Wall clock time and date at job start Tue Mar 31 2020 19:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47363 * 2 1 4 4 N 1.46494 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.37094 * 120.00422 * 90.70564 * 4 3 2 6 6 H 1.08002 * 120.00500 * 164.09631 * 5 4 3 7 7 C 1.38955 * 119.99588 * 344.09705 * 5 4 3 8 8 N 1.31407 * 120.00279 * 357.04516 * 7 5 4 9 9 Si 1.86805 * 119.99922 * 177.04606 * 7 5 4 10 10 H 1.48504 * 109.47031 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47437 * 119.99612 * 9 7 5 12 12 H 1.48498 * 109.46894 * 240.00012 * 9 7 5 13 13 C 1.34782 * 119.99666 * 270.70442 * 4 3 2 14 14 O 1.21289 * 120.00248 * 3.53142 * 13 4 3 15 15 C 1.50702 * 119.99834 * 183.53719 * 13 4 3 16 16 H 1.09006 * 109.47131 * 327.36217 * 15 13 4 17 17 C 1.52997 * 109.47349 * 87.36320 * 15 13 4 18 18 N 1.46501 * 109.47030 * 207.36641 * 15 13 4 19 19 C 1.33928 * 124.20874 * 299.99945 * 18 15 13 20 20 O 1.21537 * 123.80391 * 0.02562 * 19 18 15 21 21 N 1.34815 * 112.39605 * 179.97438 * 19 18 15 22 22 C 1.46426 * 106.23012 * 359.75140 * 21 19 18 23 23 C 1.53445 * 111.06262 * 120.19408 * 22 21 19 24 24 C 1.55081 * 103.98242 * 99.12883 * 23 22 21 25 25 C 1.54962 * 102.85709 * 37.23404 * 24 23 22 26 26 C 1.53048 * 111.50799 * 240.03092 * 22 21 19 27 27 C 1.35049 * 124.20811 * 119.99691 * 18 15 13 28 28 O 1.21239 * 127.35524 * 359.97438 * 27 18 15 29 29 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47078 * 299.99975 * 1 2 3 31 31 H 1.09000 * 109.47300 * 60.00121 * 1 2 3 32 32 H 1.09003 * 109.46681 * 240.00153 * 2 1 3 33 33 H 1.08998 * 109.46783 * 120.00437 * 2 1 3 34 34 H 1.09004 * 109.47064 * 59.99625 * 3 2 1 35 35 H 1.09000 * 109.46813 * 300.00177 * 3 2 1 36 36 H 0.96994 * 120.00127 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.46724 * 65.15161 * 17 15 13 38 38 H 1.09001 * 109.46826 * 185.14693 * 17 15 13 39 39 H 1.08997 * 109.47106 * 305.14649 * 17 15 13 40 40 H 0.97004 * 126.88619 * 180.02562 * 21 19 18 41 41 H 1.08999 * 110.52440 * 217.75390 * 23 22 21 42 42 H 1.09005 * 110.52809 * 340.50209 * 23 22 21 43 43 H 1.09000 * 110.73889 * 278.89046 * 24 23 22 44 44 H 1.09002 * 110.73720 * 155.57827 * 24 23 22 45 45 H 1.08999 * 110.48116 * 203.83332 * 25 24 23 46 46 H 1.09000 * 110.48251 * 81.20253 * 25 24 23 47 47 H 1.09000 * 110.09730 * 357.04458 * 26 22 21 48 48 H 1.09006 * 110.09563 * 118.64461 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.4572 -1.1880 6 1 5.2391 1.7137 -1.2032 7 6 3.5347 1.1422 -2.3721 8 7 2.2735 0.7739 -2.3472 9 14 4.4464 1.2423 -3.9995 10 1 5.8449 1.6793 -3.7573 11 1 4.4501 -0.0935 -4.6479 12 1 3.7691 2.2215 -4.8869 13 6 4.1794 1.4279 1.1663 14 8 3.5751 1.3501 2.2150 15 6 5.6842 1.5083 1.1679 16 1 6.0756 1.0122 0.2797 17 6 6.1165 2.9760 1.1646 18 7 6.2072 0.8479 2.3665 19 6 5.9145 1.2196 3.6194 20 8 5.1802 2.1480 3.8952 21 7 6.5251 0.4471 4.5403 22 6 7.3004 -0.5451 3.7931 23 6 8.7947 -0.4423 4.1265 24 6 9.0256 -1.5711 5.1645 25 6 8.1056 -2.7067 4.6493 26 6 6.8531 -1.9711 4.1229 27 6 7.0445 -0.2115 2.3454 28 8 7.4904 -0.7774 1.3703 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.8162 0.5536 -3.1737 37 1 5.8038 3.4489 2.0954 38 1 7.2011 3.0350 1.0736 39 1 5.6528 3.4894 0.3224 40 1 6.4602 0.5294 5.5047 41 1 9.3978 -0.6137 3.2349 42 1 9.0230 0.5304 4.5624 43 1 8.7201 -1.2486 6.1598 44 1 10.0683 -1.8888 5.1637 45 1 7.8384 -3.3801 5.4636 46 1 8.5923 -3.2558 3.8432 47 1 6.0794 -1.9528 4.8904 48 1 6.4793 -2.4635 3.2251 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364088581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:17 Heat of formation + Delta-G solvation = -82.793111 kcal Electronic energy + Delta-G solvation = -31795.857463 eV Core-core repulsion = 27658.502072 eV Total energy + Delta-G solvation = -4137.355391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.73322 -40.71840 -39.71722 -38.75736 -37.23781 -36.69696 -35.28173 -33.99552 -33.42608 -31.79923 -29.90327 -29.10475 -27.77581 -26.72348 -25.41601 -24.47286 -22.99455 -21.93003 -21.78494 -21.21041 -20.86634 -19.26712 -18.86476 -18.07386 -17.45294 -17.23673 -16.93001 -16.67152 -16.10521 -16.09195 -15.76516 -15.64510 -15.55203 -15.34910 -15.28295 -14.61358 -14.38441 -14.21756 -13.65193 -13.60840 -13.38456 -13.24590 -13.10905 -13.02263 -12.97911 -12.70842 -12.52967 -12.42835 -12.27180 -12.12371 -12.08907 -12.02638 -11.93878 -11.59282 -11.53876 -11.46502 -11.34434 -11.05289 -10.71532 -10.38350 -10.06807 -9.64467 -8.15123 -5.91510 0.54395 1.08530 1.43512 1.50060 1.61254 1.95422 2.07033 2.17114 2.30483 2.86659 2.90137 3.13773 3.40439 3.45241 3.89710 3.97786 4.07317 4.13486 4.23621 4.27005 4.36706 4.41054 4.41666 4.48450 4.52858 4.69172 4.69610 4.72864 4.79873 4.83258 4.89170 4.99387 5.02724 5.09902 5.11643 5.21228 5.23269 5.25761 5.31115 5.37578 5.45419 5.58319 5.82975 5.91194 5.93945 6.14474 6.31970 6.50614 7.11019 7.24129 7.54747 7.95902 8.73692 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.004029 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.744863 B = 6947.146204 C = 7471.491692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.151 3.849 4 N -0.448 5.448 5 C -0.355 4.355 6 H 0.107 0.893 7 C -0.003 4.003 8 N -0.877 5.877 9 Si 0.991 3.009 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.431 3.569 14 O -0.612 6.612 15 C 0.142 3.858 16 H 0.118 0.882 17 C -0.142 4.142 18 N -0.567 5.567 19 C 0.698 3.302 20 O -0.550 6.550 21 N -0.702 5.702 22 C 0.126 3.874 23 C -0.115 4.115 24 C -0.110 4.110 25 C -0.115 4.115 26 C -0.122 4.122 27 C 0.522 3.478 28 O -0.494 6.494 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.085 0.915 33 H -0.002 1.002 34 H 0.015 0.985 35 H 0.096 0.904 36 H 0.270 0.730 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.450 0.550 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.066 -4.855 10.402 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.028 3.972 4 N -0.166 5.166 5 C -0.482 4.482 6 H 0.125 0.875 7 C -0.205 4.205 8 N -0.516 5.516 9 Si 0.815 3.185 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.202 1.202 13 C 0.218 3.782 14 O -0.498 6.498 15 C 0.037 3.963 16 H 0.135 0.865 17 C -0.200 4.200 18 N -0.313 5.313 19 C 0.398 3.602 20 O -0.423 6.423 21 N -0.369 5.369 22 C 0.035 3.965 23 C -0.154 4.154 24 C -0.148 4.148 25 C -0.153 4.153 26 C -0.160 4.160 27 C 0.310 3.690 28 O -0.365 6.365 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.017 0.983 34 H 0.033 0.967 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.297 0.703 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.091 0.909 47 H 0.111 0.889 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.394 -4.681 10.272 16.764 hybrid contribution -0.442 0.199 -0.809 0.943 sum 11.952 -4.482 9.463 15.890 Atomic orbital electron populations 1.21467 0.94761 1.01068 1.00821 1.21755 0.96238 0.97081 0.99268 1.21241 0.79713 0.97512 0.98717 1.44015 1.06098 1.61595 1.04862 1.20096 0.96268 1.47813 0.84036 0.87512 1.26092 0.96904 0.95021 1.02474 1.70251 1.10444 1.42613 1.28281 0.84882 0.78688 0.77697 0.77218 1.18417 1.20830 1.20178 1.20545 0.89938 0.83617 0.84062 1.90587 1.70246 1.56909 1.32097 1.20988 0.92288 0.96852 0.86210 0.86480 1.21913 1.02691 0.91821 1.03606 1.46482 1.44798 1.32034 1.07972 1.16093 0.79966 0.82941 0.81155 1.90962 1.38248 1.31470 1.81612 1.45394 1.50531 1.32398 1.08578 1.21639 0.96746 0.92157 0.85968 1.22647 0.88535 1.02534 1.01684 1.22569 1.01160 0.92995 0.98029 1.22437 0.93449 0.97951 1.01440 1.22399 1.01100 0.90297 1.02239 1.21393 0.76638 0.78058 0.92884 1.90747 1.52054 1.53661 1.40066 0.92485 0.94013 0.92405 0.89711 0.98285 0.96685 0.88656 0.91921 0.92161 0.89290 0.90013 0.70277 0.89750 0.88656 0.89265 0.88643 0.88720 0.90943 0.88877 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.91 71.98 0.71 -4.20 16 2 C -0.11 -5.14 5.59 30.59 0.17 -4.97 16 3 C 0.15 7.86 4.59 86.38 0.40 8.25 16 4 N -0.45 -23.70 2.62 -635.54 -1.67 -25.37 16 5 C -0.36 -17.89 9.08 84.04 0.76 -17.13 16 6 H 0.11 5.04 5.92 -2.91 -0.02 5.02 16 7 C 0.00 -0.14 5.31 84.93 0.45 0.31 16 8 N -0.88 -43.43 7.40 21.66 0.16 -43.27 16 9 Si 0.99 38.77 29.55 68.60 2.03 40.79 16 10 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 11 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 12 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 13 C 0.43 22.58 6.77 87.66 0.59 23.17 16 14 O -0.61 -35.57 13.53 18.49 0.25 -35.32 16 15 C 0.14 6.19 2.37 44.24 0.10 6.30 16 16 H 0.12 5.18 5.94 -2.38 -0.01 5.16 16 17 C -0.14 -5.31 9.15 71.98 0.66 -4.65 16 18 N -0.57 -22.34 2.48 -754.64 -1.87 -24.21 16 19 C 0.70 26.73 7.47 179.31 1.34 28.07 16 20 O -0.55 -25.69 14.24 17.71 0.25 -25.43 16 21 N -0.70 -18.22 5.79 -441.45 -2.56 -20.78 16 22 C 0.13 3.02 1.23 3.05 0.00 3.03 16 23 C -0.12 -1.87 6.12 31.46 0.19 -1.68 16 24 C -0.11 -1.11 6.92 31.98 0.22 -0.89 16 25 C -0.12 -1.49 6.85 31.77 0.22 -1.28 16 26 C -0.12 -2.52 6.30 31.12 0.20 -2.32 16 27 C 0.52 18.00 6.66 87.63 0.58 18.58 16 28 O -0.49 -19.00 17.50 -2.90 -0.05 -19.05 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.08 4.44 5.87 -2.39 -0.01 4.43 16 33 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.01 0.81 7.50 -2.38 -0.02 0.79 16 35 H 0.10 5.05 6.04 -2.39 -0.01 5.04 16 36 H 0.27 12.61 8.31 -92.71 -0.77 11.84 16 37 H 0.06 2.44 6.56 -2.39 -0.02 2.42 16 38 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.08 3.04 8.06 -2.39 -0.02 3.02 16 40 H 0.45 8.61 8.96 -92.71 -0.83 7.78 16 41 H 0.08 1.49 7.87 -2.39 -0.02 1.48 16 42 H 0.09 1.35 8.04 -2.38 -0.02 1.33 16 43 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.09 1.78 7.96 -2.39 -0.02 1.76 16 48 H 0.06 1.50 7.72 -2.38 -0.02 1.48 16 Total: -1.00 -71.71 376.82 3.31 -68.40 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.16 Total: 33.63 kcal Atomic # 6 Polarization: 43.99 SS G_CDS: 6.61 Total: 50.59 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -5.94 Total: -113.62 kcal Atomic # 8 Polarization: -80.25 SS G_CDS: 0.45 Total: -79.80 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.79 kcal Total: -71.71 3.31 -68.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364088581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.389 kcal (2) G-P(sol) polarization free energy of solvation -71.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds