Wall clock time and date at job start Tue Mar 31 2020 19:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47363 * 2 1 4 4 N 1.46494 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.37094 * 120.00422 * 90.70564 * 4 3 2 6 6 H 1.08002 * 120.00500 * 164.09631 * 5 4 3 7 7 C 1.38955 * 119.99588 * 344.09705 * 5 4 3 8 8 N 1.31407 * 120.00279 * 357.04516 * 7 5 4 9 9 Si 1.86805 * 119.99922 * 177.04606 * 7 5 4 10 10 H 1.48504 * 109.47031 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47437 * 119.99612 * 9 7 5 12 12 H 1.48498 * 109.46894 * 240.00012 * 9 7 5 13 13 C 1.34782 * 119.99666 * 270.70442 * 4 3 2 14 14 O 1.21289 * 120.00248 * 3.53142 * 13 4 3 15 15 C 1.50702 * 119.99834 * 183.53719 * 13 4 3 16 16 H 1.09006 * 109.47131 * 327.36217 * 15 13 4 17 17 C 1.52997 * 109.47349 * 87.36320 * 15 13 4 18 18 N 1.46501 * 109.47030 * 207.36641 * 15 13 4 19 19 C 1.33928 * 124.20874 * 299.99945 * 18 15 13 20 20 O 1.21537 * 123.80391 * 0.02562 * 19 18 15 21 21 N 1.34815 * 112.39605 * 179.97438 * 19 18 15 22 22 C 1.46426 * 106.23012 * 359.75140 * 21 19 18 23 23 C 1.53445 * 111.06262 * 120.19408 * 22 21 19 24 24 C 1.55081 * 103.98242 * 99.12883 * 23 22 21 25 25 C 1.54962 * 102.85709 * 37.23404 * 24 23 22 26 26 C 1.53048 * 111.50799 * 240.03092 * 22 21 19 27 27 C 1.35049 * 124.20811 * 119.99691 * 18 15 13 28 28 O 1.21239 * 127.35524 * 359.97438 * 27 18 15 29 29 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47078 * 299.99975 * 1 2 3 31 31 H 1.09000 * 109.47300 * 60.00121 * 1 2 3 32 32 H 1.09003 * 109.46681 * 240.00153 * 2 1 3 33 33 H 1.08998 * 109.46783 * 120.00437 * 2 1 3 34 34 H 1.09004 * 109.47064 * 59.99625 * 3 2 1 35 35 H 1.09000 * 109.46813 * 300.00177 * 3 2 1 36 36 H 0.96994 * 120.00127 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.46724 * 65.15161 * 17 15 13 38 38 H 1.09001 * 109.46826 * 185.14693 * 17 15 13 39 39 H 1.08997 * 109.47106 * 305.14649 * 17 15 13 40 40 H 0.97004 * 126.88619 * 180.02562 * 21 19 18 41 41 H 1.08999 * 110.52440 * 217.75390 * 23 22 21 42 42 H 1.09005 * 110.52809 * 340.50209 * 23 22 21 43 43 H 1.09000 * 110.73889 * 278.89046 * 24 23 22 44 44 H 1.09002 * 110.73720 * 155.57827 * 24 23 22 45 45 H 1.08999 * 110.48116 * 203.83332 * 25 24 23 46 46 H 1.09000 * 110.48251 * 81.20253 * 25 24 23 47 47 H 1.09000 * 110.09730 * 357.04458 * 26 22 21 48 48 H 1.09006 * 110.09563 * 118.64461 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.4572 -1.1880 6 1 5.2391 1.7137 -1.2032 7 6 3.5347 1.1422 -2.3721 8 7 2.2735 0.7739 -2.3472 9 14 4.4464 1.2423 -3.9995 10 1 5.8449 1.6793 -3.7573 11 1 4.4501 -0.0935 -4.6479 12 1 3.7691 2.2215 -4.8869 13 6 4.1794 1.4279 1.1663 14 8 3.5751 1.3501 2.2150 15 6 5.6842 1.5083 1.1679 16 1 6.0756 1.0122 0.2797 17 6 6.1165 2.9760 1.1646 18 7 6.2072 0.8479 2.3665 19 6 5.9145 1.2196 3.6194 20 8 5.1802 2.1480 3.8952 21 7 6.5251 0.4471 4.5403 22 6 7.3004 -0.5451 3.7931 23 6 8.7947 -0.4423 4.1265 24 6 9.0256 -1.5711 5.1645 25 6 8.1056 -2.7067 4.6493 26 6 6.8531 -1.9711 4.1229 27 6 7.0445 -0.2115 2.3454 28 8 7.4904 -0.7774 1.3703 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.8162 0.5536 -3.1737 37 1 5.8038 3.4489 2.0954 38 1 7.2011 3.0350 1.0736 39 1 5.6528 3.4894 0.3224 40 1 6.4602 0.5294 5.5047 41 1 9.3978 -0.6137 3.2349 42 1 9.0230 0.5304 4.5624 43 1 8.7201 -1.2486 6.1598 44 1 10.0683 -1.8888 5.1637 45 1 7.8384 -3.3801 5.4636 46 1 8.5923 -3.2558 3.8432 47 1 6.0794 -1.9528 4.8904 48 1 6.4793 -2.4635 3.2251 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364088581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:18 Heat of formation + Delta-G solvation = -63.792770 kcal Electronic energy + Delta-G solvation = -31795.033547 eV Core-core repulsion = 27658.502072 eV Total energy + Delta-G solvation = -4136.531475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.38669 -38.97206 -38.21682 -37.56343 -35.42866 -35.10709 -33.88259 -32.18879 -31.52783 -30.25601 -29.13002 -28.12002 -25.92595 -24.89182 -23.82519 -23.13590 -21.39610 -21.09285 -20.25769 -19.91573 -19.02651 -17.79301 -17.21721 -16.38899 -16.22458 -15.93046 -15.57079 -15.04924 -14.79855 -14.56847 -14.30062 -14.05846 -13.95202 -13.80608 -13.50401 -13.35456 -12.83411 -12.60935 -12.39993 -12.17416 -12.05503 -11.86968 -11.74111 -11.41968 -11.40442 -11.36195 -11.28667 -11.21585 -10.94483 -10.86869 -10.61323 -10.46207 -10.28531 -10.14990 -10.11173 -9.78970 -9.63832 -9.52732 -9.18060 -8.74765 -8.16068 -7.66819 -6.26390 -3.95785 1.91206 2.51725 3.09187 3.20002 3.22528 3.33000 3.51652 3.87009 4.04236 4.06568 4.28438 4.29703 4.71430 4.84467 5.03530 5.05800 5.13113 5.18315 5.35178 5.45221 5.56193 5.58898 5.62597 5.70270 5.76603 5.79084 5.89785 5.94253 6.02136 6.05954 6.19736 6.24765 6.30425 6.38858 6.53149 6.59454 6.77418 6.97577 7.08493 7.11823 7.18309 7.28275 7.52107 7.54513 7.68971 7.79448 7.93485 8.44815 8.63113 9.04874 9.50185 9.90563 10.61535 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.004029 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.744863 B = 6947.146204 C = 7471.491692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 C 0.147 3.853 4 N -0.439 5.439 5 C -0.332 4.332 6 H 0.097 0.903 7 C 0.034 3.966 8 N -0.861 5.861 9 Si 0.924 3.076 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.446 3.554 14 O -0.577 6.577 15 C 0.138 3.862 16 H 0.124 0.876 17 C -0.154 4.154 18 N -0.556 5.556 19 C 0.704 3.296 20 O -0.505 6.505 21 N -0.728 5.728 22 C 0.120 3.880 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.119 4.119 27 C 0.531 3.469 28 O -0.470 6.470 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.023 0.977 34 H 0.032 0.968 35 H 0.102 0.898 36 H 0.266 0.734 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.433 0.567 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.062 -3.947 9.872 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.024 3.976 4 N -0.157 5.157 5 C -0.459 4.459 6 H 0.115 0.885 7 C -0.170 4.170 8 N -0.501 5.501 9 Si 0.751 3.249 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.206 1.206 13 C 0.232 3.768 14 O -0.461 6.461 15 C 0.033 3.967 16 H 0.141 0.859 17 C -0.212 4.212 18 N -0.302 5.302 19 C 0.405 3.595 20 O -0.374 6.374 21 N -0.394 5.394 22 C 0.028 3.972 23 C -0.158 4.158 24 C -0.158 4.158 25 C -0.159 4.159 26 C -0.158 4.158 27 C 0.318 3.682 28 O -0.340 6.340 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.277 0.723 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.359 -3.740 9.709 14.682 hybrid contribution 0.239 -0.037 -0.609 0.655 sum 10.598 -3.777 9.100 14.470 Atomic orbital electron populations 1.21560 0.97800 0.99479 1.00277 1.21906 0.93579 0.98541 1.01467 1.21308 0.79219 0.96965 1.00089 1.43766 1.05890 1.61934 1.04151 1.19754 0.95592 1.46581 0.84001 0.88491 1.25282 0.96110 0.95846 0.99719 1.70170 1.09492 1.43100 1.27310 0.85893 0.79449 0.78030 0.81525 1.19320 1.20619 1.20625 1.19857 0.88134 0.84139 0.84710 1.90629 1.69051 1.55341 1.31073 1.21171 0.95137 0.95096 0.85279 0.85866 1.21997 1.00787 0.93896 1.04565 1.46358 1.44362 1.31307 1.08187 1.15882 0.80072 0.82902 0.80685 1.90997 1.36078 1.29346 1.80997 1.45528 1.51885 1.33659 1.08366 1.21397 0.94500 0.91774 0.89527 1.22584 0.91837 1.00574 1.00822 1.22545 1.00158 0.94868 0.98266 1.22426 0.95071 0.97576 1.00856 1.22324 0.99102 0.91466 1.02894 1.20565 0.77601 0.79108 0.90956 1.90775 1.51274 1.53280 1.38657 0.94595 0.94710 0.92873 0.88136 0.95842 0.95009 0.88031 0.92273 0.90670 0.92481 0.89789 0.72261 0.89373 0.89882 0.91081 0.90712 0.90897 0.90760 0.89658 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.91 37.16 0.37 -2.30 16 2 C -0.12 -2.77 5.59 -26.73 -0.15 -2.92 16 3 C 0.15 3.67 4.59 -4.05 -0.02 3.66 16 4 N -0.44 -11.19 2.62 -114.81 -0.30 -11.49 16 5 C -0.33 -8.20 9.08 -14.93 -0.14 -8.34 16 6 H 0.10 2.26 5.92 -52.49 -0.31 1.95 16 7 C 0.03 0.82 5.31 -17.47 -0.09 0.73 16 8 N -0.86 -21.19 7.40 55.50 0.41 -20.78 16 9 Si 0.92 19.09 29.55 -169.99 -5.02 14.07 16 10 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 13 C 0.45 11.19 6.77 -10.98 -0.07 11.11 16 14 O -0.58 -15.98 13.53 -16.98 -0.23 -16.21 16 15 C 0.14 2.92 2.37 -69.08 -0.16 2.75 16 16 H 0.12 2.64 5.94 -51.93 -0.31 2.34 16 17 C -0.15 -2.84 9.15 37.16 0.34 -2.50 16 18 N -0.56 -10.74 2.48 -114.96 -0.29 -11.02 16 19 C 0.70 13.29 7.47 -87.64 -0.66 12.64 16 20 O -0.50 -11.42 14.24 -17.20 -0.24 -11.67 16 21 N -0.73 -9.82 5.79 -53.51 -0.31 -10.13 16 22 C 0.12 1.51 1.23 -132.73 -0.16 1.35 16 23 C -0.12 -1.13 6.12 -25.40 -0.16 -1.29 16 24 C -0.12 -0.86 6.92 -24.59 -0.17 -1.03 16 25 C -0.12 -0.98 6.85 -24.91 -0.17 -1.15 16 26 C -0.12 -1.32 6.30 -25.92 -0.16 -1.48 16 27 C 0.53 9.12 6.66 -10.84 -0.07 9.05 16 28 O -0.47 -8.93 17.50 5.59 0.10 -8.83 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 2.57 5.87 -51.93 -0.31 2.26 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.82 7.50 -51.93 -0.39 0.43 16 35 H 0.10 2.61 6.04 -51.93 -0.31 2.29 16 36 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 37 H 0.07 1.48 6.56 -51.93 -0.34 1.14 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.54 8.06 -51.93 -0.42 1.12 16 40 H 0.43 4.54 8.96 -40.82 -0.37 4.18 16 41 H 0.09 0.88 7.87 -51.93 -0.41 0.47 16 42 H 0.08 0.72 8.04 -51.93 -0.42 0.31 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 48 H 0.08 1.05 7.72 -51.93 -0.40 0.65 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -31.50 376.82 -9.02 -40.52 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.33 Total: 9.58 kcal Atomic # 6 Polarization: 21.76 SS G_CDS: -1.48 Total: 20.28 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.49 Total: -53.42 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.38 Total: -36.71 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.50 -9.02 -40.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364088581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.277 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds