Wall clock time and date at job start Tue Mar 31 2020 19:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46917 * 2 1 4 4 N 1.46500 * 109.46781 * 179.97438 * 3 2 1 5 5 C 1.34780 * 119.99869 * 86.33165 * 4 3 2 6 6 O 1.21486 * 120.00115 * 185.81644 * 5 4 3 7 7 C 1.48333 * 119.99687 * 5.81524 * 5 4 3 8 8 C 1.42274 * 126.93511 * 176.58707 * 7 5 4 9 9 C 1.35312 * 103.91941 * 180.02562 * 8 7 5 10 10 C 1.50708 * 126.66378 * 179.97438 * 9 8 7 11 11 O 1.42905 * 109.46785 * 90.00559 * 10 9 8 12 12 C 1.42901 * 113.99536 * 179.97438 * 11 10 9 13 13 O 1.34014 * 106.67206 * 0.26988 * 9 8 7 14 14 N 1.20907 * 111.84182 * 359.51505 * 13 9 8 15 15 C 1.46492 * 120.00266 * 266.32705 * 4 3 2 16 16 H 1.09004 * 110.64424 * 12.01700 * 15 4 3 17 17 C 1.55163 * 110.72051 * 248.87553 * 15 4 3 18 18 C 1.55392 * 101.36505 * 277.04083 * 17 15 4 19 19 N 1.47428 * 104.87299 * 323.01883 * 18 17 15 20 20 C 1.36940 * 125.64542 * 204.09663 * 19 18 17 21 21 H 1.07997 * 119.99847 * 180.02562 * 20 19 18 22 22 C 1.38817 * 119.99770 * 0.03908 * 20 19 18 23 23 N 1.31617 * 120.00359 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99687 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46819 * 90.00133 * 24 22 20 26 26 H 1.48494 * 109.46896 * 210.00026 * 24 22 20 27 27 H 1.48500 * 109.46860 * 330.00274 * 24 22 20 28 28 C 1.47018 * 108.70490 * 24.13040 * 19 18 17 29 29 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47316 * 300.00017 * 1 2 3 31 31 H 1.09004 * 109.47024 * 59.99770 * 1 2 3 32 32 H 1.09003 * 109.47196 * 240.00121 * 2 1 3 33 33 H 1.08994 * 109.47175 * 119.99681 * 2 1 3 34 34 H 1.09003 * 109.47088 * 60.00055 * 3 2 1 35 35 H 1.08994 * 109.46937 * 299.99826 * 3 2 1 36 36 H 1.07994 * 128.04128 * 0.06191 * 8 7 5 37 37 H 1.08995 * 109.47126 * 330.00724 * 10 9 8 38 38 H 1.09001 * 109.46766 * 210.00201 * 10 9 8 39 39 H 1.08999 * 109.46920 * 60.00164 * 12 11 10 40 40 H 1.09004 * 109.46774 * 179.97438 * 12 11 10 41 41 H 1.08999 * 109.47233 * 299.99818 * 12 11 10 42 42 H 1.08993 * 111.00648 * 35.21573 * 17 15 4 43 43 H 1.09000 * 111.00216 * 159.06462 * 17 15 4 44 44 H 1.08991 * 110.33946 * 204.16596 * 18 17 15 45 45 H 1.08998 * 110.43733 * 81.91668 * 18 17 15 46 46 H 0.96994 * 120.00362 * 179.97438 * 23 22 20 47 47 H 1.09003 * 109.88378 * 239.52515 * 28 19 18 48 48 H 1.09005 * 109.88346 * 118.35814 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1793 1.3677 -1.1639 6 8 5.3895 1.2611 -1.1594 7 6 3.4438 1.4154 -2.4512 8 6 4.0066 1.4165 -3.7579 9 6 2.9301 1.4695 -4.5759 10 6 2.9452 1.4944 -6.0827 11 8 2.9009 0.1561 -6.5817 12 6 2.9105 0.0670 -8.0079 13 8 1.8481 1.5021 -3.7859 14 7 2.1452 1.4658 -2.6144 15 6 4.2370 1.5240 1.2669 16 1 3.5648 1.3655 2.1103 17 6 4.9644 2.8887 1.3938 18 6 6.2629 2.6199 0.5837 19 7 6.6145 1.2204 0.8857 20 6 7.8682 0.6761 0.7996 21 1 8.0229 -0.3646 1.0432 22 6 8.9401 1.4621 0.3993 23 7 8.7517 2.7306 0.1032 24 14 10.6503 0.7197 0.2825 25 1 10.8609 0.1744 -1.0826 26 1 11.6649 1.7682 0.5587 27 1 10.7843 -0.3736 1.2784 28 6 5.3963 0.5058 1.2939 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 5.0504 1.3823 -4.0330 37 1 3.8569 1.9813 -6.4289 38 1 2.0782 2.0464 -6.4456 39 1 3.8213 0.5244 -8.3944 40 1 2.8755 -0.9807 -8.3067 41 1 2.0426 0.5892 -8.4104 42 1 4.3768 3.6881 0.9425 43 1 5.1930 3.1142 2.4354 44 1 7.0584 3.2898 0.9099 45 1 6.0781 2.7428 -0.4834 46 1 9.5007 3.2799 -0.1761 47 1 5.5188 0.1102 2.3023 48 1 5.1921 -0.3070 0.5969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267547952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:29 Heat of formation + Delta-G solvation = 37.661906 kcal Electronic energy + Delta-G solvation = -31026.303914 eV Core-core repulsion = 26894.171844 eV Total energy + Delta-G solvation = -4132.132070 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.17701 -41.51890 -38.92653 -38.12579 -37.27025 -35.09850 -34.49282 -33.72537 -33.07665 -30.90100 -29.14487 -28.71322 -27.19100 -26.60249 -26.49048 -25.49931 -23.73037 -22.67228 -22.08991 -21.86763 -19.76611 -18.98051 -18.82697 -18.56940 -18.03655 -17.26373 -17.21174 -16.80799 -16.70183 -16.43274 -16.01798 -15.65956 -15.56868 -15.37423 -14.81064 -14.56814 -14.32275 -13.96628 -13.83147 -13.68476 -13.40487 -13.36293 -13.04036 -12.99313 -12.81440 -12.74204 -12.51055 -12.41611 -12.35600 -12.08701 -12.00425 -11.93217 -11.73294 -11.51144 -11.33990 -11.28781 -10.94241 -10.72312 -10.67385 -10.52263 -9.49660 -8.63627 -7.64909 -5.03797 0.01144 0.52883 1.42646 1.46300 1.54138 1.70995 1.89333 2.17893 2.54523 2.82015 2.98139 3.40581 3.45280 3.78538 3.83194 3.86981 3.89461 4.04583 4.07056 4.15088 4.20021 4.27666 4.39647 4.43316 4.50136 4.52484 4.56527 4.64810 4.71055 4.76905 4.80207 4.84814 4.93049 4.95574 5.00367 5.01789 5.09672 5.20637 5.24575 5.44647 5.49388 5.73324 5.87568 5.97527 6.08965 6.36458 6.43357 6.90787 7.21127 7.27880 7.93835 8.59137 9.36411 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009783 B = 0.004104 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.403809 B = 6820.232847 C = 8962.561818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.097 3.903 4 N -0.592 5.592 5 C 0.550 3.450 6 O -0.487 6.487 7 C -0.035 4.035 8 C -0.180 4.180 9 C -0.020 4.020 10 C 0.146 3.854 11 O -0.417 6.417 12 C 0.026 3.974 13 O 0.130 5.870 14 N -0.317 5.317 15 C 0.148 3.852 16 H 0.134 0.866 17 C -0.145 4.145 18 C 0.161 3.839 19 N -0.595 5.595 20 C -0.221 4.221 21 H 0.068 0.932 22 C -0.070 4.070 23 N -0.946 5.946 24 Si 0.974 3.026 25 H -0.295 1.295 26 H -0.291 1.291 27 H -0.270 1.270 28 C 0.136 3.864 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.172 0.828 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.009 0.991 46 H 0.240 0.760 47 H 0.034 0.966 48 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.594 -0.743 -10.957 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C -0.024 4.024 4 N -0.326 5.326 5 C 0.335 3.665 6 O -0.358 6.358 7 C -0.192 4.192 8 C -0.203 4.203 9 C -0.083 4.083 10 C 0.069 3.931 11 O -0.337 6.337 12 C -0.070 4.070 13 O 0.054 5.946 14 N -0.018 5.018 15 C 0.045 3.955 16 H 0.152 0.848 17 C -0.185 4.185 18 C 0.036 3.964 19 N -0.320 5.320 20 C -0.351 4.351 21 H 0.086 0.914 22 C -0.262 4.262 23 N -0.598 5.598 24 Si 0.803 3.197 25 H -0.222 1.222 26 H -0.217 1.217 27 H -0.195 1.195 28 C 0.009 3.991 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.190 0.810 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.026 0.974 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -21.721 -0.907 -9.956 23.911 hybrid contribution 2.217 -0.354 -0.768 2.373 sum -19.504 -1.261 -10.724 22.294 Atomic orbital electron populations 1.21603 0.92937 1.02276 1.02707 1.21796 0.97837 0.96267 1.00842 1.22238 0.76847 0.98148 1.05192 1.47805 1.07695 1.72625 1.04471 1.17510 0.86498 0.79730 0.82772 1.91208 1.13353 1.45131 1.86125 1.23641 0.90583 1.08117 0.96905 1.22590 1.02249 1.05372 0.90059 1.24331 0.84264 1.03446 0.96305 1.20935 1.05522 0.85571 0.81083 1.87932 1.95785 1.26019 1.23914 1.23014 1.01854 1.04058 0.78027 1.84741 1.33537 1.65019 1.11353 1.74214 1.14722 1.16196 0.96713 1.22106 0.92858 0.95129 0.85383 0.84801 1.23457 0.97448 0.96295 1.01274 1.21929 0.93370 0.85998 0.95114 1.44382 1.02382 1.07557 1.77646 1.19327 0.84685 0.94321 1.36744 0.91437 1.25483 1.01332 0.96644 1.02737 1.70118 1.29367 1.06422 1.53850 0.85132 0.79990 0.77143 0.77434 1.22231 1.21690 1.19507 1.21537 0.87364 0.94079 0.96097 0.92263 0.90996 0.92344 0.94884 0.92103 0.87872 0.88357 0.81014 0.87504 0.87260 0.92498 0.88774 0.91605 0.90793 0.90002 0.92732 0.97384 0.95011 0.94843 0.98281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 71.98 0.71 -1.65 16 2 C -0.13 -3.03 5.97 30.60 0.18 -2.84 16 3 C 0.10 2.44 4.97 86.38 0.43 2.87 16 4 N -0.59 -20.31 2.51 -794.07 -1.99 -22.30 16 5 C 0.55 22.81 6.78 86.93 0.59 23.40 16 6 O -0.49 -25.71 10.34 -3.67 -0.04 -25.75 16 7 C -0.03 -1.21 6.91 42.96 0.30 -0.91 16 8 C -0.18 -5.59 10.92 22.60 0.25 -5.34 16 9 C -0.02 -0.47 7.10 25.01 0.18 -0.29 16 10 C 0.15 2.15 6.50 71.24 0.46 2.62 16 11 O -0.42 -7.73 10.69 -148.98 -1.59 -9.32 16 12 C 0.03 0.26 11.01 113.37 1.25 1.51 16 13 O 0.13 3.19 11.18 71.89 0.80 3.99 16 14 N -0.32 -9.07 8.04 -49.51 -0.40 -9.47 16 15 C 0.15 5.31 3.66 46.18 0.17 5.47 16 16 H 0.13 3.56 7.95 -2.39 -0.02 3.55 16 17 C -0.15 -5.78 6.71 32.16 0.22 -5.56 16 18 C 0.16 8.74 4.91 87.02 0.43 9.17 16 19 N -0.60 -33.76 2.27 -691.02 -1.57 -35.33 16 20 C -0.22 -13.69 10.27 84.03 0.86 -12.83 16 21 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.07 -4.34 5.49 84.86 0.47 -3.87 16 23 N -0.95 -61.14 10.09 21.65 0.22 -60.92 16 24 Si 0.97 49.71 29.55 68.60 2.03 51.74 16 25 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 26 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 27 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 28 C 0.14 6.25 6.00 86.73 0.52 6.77 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.03 0.94 7.80 -2.39 -0.02 0.92 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 2.01 7.98 -2.39 -0.02 1.99 16 35 H 0.10 2.54 4.98 -2.39 -0.01 2.53 16 36 H 0.17 5.53 8.06 -2.91 -0.02 5.51 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 44 H 0.05 3.38 5.87 -2.39 -0.01 3.37 16 45 H 0.01 0.53 5.32 -8.61 -0.05 0.48 16 46 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.00 -0.04 7.31 -2.38 -0.02 -0.05 16 Total: -1.00 -82.98 382.23 5.39 -77.58 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.92 Total: 11.26 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 7.01 Total: 18.52 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -3.74 Total: -128.02 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.83 Total: -31.08 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.03 Total: 51.74 kcal Total: -82.98 5.39 -77.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267547952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.244 kcal (2) G-P(sol) polarization free energy of solvation -82.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds