052 21 6 9.8397 1.7743 -2.6665 22 6 10.6240 2.1569 -3.9302 23 6 12.1019 2.1189 -3.4815 24 6 12.1032 2.2896 -1.9513 25 6 10.6260 2.4256 -1.5194 26 6 8.4201 2.2643 -2.7208 27 8 8.0390 3.4081 -2.8481 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8901 34 1 1.6766 1.9564 -0.8900 35 1 3.7434 2.8419 4.1096 36 1 6.0486 0.4848 -0.5523 37 1 6.0491 2.2538 -0.7496 38 1 5.8315 1.9810 -3.2042 39 1 5.8310 0.2120 -3.0076 40 1 10.4650 -0.3067 -2.4352 41 1 10.3507 3.1592 -4.2603 42 1 10.4471 1.4310 -4.7239 43 1 12.6546 2.9342 -3.9483 44 1 12.5491 1.1621 -3.7507 45 1 12.5512 1.4154 -1.4788 46 1 12.6566 3.1876 -1.6764 47 1 10.4507 1.8923 -0.5851 48 1 10.3531 3.4759 -1.4176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299108874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:14 Heat of formation + Delta-G solvation = -84.585059 kcal Electronic energy + Delta-G solvation = -30466.129748 eV Core-core repulsion = 26328.696652 eV Total energy + Delta-G solvation = -4137.433096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.66719 -39.02980 -38.69165 -38.01419 -35.81154 -35.36471 -34.07999 -33.01984 -31.69225 -30.56735 -29.30723 -28.62251 -26.33282 -25.15470 -23.88987 -23.47558 -21.29493 -20.92591 -20.87940 -20.34472 -19.00214 -17.98508 -17.19300 -16.66167 -16.33430 -16.18955 -16.14050 -15.45380 -15.32911 -14.91187 -14.85162 -14.64819 -14.18694 -14.12123 -13.85448 -13.63514 -13.20660 -13.00037 -12.82090 -12.50028 -12.22546 -12.15815 -12.01293 -11.87583 -11.68051 -11.59159 -11.53131 -11.46963 -10.98297 -10.85496 -10.84972 -10.76617 -10.70998 -10.40848 -10.09605 -10.06877 -9.79510 -9.68560 -9.51653 -9.21284 -8.61521 -7.82873 -6.53115 -4.11790 1.58189 2.24116 3.02063 3.03343 3.06025 3.19661 3.29056 3.68931 3.77014 4.09614 4.09975 4.14158 4.37678 4.65127 4.82273 4.90544 4.97251 5.02403 5.11178 5.18992 5.35979 5.45169 5.49398 5.52958 5.56507 5.61238 5.64227 5.67796 5.75430 5.77791 5.81588 5.91011 5.91292 6.05460 6.21589 6.31037 6.37739 6.40564 6.44788 6.52631 6.70633 6.78617 6.91742 7.10495 7.34054 7.39619 8.03039 8.13781 8.20697 8.90426 9.30078 9.64735 10.57379 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.003222 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.850100 B = 8688.250571 C = 9477.677636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.104 3.896 4 N -0.460 5.460 5 C -0.348 4.348 6 H 0.103 0.897 7 C 0.070 3.930 8 N -0.856 5.856 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.260 1.260 13 C 0.485 3.515 14 O -0.600 6.600 15 C -0.133 4.133 16 C 0.134 3.866 17 N -0.575 5.575 18 C 0.702 3.298 19 O -0.536 6.536 20 N -0.715 5.715 21 C 0.111 3.889 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.119 4.119 26 C 0.535 3.465 27 O -0.459 6.459 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.275 0.725 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.438 0.562 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.239 -0.020 -10.128 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.019 4.019 4 N -0.180 5.180 5 C -0.475 4.475 6 H 0.121 0.879 7 C -0.138 4.138 8 N -0.491 5.491 9 Si 0.700 3.300 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.184 1.184 13 C 0.274 3.726 14 O -0.486 6.486 15 C -0.174 4.174 16 C 0.014 3.986 17 N -0.321 5.321 18 C 0.403 3.597 19 O -0.408 6.408 20 N -0.380 5.380 21 C 0.020 3.980 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.158 4.158 26 C 0.321 3.679 27 O -0.327 6.327 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.282 0.718 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.342 0.023 -10.408 16.921 hybrid contribution -0.235 0.469 0.342 0.627 sum 13.106 0.492 -10.066 16.533 Atomic orbital electron populations 1.21705 0.96348 1.01072 1.01347 1.21768 0.94839 0.97905 1.02549 1.21653 0.82420 0.96771 1.01040 1.43728 1.04039 1.63956 1.06247 1.19069 1.11022 1.26514 0.90878 0.87906 1.25326 0.96825 0.97059 0.94581 1.69779 1.43442 1.36254 0.99595 0.86987 0.80619 0.82457 0.79915 1.19998 1.21335 1.18437 1.20026 0.88860 0.80394 0.83272 1.90549 1.70444 1.55963 1.31673 1.21632 0.94931 1.04833 0.95999 1.21543 0.72891 1.05595 0.98594 1.46705 1.09883 1.08374 1.67100 1.16075 0.81979 0.84299 0.77389 1.91026 1.75211 1.20812 1.53782 1.45281 1.06566 1.07473 1.78672 1.21376 0.94524 0.82479 0.99670 1.22482 0.94741 1.03438 0.94911 1.22207 0.95525 1.02508 0.95754 1.22209 0.95692 1.02650 0.95471 1.22502 0.94469 1.02199 0.96580 1.20381 0.87791 0.84958 0.74773 1.90807 1.79100 1.17750 1.45066 0.93014 0.93012 0.93042 0.91795 0.91406 0.91404 0.91720 0.91433 0.89148 0.88861 0.88272 0.88109 0.71797 0.88991 0.90026 0.90862 0.91306 0.91237 0.90797 0.89672 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 37.16 0.37 -2.01 16 2 C -0.13 -2.62 6.21 -26.73 -0.17 -2.79 16 3 C 0.10 2.34 3.93 -4.04 -0.02 2.33 16 4 N -0.46 -11.20 2.18 -114.81 -0.25 -11.45 16 5 C -0.35 -9.06 9.05 -14.93 -0.14 -9.19 16 6 H 0.10 2.80 7.23 -52.49 -0.38 2.42 16 7 C 0.07 1.84 5.26 -17.47 -0.09 1.75 16 8 N -0.86 -23.45 13.96 55.50 0.77 -22.68 16 9 Si 0.87 20.53 25.06 -169.99 -4.26 16.27 16 10 H -0.27 -6.16 6.69 56.52 0.38 -5.78 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 13 C 0.49 11.34 7.58 -10.99 -0.08 11.26 16 14 O -0.60 -14.71 15.67 5.55 0.09 -14.62 16 15 C -0.13 -2.68 4.72 -27.88 -0.13 -2.81 16 16 C 0.13 2.36 5.01 -4.04 -0.02 2.34 16 17 N -0.57 -8.81 2.62 -120.93 -0.32 -9.12 16 18 C 0.70 10.33 8.64 -87.42 -0.76 9.58 16 19 O -0.54 -9.77 17.50 5.33 0.09 -9.67 16 20 N -0.72 -7.24 6.03 -53.62 -0.32 -7.57 16 21 C 0.11 1.10 1.04 -132.88 -0.14 0.96 16 22 C -0.12 -0.87 6.02 -25.65 -0.15 -1.03 16 23 C -0.12 -0.66 6.82 -25.44 -0.17 -0.83 16 24 C -0.12 -0.72 6.82 -25.44 -0.17 -0.89 16 25 C -0.12 -1.01 6.03 -25.65 -0.15 -1.16 16 26 C 0.53 7.49 7.02 -10.99 -0.08 7.41 16 27 O -0.46 -7.53 17.79 5.60 0.10 -7.43 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.07 1.56 3.65 -51.93 -0.19 1.37 16 34 H 0.06 1.44 7.62 -51.93 -0.40 1.05 16 35 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.09 1.85 7.67 -51.93 -0.40 1.45 16 37 H 0.09 1.91 8.10 -51.93 -0.42 1.48 16 38 H 0.10 1.75 7.98 -51.93 -0.41 1.34 16 39 H 0.10 1.82 7.83 -51.93 -0.41 1.41 16 40 H 0.44 3.26 8.96 -40.82 -0.37 2.90 16 41 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -31.68 388.82 -7.76 -39.44 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.62 Total: 6.07 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: -1.90 Total: 14.91 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.12 Total: -50.82 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: 0.28 Total: -31.73 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.26 Total: 16.27 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.68 -7.76 -39.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299108874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.149 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds