Wall clock time and date at job start Tue Mar 31 2020 19:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46669 * 2 1 4 4 N 1.46504 * 109.46758 * 180.02562 * 3 2 1 5 5 C 1.34776 * 119.99806 * 272.74447 * 4 3 2 6 6 O 1.21494 * 120.00206 * 185.36397 * 5 4 3 7 7 C 1.48330 * 119.99916 * 5.37307 * 5 4 3 8 8 C 1.42280 * 126.93608 * 185.62498 * 7 5 4 9 9 C 1.35314 * 103.92067 * 179.97438 * 8 7 5 10 10 C 1.50701 * 126.66525 * 179.97438 * 9 8 7 11 11 O 1.42896 * 109.46935 * 90.00373 * 10 9 8 12 12 C 1.42902 * 114.00099 * 180.02562 * 11 10 9 13 13 O 1.34016 * 106.67035 * 0.02562 * 9 8 7 14 14 N 1.20908 * 111.84568 * 359.70137 * 13 9 8 15 15 C 1.46502 * 120.00042 * 92.75490 * 4 3 2 16 16 H 1.08997 * 110.88753 * 356.11181 * 15 4 3 17 17 C 1.55153 * 111.00636 * 119.99588 * 15 4 3 18 18 C 1.54323 * 102.94287 * 153.57425 * 17 15 4 19 19 N 1.47022 * 107.27255 * 337.80665 * 18 17 15 20 20 C 1.36938 * 125.65447 * 178.96158 * 19 18 17 21 21 H 1.08000 * 120.00444 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99461 * 359.97438 * 20 19 18 23 23 N 1.31617 * 119.99972 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99816 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47295 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47415 * 119.99975 * 24 22 20 27 27 H 1.48508 * 109.46975 * 239.99845 * 24 22 20 28 28 C 1.47433 * 108.70082 * 358.93993 * 19 18 17 29 29 H 1.08996 * 109.47527 * 60.00578 * 1 2 3 30 30 H 1.09005 * 109.46743 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47394 * 299.99665 * 1 2 3 32 32 H 1.09002 * 109.47394 * 240.00335 * 2 1 3 33 33 H 1.08996 * 109.47527 * 119.99422 * 2 1 3 34 34 H 1.09002 * 109.47385 * 60.00347 * 3 2 1 35 35 H 1.08995 * 109.47144 * 299.99696 * 3 2 1 36 36 H 1.08001 * 128.03636 * 359.97438 * 8 7 5 37 37 H 1.09003 * 109.47137 * 210.00156 * 10 9 8 38 38 H 1.09004 * 109.46902 * 330.00477 * 10 9 8 39 39 H 1.08993 * 109.46915 * 59.99898 * 12 11 10 40 40 H 1.08999 * 109.47212 * 180.02562 * 12 11 10 41 41 H 1.09000 * 109.46941 * 299.99777 * 12 11 10 42 42 H 1.09000 * 110.71954 * 271.93864 * 17 15 4 43 43 H 1.09005 * 110.72032 * 35.03240 * 17 15 4 44 44 H 1.08998 * 109.88492 * 97.22523 * 18 17 15 45 45 H 1.08998 * 109.88517 * 218.23540 * 18 17 15 46 46 H 0.97003 * 119.99996 * 180.02562 * 23 22 20 47 47 H 1.09003 * 110.36917 * 265.28692 * 28 19 18 48 48 H 1.09004 * 110.36403 * 142.96699 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1792 1.3866 1.1650 6 8 5.3902 1.4847 1.1716 7 6 3.4429 1.2048 2.4397 8 6 3.9877 1.2364 3.7537 9 6 2.9185 1.0210 4.5547 10 6 2.9212 0.9525 6.0601 11 8 2.7000 2.2583 6.5967 12 6 2.6845 2.3049 8.0248 13 8 1.8570 0.8792 3.7490 14 7 2.1591 0.9883 2.5834 15 6 4.2369 1.5038 -1.2682 16 1 3.5509 1.4755 -2.1148 17 6 5.1420 2.7625 -1.3276 18 6 6.2650 2.3354 -2.2961 19 7 6.3047 0.8657 -2.2975 20 6 7.1514 0.0908 -3.0443 21 1 7.1019 -0.9857 -2.9737 22 6 8.0734 0.6891 -3.8922 23 7 8.1334 2.0011 -3.9786 24 14 9.2280 -0.3679 -4.9115 25 1 8.9602 -1.8021 -4.6348 26 1 9.0079 -0.0920 -6.3540 27 1 10.6343 -0.0497 -4.5556 28 6 5.2822 0.3643 -1.3611 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9563 -0.8900 36 1 5.0157 1.3953 4.0443 37 1 2.1286 0.2831 6.3948 38 1 3.8844 0.5763 6.4050 39 1 3.6428 1.9570 8.4101 40 1 2.5109 3.3297 8.3531 41 1 1.8873 1.6635 8.4006 42 1 4.5919 3.6147 -1.7267 43 1 5.5463 2.9937 -0.3420 44 1 6.0480 2.7013 -3.2997 45 1 7.2204 2.7340 -1.9550 46 1 8.7775 2.4191 -4.5714 47 1 5.7241 0.1741 -0.3830 48 1 4.8212 -0.5424 -1.7529 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267547953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:34 Heat of formation + Delta-G solvation = 32.694895 kcal Electronic energy + Delta-G solvation = -30184.387081 eV Core-core repulsion = 26052.039625 eV Total energy + Delta-G solvation = -4132.347456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.25441 -40.06803 -38.41995 -36.85825 -36.01550 -34.11552 -33.02542 -32.83521 -31.66544 -29.08720 -28.18983 -27.46901 -26.27423 -25.98283 -24.97304 -23.82291 -22.68341 -21.72459 -20.90223 -19.99056 -18.79286 -18.11337 -17.71012 -17.02135 -16.73134 -16.68864 -16.31674 -15.91029 -15.11273 -14.80496 -14.70856 -14.54152 -14.35505 -13.95154 -13.76334 -13.39420 -13.32744 -13.00824 -12.67782 -12.38814 -12.24323 -12.14052 -12.01115 -11.82430 -11.70290 -11.50478 -11.34049 -10.90898 -10.85483 -10.78251 -10.68042 -10.40738 -10.38345 -10.28546 -10.01537 -9.91690 -9.75494 -9.59958 -9.32401 -8.55274 -8.34044 -6.70011 -5.61880 -2.94550 0.91453 1.45070 2.55304 2.91657 3.23490 3.45480 3.50526 3.53175 3.53647 3.81660 4.17700 4.53996 4.58164 4.66251 4.81227 4.86441 4.88140 4.92112 4.99418 5.05267 5.21715 5.22036 5.31421 5.39374 5.47167 5.52090 5.62942 5.66586 5.70875 5.78884 5.83237 5.90586 5.99966 6.09423 6.27049 6.33862 6.49864 6.52610 6.62477 6.67831 6.77008 7.20155 7.50332 7.65947 7.76246 7.81694 7.92650 8.25552 8.35684 9.31367 9.91559 10.58573 11.49952 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.002731 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.574749 B =10250.832112 C =11237.857273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.107 3.893 4 N -0.588 5.588 5 C 0.589 3.411 6 O -0.497 6.497 7 C -0.020 4.020 8 C -0.152 4.152 9 C -0.045 4.045 10 C 0.146 3.854 11 O -0.385 6.385 12 C 0.031 3.969 13 O 0.122 5.878 14 N -0.316 5.316 15 C 0.131 3.869 16 H 0.096 0.904 17 C -0.155 4.155 18 C 0.185 3.815 19 N -0.601 5.601 20 C -0.222 4.222 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.127 3.873 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.182 0.818 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.043 0.957 46 H 0.251 0.749 47 H 0.043 0.957 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.359 -0.913 21.747 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.016 4.016 4 N -0.320 5.320 5 C 0.373 3.627 6 O -0.370 6.370 7 C -0.179 4.179 8 C -0.175 4.175 9 C -0.108 4.108 10 C 0.069 3.931 11 O -0.304 6.304 12 C -0.065 4.065 13 O 0.046 5.954 14 N -0.017 5.017 15 C 0.028 3.972 16 H 0.114 0.886 17 C -0.195 4.195 18 C 0.060 3.940 19 N -0.328 5.328 20 C -0.350 4.350 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.000 4.000 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.200 0.800 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -17.511 -0.778 20.536 27.000 hybrid contribution 1.309 -0.592 -0.036 1.437 sum -16.202 -1.370 20.501 26.166 Atomic orbital electron populations 1.21633 0.95157 1.01617 1.01737 1.21868 0.96134 0.96913 1.02435 1.21863 0.78819 0.97640 1.03277 1.47846 1.06807 1.71554 1.05785 1.16929 0.86308 0.78170 0.81270 1.90864 1.12375 1.48135 1.85619 1.23722 0.90350 1.06716 0.97075 1.22514 1.01804 1.03275 0.89868 1.23841 0.86345 1.05809 0.94825 1.20636 1.02663 0.86299 0.83532 1.87985 1.93656 1.27583 1.21185 1.22820 1.00531 1.03350 0.79784 1.84794 1.34267 1.64838 1.11491 1.74420 1.15547 1.15265 0.96509 1.22513 0.93460 0.98640 0.82593 0.88630 1.23281 0.98292 0.95692 1.02190 1.21052 0.93998 0.83642 0.95284 1.44328 1.38877 1.01974 1.47623 1.19094 1.10306 0.89584 1.16058 0.90494 1.24797 0.99708 0.95904 1.00264 1.69983 1.38381 1.07375 1.41293 0.86037 0.80707 0.79188 0.79804 1.20575 1.21835 1.21805 1.21845 0.89536 0.93548 0.95064 0.92846 0.92789 0.92415 0.91777 0.91694 0.89579 0.90268 0.80031 0.90460 0.89343 0.93486 0.89050 0.93537 0.92555 0.90607 0.93689 0.93852 0.93893 0.93969 0.94851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.91 37.16 0.37 -1.01 16 2 C -0.13 -1.61 5.73 -26.73 -0.15 -1.77 16 3 C 0.11 1.38 4.94 -4.04 -0.02 1.36 16 4 N -0.59 -9.64 2.56 -164.59 -0.42 -10.06 16 5 C 0.59 10.32 6.95 -12.11 -0.08 10.23 16 6 O -0.50 -10.48 13.02 5.37 0.07 -10.41 16 7 C -0.02 -0.29 6.69 -82.52 -0.55 -0.84 16 8 C -0.15 -1.81 10.93 -39.07 -0.43 -2.24 16 9 C -0.05 -0.44 7.10 -35.35 -0.25 -0.69 16 10 C 0.15 0.93 6.50 36.01 0.23 1.16 16 11 O -0.39 -3.11 10.69 -35.23 -0.38 -3.49 16 12 C 0.03 0.14 11.01 101.05 1.11 1.25 16 13 O 0.12 1.34 11.18 17.24 0.19 1.54 16 14 N -0.32 -4.00 7.17 33.30 0.24 -3.76 16 15 C 0.13 2.51 3.54 -65.78 -0.23 2.27 16 16 H 0.10 1.70 7.88 -51.93 -0.41 1.29 16 17 C -0.16 -3.27 6.32 -24.90 -0.16 -3.43 16 18 C 0.19 4.85 5.37 -3.06 -0.02 4.83 16 19 N -0.60 -16.48 3.39 -170.06 -0.58 -17.06 16 20 C -0.22 -6.52 10.28 -15.06 -0.15 -6.68 16 21 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 22 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 23 N -0.92 -28.22 10.31 55.49 0.57 -27.65 16 24 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 C 0.13 2.93 6.58 -2.52 -0.02 2.91 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.85 6.61 -51.93 -0.34 0.51 16 34 H 0.09 1.09 5.75 -51.93 -0.30 0.79 16 35 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 36 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.08 1.68 6.07 -51.93 -0.32 1.36 16 44 H 0.04 1.26 7.38 -51.93 -0.38 0.88 16 45 H 0.04 1.27 7.51 -51.93 -0.39 0.88 16 46 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.04 1.05 5.72 -51.93 -0.30 0.75 16 48 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -34.97 385.14 -7.44 -42.41 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.47 Total: -2.20 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -0.45 Total: 6.96 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.19 Total: -58.54 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.11 Total: -12.36 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.97 -7.44 -42.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267547953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.101 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds