Wall clock time and date at job start Tue Mar 31 2020 19:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46924 * 2 1 4 4 N 1.46496 * 109.47273 * 180.02562 * 3 2 1 5 5 C 1.34781 * 120.00148 * 89.99918 * 4 3 2 6 6 O 1.21585 * 120.00071 * 180.02562 * 5 4 3 7 7 N 1.34769 * 119.99518 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99686 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.47068 * 324.99893 * 8 7 5 10 10 C 1.50703 * 109.47064 * 204.99925 * 8 7 5 11 11 H 1.07996 * 119.99751 * 359.97438 * 10 8 7 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 8 7 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47171 * 89.99544 * 14 12 10 16 16 H 1.48500 * 109.46632 * 209.99795 * 14 12 10 17 17 H 1.48494 * 109.47053 * 329.99231 * 14 12 10 18 18 C 1.53002 * 109.47411 * 84.99974 * 8 7 5 19 19 F 1.39889 * 109.47380 * 180.02562 * 18 8 7 20 20 F 1.39906 * 109.46680 * 300.00093 * 18 8 7 21 21 F 1.39895 * 109.47052 * 59.99484 * 18 8 7 22 22 C 1.46501 * 119.99945 * 270.00224 * 4 3 2 23 23 H 1.08997 * 110.27679 * 0.69972 * 22 4 3 24 24 C 1.54595 * 110.31095 * 238.60779 * 22 4 3 25 25 C 1.55104 * 102.84863 * 219.18780 * 24 22 4 26 26 N 1.48538 * 103.28180 * 37.30543 * 25 24 22 27 27 C 1.46898 * 110.99461 * 200.33631 * 26 25 24 28 28 C 1.47905 * 105.82036 * 320.84561 * 26 25 24 29 29 H 1.09003 * 109.47463 * 59.99770 * 1 2 3 30 30 H 1.08999 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46926 * 299.99581 * 1 2 3 32 32 H 1.08998 * 109.47078 * 240.00030 * 2 1 3 33 33 H 1.09000 * 109.47220 * 119.99780 * 2 1 3 34 34 H 1.09005 * 109.46977 * 60.00450 * 3 2 1 35 35 H 1.09003 * 109.47239 * 300.00367 * 3 2 1 36 36 H 0.97000 * 120.00680 * 359.97438 * 7 5 4 37 37 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 38 38 H 1.09005 * 110.72148 * 337.48505 * 24 22 4 39 39 H 1.08999 * 110.72439 * 100.76455 * 24 22 4 40 40 H 1.08993 * 110.59148 * 278.87506 * 25 24 22 41 41 H 1.08998 * 110.82814 * 155.85191 * 25 24 22 42 42 H 1.09001 * 109.46832 * 177.39597 * 27 26 25 43 43 H 1.09001 * 109.47067 * 297.38997 * 27 26 25 44 44 H 1.08995 * 109.47718 * 57.39533 * 27 26 25 45 45 H 1.08998 * 109.91677 * 265.98124 * 28 26 25 46 46 H 1.09000 * 110.08086 * 144.77394 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1784 1.4428 -1.1681 6 8 5.3942 1.4424 -1.1686 7 7 3.5040 1.4434 -2.3349 8 6 4.2359 1.4431 -3.6040 9 1 5.1471 2.0319 -3.4981 10 6 3.3719 2.0443 -4.6825 11 1 2.3769 2.3915 -4.4462 12 6 3.8512 2.1501 -5.9709 13 7 5.0627 1.7269 -6.2586 14 14 2.7804 2.8960 -7.3075 15 1 3.0110 4.3618 -7.3661 16 1 3.1276 2.2875 -8.6168 17 1 1.3515 2.6315 -7.0021 18 6 4.5987 0.0059 -3.9832 19 9 5.2981 0.0056 -5.1947 20 9 5.4008 -0.5522 -2.9820 21 9 3.4293 -0.7498 -4.1191 22 6 4.2380 1.4424 1.2678 23 1 3.5418 1.4297 2.1064 24 6 5.1603 2.6801 1.3548 25 6 6.4388 2.1111 2.0237 26 7 6.5614 0.7560 1.4279 27 6 7.4043 -0.1112 2.2618 28 6 5.1826 0.2283 1.3390 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8900 36 1 2.5340 1.4434 -2.3346 37 1 5.3998 1.8010 -7.1651 38 1 5.3844 3.0647 0.3598 39 1 4.7097 3.4540 1.9762 40 1 6.3097 2.0461 3.1040 41 1 7.3087 2.7199 1.7774 42 1 7.4397 -1.1102 1.8271 43 1 8.4126 0.2999 2.3102 44 1 6.9860 -0.1670 3.2668 45 1 4.9554 -0.3676 2.2230 46 1 5.0722 -0.3811 0.4421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932898826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:58 Heat of formation + Delta-G solvation = -167.356515 kcal Electronic energy + Delta-G solvation = -32676.627076 eV Core-core repulsion = 27993.748000 eV Total energy + Delta-G solvation = -4682.879076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.36671 -47.99872 -47.68656 -41.52635 -39.24853 -37.05489 -36.36987 -34.40686 -33.86884 -31.99993 -30.23275 -29.15351 -26.90464 -26.58332 -26.17318 -23.76091 -22.63415 -22.26232 -21.97938 -20.85051 -19.21442 -18.82075 -18.63316 -18.46034 -17.88502 -17.16376 -16.69443 -16.56928 -16.02383 -15.99095 -15.50339 -15.26171 -15.03186 -14.91076 -14.86920 -14.44365 -14.40173 -14.27662 -14.21709 -13.99000 -13.87232 -13.83143 -13.33341 -13.08846 -13.06098 -12.98853 -12.86698 -12.62895 -12.57959 -12.41924 -12.36027 -12.18532 -12.11766 -12.02495 -11.81911 -11.57285 -11.51701 -10.69887 -10.65062 -9.95013 -9.40422 -9.13703 -8.18176 -6.48994 1.46610 1.48334 1.59210 1.75743 2.29655 2.38783 2.63379 2.97479 3.05782 3.19320 3.74450 3.81015 3.85078 3.92478 3.97167 4.15040 4.17390 4.24118 4.34122 4.36625 4.42828 4.51815 4.56310 4.62074 4.67852 4.73774 4.89746 4.91226 4.97353 4.99241 5.00084 5.07166 5.22687 5.28853 5.30913 5.47553 5.51298 5.59955 5.70806 5.85660 6.06027 6.15653 6.25875 6.56152 7.19215 7.23174 7.84962 8.74547 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.004514 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.881119 B = 6201.705346 C = 6996.698020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.107 3.893 4 N -0.621 5.621 5 C 0.689 3.311 6 O -0.591 6.591 7 N -0.725 5.725 8 C 0.276 3.724 9 H 0.042 0.958 10 C -0.559 4.559 11 H 0.089 0.911 12 C 0.014 3.986 13 N -0.875 5.875 14 Si 0.983 3.017 15 H -0.270 1.270 16 H -0.285 1.285 17 H -0.258 1.258 18 C 0.413 3.587 19 F -0.153 7.153 20 F -0.219 7.219 21 F -0.206 7.206 22 C 0.159 3.841 23 H 0.134 0.866 24 C -0.131 4.131 25 C 0.047 3.953 26 N -0.540 5.540 27 C 0.021 3.979 28 C 0.042 3.958 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.403 0.597 37 H 0.267 0.733 38 H 0.049 0.951 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.887 0.011 17.930 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C -0.016 4.016 4 N -0.358 5.358 5 C 0.391 3.609 6 O -0.468 6.468 7 N -0.381 5.381 8 C 0.167 3.833 9 H 0.059 0.941 10 C -0.596 4.596 11 H 0.107 0.893 12 C -0.191 4.191 13 N -0.510 5.510 14 Si 0.806 3.194 15 H -0.195 1.195 16 H -0.211 1.211 17 H -0.182 1.182 18 C 0.357 3.643 19 F -0.134 7.134 20 F -0.201 7.201 21 F -0.188 7.188 22 C 0.055 3.945 23 H 0.152 0.848 24 C -0.170 4.170 25 C -0.081 4.081 26 N -0.265 5.265 27 C -0.128 4.128 28 C -0.087 4.087 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.240 0.760 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.577 -0.024 17.271 18.481 hybrid contribution -0.478 -0.496 -0.584 0.903 sum -7.055 -0.521 16.687 18.125 Atomic orbital electron populations 1.21667 0.93362 1.02311 1.02809 1.21939 0.97499 0.96823 1.01626 1.21850 0.77909 0.97279 1.04513 1.47273 1.06809 1.78229 1.03496 1.16258 0.85463 0.78056 0.81144 1.90997 1.12492 1.56988 1.86323 1.45225 1.09969 1.79136 1.03819 1.19051 0.95354 0.86062 0.82796 0.94059 1.21195 1.02161 1.43435 0.92788 0.89302 1.26005 0.96823 0.94948 1.01287 1.70555 1.17428 1.41617 1.21364 0.85173 0.78961 0.78335 0.76934 1.19498 1.21073 1.18159 1.23380 0.73578 0.92408 0.74936 1.93361 1.79472 1.96282 1.44317 1.93072 1.75567 1.88434 1.63001 1.92968 1.50218 1.79638 1.95959 1.21926 0.93599 0.94079 0.84908 0.84838 1.22876 0.95348 0.97561 1.01182 1.23138 0.98095 0.89858 0.97002 1.64547 1.10646 1.03190 1.48071 1.22495 0.98093 0.97172 0.95004 1.23033 0.88643 0.97052 0.99968 0.92595 0.92516 0.90575 0.94759 0.91166 0.86754 0.91013 0.76038 0.92278 0.93185 0.88321 0.91413 0.91294 0.92612 0.91165 0.93745 0.91901 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.91 71.98 0.71 -1.51 16 2 C -0.14 -2.87 6.26 30.59 0.19 -2.67 16 3 C 0.11 2.21 5.15 86.38 0.44 2.66 16 4 N -0.62 -18.01 2.46 -810.81 -1.99 -20.00 16 5 C 0.69 28.20 6.67 179.06 1.19 29.39 16 6 O -0.59 -29.09 11.75 -3.99 -0.05 -29.14 16 7 N -0.73 -30.90 4.85 -461.40 -2.24 -33.14 16 8 C 0.28 14.38 2.21 44.25 0.10 14.48 16 9 H 0.04 2.51 7.58 -2.39 -0.02 2.49 16 10 C -0.56 -28.97 8.47 25.60 0.22 -28.75 16 11 H 0.09 4.24 7.74 -2.91 -0.02 4.22 16 12 C 0.01 0.76 5.20 84.65 0.44 1.20 16 13 N -0.88 -49.88 9.50 21.45 0.20 -49.68 16 14 Si 0.98 41.20 29.54 68.60 2.03 43.23 16 15 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 16 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 18 C 0.41 22.43 2.81 71.98 0.20 22.63 16 19 F -0.15 -9.00 12.91 44.97 0.58 -8.42 16 20 F -0.22 -12.04 15.68 44.97 0.70 -11.33 16 21 F -0.21 -10.55 16.94 44.97 0.76 -9.79 16 22 C 0.16 3.87 3.45 45.87 0.16 4.03 16 23 H 0.13 2.05 7.85 -2.39 -0.02 2.03 16 24 C -0.13 -3.36 6.28 31.86 0.20 -3.16 16 25 C 0.05 1.15 6.56 86.71 0.57 1.72 16 26 N -0.54 -16.49 5.16 -908.80 -4.69 -21.18 16 27 C 0.02 0.50 9.40 127.69 1.20 1.70 16 28 C 0.04 1.21 5.51 86.45 0.48 1.68 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 1.53 7.95 -2.38 -0.02 1.51 16 35 H 0.07 1.58 6.36 -2.39 -0.02 1.57 16 36 H 0.40 14.90 6.27 -92.71 -0.58 14.32 16 37 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.05 1.78 6.29 -2.38 -0.01 1.76 16 39 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 1.23 7.96 -2.39 -0.02 1.21 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 44 H 0.04 0.82 8.00 -2.39 -0.02 0.81 16 45 H 0.06 1.41 7.73 -2.39 -0.02 1.39 16 46 H 0.04 1.54 7.05 -2.39 -0.02 1.52 16 Total: -1.00 -71.00 370.35 1.83 -69.17 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.41 Total: 26.88 kcal Atomic # 6 Polarization: 37.29 SS G_CDS: 6.10 Total: 43.40 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -8.71 Total: -124.00 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.05 Total: -29.14 kcal Atomic # 9 Polarization: -31.59 SS G_CDS: 2.05 Total: -29.54 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -71.00 1.83 -69.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.188 kcal (2) G-P(sol) polarization free energy of solvation -70.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds