Wall clock time and date at job start Tue Mar 31 2020 19:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46924 * 2 1 4 4 N 1.46496 * 109.47273 * 180.02562 * 3 2 1 5 5 C 1.34781 * 120.00148 * 89.99918 * 4 3 2 6 6 O 1.21585 * 120.00071 * 180.02562 * 5 4 3 7 7 N 1.34769 * 119.99518 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99686 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.47068 * 324.99893 * 8 7 5 10 10 C 1.50703 * 109.47064 * 204.99925 * 8 7 5 11 11 H 1.07996 * 119.99751 * 359.97438 * 10 8 7 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 8 7 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47171 * 89.99544 * 14 12 10 16 16 H 1.48500 * 109.46632 * 209.99795 * 14 12 10 17 17 H 1.48494 * 109.47053 * 329.99231 * 14 12 10 18 18 C 1.53002 * 109.47411 * 84.99974 * 8 7 5 19 19 F 1.39889 * 109.47380 * 180.02562 * 18 8 7 20 20 F 1.39906 * 109.46680 * 300.00093 * 18 8 7 21 21 F 1.39895 * 109.47052 * 59.99484 * 18 8 7 22 22 C 1.46501 * 119.99945 * 270.00224 * 4 3 2 23 23 H 1.08997 * 110.27679 * 0.69972 * 22 4 3 24 24 C 1.54595 * 110.31095 * 238.60779 * 22 4 3 25 25 C 1.55104 * 102.84863 * 219.18780 * 24 22 4 26 26 N 1.48538 * 103.28180 * 37.30543 * 25 24 22 27 27 C 1.46898 * 110.99461 * 200.33631 * 26 25 24 28 28 C 1.47905 * 105.82036 * 320.84561 * 26 25 24 29 29 H 1.09003 * 109.47463 * 59.99770 * 1 2 3 30 30 H 1.08999 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46926 * 299.99581 * 1 2 3 32 32 H 1.08998 * 109.47078 * 240.00030 * 2 1 3 33 33 H 1.09000 * 109.47220 * 119.99780 * 2 1 3 34 34 H 1.09005 * 109.46977 * 60.00450 * 3 2 1 35 35 H 1.09003 * 109.47239 * 300.00367 * 3 2 1 36 36 H 0.97000 * 120.00680 * 359.97438 * 7 5 4 37 37 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 38 38 H 1.09005 * 110.72148 * 337.48505 * 24 22 4 39 39 H 1.08999 * 110.72439 * 100.76455 * 24 22 4 40 40 H 1.08993 * 110.59148 * 278.87506 * 25 24 22 41 41 H 1.08998 * 110.82814 * 155.85191 * 25 24 22 42 42 H 1.09001 * 109.46832 * 177.39597 * 27 26 25 43 43 H 1.09001 * 109.47067 * 297.38997 * 27 26 25 44 44 H 1.08995 * 109.47718 * 57.39533 * 27 26 25 45 45 H 1.08998 * 109.91677 * 265.98124 * 28 26 25 46 46 H 1.09000 * 110.08086 * 144.77394 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1784 1.4428 -1.1681 6 8 5.3942 1.4424 -1.1686 7 7 3.5040 1.4434 -2.3349 8 6 4.2359 1.4431 -3.6040 9 1 5.1471 2.0319 -3.4981 10 6 3.3719 2.0443 -4.6825 11 1 2.3769 2.3915 -4.4462 12 6 3.8512 2.1501 -5.9709 13 7 5.0627 1.7269 -6.2586 14 14 2.7804 2.8960 -7.3075 15 1 3.0110 4.3618 -7.3661 16 1 3.1276 2.2875 -8.6168 17 1 1.3515 2.6315 -7.0021 18 6 4.5987 0.0059 -3.9832 19 9 5.2981 0.0056 -5.1947 20 9 5.4008 -0.5522 -2.9820 21 9 3.4293 -0.7498 -4.1191 22 6 4.2380 1.4424 1.2678 23 1 3.5418 1.4297 2.1064 24 6 5.1603 2.6801 1.3548 25 6 6.4388 2.1111 2.0237 26 7 6.5614 0.7560 1.4279 27 6 7.4043 -0.1112 2.2618 28 6 5.1826 0.2283 1.3390 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8900 36 1 2.5340 1.4434 -2.3346 37 1 5.3998 1.8010 -7.1651 38 1 5.3844 3.0647 0.3598 39 1 4.7097 3.4540 1.9762 40 1 6.3097 2.0461 3.1040 41 1 7.3087 2.7199 1.7774 42 1 7.4397 -1.1102 1.8271 43 1 8.4126 0.2999 2.3102 44 1 6.9860 -0.1670 3.2668 45 1 4.9554 -0.3676 2.2230 46 1 5.0722 -0.3811 0.4421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932898826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:59 Heat of formation + Delta-G solvation = -146.990959 kcal Electronic energy + Delta-G solvation = -32675.743959 eV Core-core repulsion = 27993.748000 eV Total energy + Delta-G solvation = -4681.995959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.22575 -45.87478 -45.50201 -40.19073 -37.97880 -35.83523 -34.58423 -32.92711 -32.42977 -30.84080 -28.73212 -27.75356 -25.93033 -25.11448 -24.45390 -22.20380 -21.53103 -21.04047 -20.68716 -19.21397 -17.68848 -16.82842 -16.76388 -16.50145 -16.33177 -15.55331 -15.41826 -14.94863 -14.81634 -14.53546 -14.41971 -13.95734 -13.83783 -13.21862 -13.15199 -12.81505 -12.73423 -12.47267 -12.38835 -12.27441 -12.20408 -12.11823 -12.02449 -11.89685 -11.77830 -11.69473 -11.42754 -11.31435 -11.22000 -11.12559 -11.02300 -10.82757 -10.79816 -10.64507 -10.62572 -10.32506 -9.57408 -9.10118 -8.65303 -8.32510 -8.10652 -7.98349 -6.17376 -4.40753 3.09091 3.21492 3.28073 3.31044 3.90084 4.20320 4.21921 4.47819 4.71038 4.79052 4.85029 4.93245 5.00075 5.07726 5.14880 5.25688 5.33496 5.35937 5.41086 5.47724 5.59573 5.64113 5.67026 5.77299 5.91347 5.93727 5.96674 5.97624 5.99734 6.02726 6.11335 6.20424 6.30351 6.35116 6.44802 6.83472 7.04022 7.14199 7.25379 7.35272 7.45723 7.68257 7.73622 8.56288 8.74519 9.23538 9.41109 10.74079 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.004514 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.881119 B = 6201.705346 C = 6996.698020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.112 3.888 4 N -0.632 5.632 5 C 0.694 3.306 6 O -0.550 6.550 7 N -0.729 5.729 8 C 0.264 3.736 9 H 0.084 0.916 10 C -0.550 4.550 11 H 0.075 0.925 12 C 0.065 3.935 13 N -0.839 5.839 14 Si 0.913 3.087 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.416 3.584 19 F -0.139 7.139 20 F -0.215 7.215 21 F -0.212 7.212 22 C 0.162 3.838 23 H 0.087 0.913 24 C -0.134 4.134 25 C 0.042 3.958 26 N -0.497 5.497 27 C 0.018 3.982 28 C 0.038 3.962 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.391 0.609 37 H 0.267 0.733 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.035 0.965 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.019 0.981 45 H 0.036 0.964 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 -0.807 15.696 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C -0.012 4.012 4 N -0.370 5.370 5 C 0.395 3.605 6 O -0.424 6.424 7 N -0.384 5.384 8 C 0.158 3.842 9 H 0.102 0.898 10 C -0.587 4.587 11 H 0.093 0.907 12 C -0.144 4.144 13 N -0.472 5.472 14 Si 0.740 3.260 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.196 1.196 18 C 0.360 3.640 19 F -0.120 7.120 20 F -0.197 7.197 21 F -0.194 7.194 22 C 0.057 3.943 23 H 0.105 0.895 24 C -0.172 4.172 25 C -0.086 4.086 26 N -0.220 5.220 27 C -0.131 4.131 28 C -0.091 4.091 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.226 0.774 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.038 0.962 45 H 0.054 0.946 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.882 -0.841 14.976 15.494 hybrid contribution -1.354 -0.199 0.038 1.369 sum -5.235 -1.039 15.015 15.935 Atomic orbital electron populations 1.21700 0.95307 1.01854 1.01810 1.22018 0.95931 0.97577 1.02986 1.21554 0.80321 0.96564 1.02768 1.47259 1.05278 1.79874 1.04575 1.16054 0.85821 0.78405 0.80200 1.91027 1.10468 1.55384 1.85567 1.45471 1.09633 1.78634 1.04631 1.19533 0.96495 0.87434 0.80788 0.89838 1.20864 1.01655 1.43656 0.92567 0.90737 1.25065 0.95670 0.94757 0.98860 1.70415 1.15592 1.40296 1.20926 0.86251 0.80285 0.79140 0.80355 1.20256 1.20855 1.19604 1.23170 0.73645 0.91712 0.75495 1.93391 1.79071 1.96166 1.43399 1.93083 1.75349 1.88315 1.62918 1.92973 1.50702 1.79742 1.96002 1.21583 0.92981 0.94966 0.84770 0.89540 1.22931 0.94591 0.96679 1.03040 1.23150 0.98730 0.91302 0.95416 1.64679 1.09854 1.01641 1.45861 1.22517 0.98128 0.98187 0.94286 1.23161 0.88223 0.96688 1.01064 0.92284 0.92633 0.92912 0.91178 0.91945 0.90802 0.90512 0.77422 0.92215 0.88566 0.91654 0.94674 0.90216 0.91571 0.91514 0.96220 0.94601 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -1.00 16 2 C -0.15 -1.64 6.26 -26.73 -0.17 -1.81 16 3 C 0.11 1.30 5.15 -4.04 -0.02 1.28 16 4 N -0.63 -9.49 2.46 -170.25 -0.42 -9.91 16 5 C 0.69 13.81 6.67 -86.92 -0.58 13.23 16 6 O -0.55 -12.85 11.75 5.29 0.06 -12.79 16 7 N -0.73 -15.13 4.85 -59.81 -0.29 -15.42 16 8 C 0.26 6.63 2.21 -69.08 -0.15 6.48 16 9 H 0.08 2.37 7.58 -51.93 -0.39 1.98 16 10 C -0.55 -14.12 8.47 -34.44 -0.29 -14.41 16 11 H 0.07 1.81 7.74 -52.49 -0.41 1.40 16 12 C 0.07 1.71 5.20 -17.82 -0.09 1.61 16 13 N -0.84 -23.27 9.50 55.43 0.53 -22.74 16 14 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 C 0.42 10.87 2.81 37.16 0.10 10.97 16 19 F -0.14 -3.93 12.91 2.25 0.03 -3.90 16 20 F -0.21 -5.63 15.68 2.25 0.04 -5.59 16 21 F -0.21 -5.33 16.94 2.25 0.04 -5.29 16 22 C 0.16 2.17 3.45 -66.57 -0.23 1.94 16 23 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 24 C -0.13 -1.82 6.28 -24.78 -0.16 -1.97 16 25 C 0.04 0.55 6.56 -1.80 -0.01 0.54 16 26 N -0.50 -7.65 5.16 -238.60 -1.23 -8.88 16 27 C 0.02 0.22 9.40 60.06 0.56 0.78 16 28 C 0.04 0.56 5.51 -2.75 -0.02 0.54 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 35 H 0.08 0.92 6.36 -51.93 -0.33 0.59 16 36 H 0.39 7.20 6.27 -40.82 -0.26 6.94 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.10 1.68 6.29 -51.93 -0.33 1.36 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.38 7.96 -51.93 -0.41 -0.03 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.02 0.21 8.00 -51.93 -0.42 -0.21 16 45 H 0.04 0.45 7.73 -51.93 -0.40 0.05 16 46 H 0.09 1.61 7.05 -51.93 -0.37 1.25 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -30.69 370.35 -8.44 -39.12 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.07 Total: 6.44 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: -0.68 Total: 18.19 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -1.41 Total: -56.96 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.06 Total: -12.79 kcal Atomic # 9 Polarization: -14.89 SS G_CDS: 0.10 Total: -14.79 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.69 -8.44 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.867 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds