Wall clock time and date at job start Tue Mar 31 2020 19:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46669 * 2 1 4 4 N 1.46504 * 109.46758 * 180.02562 * 3 2 1 5 5 C 1.34776 * 119.99806 * 272.74447 * 4 3 2 6 6 O 1.21494 * 120.00206 * 185.36397 * 5 4 3 7 7 C 1.48330 * 119.99916 * 5.37307 * 5 4 3 8 8 C 1.42280 * 126.93608 * 185.62498 * 7 5 4 9 9 C 1.35314 * 103.92067 * 179.97438 * 8 7 5 10 10 C 1.50701 * 126.66525 * 179.97438 * 9 8 7 11 11 O 1.42896 * 109.46935 * 90.00373 * 10 9 8 12 12 C 1.42902 * 114.00099 * 180.02562 * 11 10 9 13 13 O 1.34016 * 106.67035 * 0.02562 * 9 8 7 14 14 N 1.20908 * 111.84568 * 359.70137 * 13 9 8 15 15 C 1.46502 * 120.00042 * 92.75490 * 4 3 2 16 16 H 1.08997 * 110.88753 * 356.11181 * 15 4 3 17 17 C 1.55153 * 111.00636 * 119.99588 * 15 4 3 18 18 C 1.54323 * 102.94287 * 153.57425 * 17 15 4 19 19 N 1.47022 * 107.27255 * 337.80665 * 18 17 15 20 20 C 1.36938 * 125.65447 * 178.96158 * 19 18 17 21 21 H 1.08000 * 120.00444 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99461 * 359.97438 * 20 19 18 23 23 N 1.31617 * 119.99972 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99816 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47295 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47415 * 119.99975 * 24 22 20 27 27 H 1.48508 * 109.46975 * 239.99845 * 24 22 20 28 28 C 1.47433 * 108.70082 * 358.93993 * 19 18 17 29 29 H 1.08996 * 109.47527 * 60.00578 * 1 2 3 30 30 H 1.09005 * 109.46743 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47394 * 299.99665 * 1 2 3 32 32 H 1.09002 * 109.47394 * 240.00335 * 2 1 3 33 33 H 1.08996 * 109.47527 * 119.99422 * 2 1 3 34 34 H 1.09002 * 109.47385 * 60.00347 * 3 2 1 35 35 H 1.08995 * 109.47144 * 299.99696 * 3 2 1 36 36 H 1.08001 * 128.03636 * 359.97438 * 8 7 5 37 37 H 1.09003 * 109.47137 * 210.00156 * 10 9 8 38 38 H 1.09004 * 109.46902 * 330.00477 * 10 9 8 39 39 H 1.08993 * 109.46915 * 59.99898 * 12 11 10 40 40 H 1.08999 * 109.47212 * 180.02562 * 12 11 10 41 41 H 1.09000 * 109.46941 * 299.99777 * 12 11 10 42 42 H 1.09000 * 110.71954 * 271.93864 * 17 15 4 43 43 H 1.09005 * 110.72032 * 35.03240 * 17 15 4 44 44 H 1.08998 * 109.88492 * 97.22523 * 18 17 15 45 45 H 1.08998 * 109.88517 * 218.23540 * 18 17 15 46 46 H 0.97003 * 119.99996 * 180.02562 * 23 22 20 47 47 H 1.09003 * 110.36917 * 265.28692 * 28 19 18 48 48 H 1.09004 * 110.36403 * 142.96699 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1792 1.3866 1.1650 6 8 5.3902 1.4847 1.1716 7 6 3.4429 1.2048 2.4397 8 6 3.9877 1.2364 3.7537 9 6 2.9185 1.0210 4.5547 10 6 2.9212 0.9525 6.0601 11 8 2.7000 2.2583 6.5967 12 6 2.6845 2.3049 8.0248 13 8 1.8570 0.8792 3.7490 14 7 2.1591 0.9883 2.5834 15 6 4.2369 1.5038 -1.2682 16 1 3.5509 1.4755 -2.1148 17 6 5.1420 2.7625 -1.3276 18 6 6.2650 2.3354 -2.2961 19 7 6.3047 0.8657 -2.2975 20 6 7.1514 0.0908 -3.0443 21 1 7.1019 -0.9857 -2.9737 22 6 8.0734 0.6891 -3.8922 23 7 8.1334 2.0011 -3.9786 24 14 9.2280 -0.3679 -4.9115 25 1 8.9602 -1.8021 -4.6348 26 1 9.0079 -0.0920 -6.3540 27 1 10.6343 -0.0497 -4.5556 28 6 5.2822 0.3643 -1.3611 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9563 -0.8900 36 1 5.0157 1.3953 4.0443 37 1 2.1286 0.2831 6.3948 38 1 3.8844 0.5763 6.4050 39 1 3.6428 1.9570 8.4101 40 1 2.5109 3.3297 8.3531 41 1 1.8873 1.6635 8.4006 42 1 4.5919 3.6147 -1.7267 43 1 5.5463 2.9937 -0.3420 44 1 6.0480 2.7013 -3.2997 45 1 7.2204 2.7340 -1.9550 46 1 8.7775 2.4191 -4.5714 47 1 5.7241 0.1741 -0.3830 48 1 4.8212 -0.5424 -1.7529 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267547953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:33 Heat of formation + Delta-G solvation = 10.067445 kcal Electronic energy + Delta-G solvation = -30185.368280 eV Core-core repulsion = 26052.039625 eV Total energy + Delta-G solvation = -4133.328655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.21744 -41.50144 -38.89823 -38.63317 -37.34505 -35.22040 -34.55494 -33.69165 -33.30847 -31.06503 -29.26585 -28.70679 -27.30433 -26.81253 -26.46937 -25.27636 -23.71112 -22.77002 -22.34079 -22.03134 -19.98584 -19.03965 -18.92994 -18.72367 -18.06927 -17.28524 -17.19042 -16.74408 -16.66594 -16.26808 -16.11218 -15.87727 -15.58536 -15.44332 -14.81742 -14.65009 -14.58101 -14.22600 -13.84225 -13.81133 -13.71102 -13.32642 -13.03460 -13.01636 -12.83681 -12.80251 -12.56809 -12.44811 -12.36764 -12.18707 -12.04638 -11.99878 -11.91746 -11.80857 -11.66457 -11.40310 -10.94472 -10.74513 -10.69387 -10.63652 -9.80664 -8.90790 -7.86980 -5.23681 -0.04631 0.48099 1.43164 1.45735 1.55294 1.58533 1.84683 1.96524 2.47769 2.71415 2.98282 3.30401 3.40267 3.64549 3.77649 3.81528 3.83357 3.97826 4.02373 4.08477 4.15819 4.16655 4.37211 4.41525 4.48281 4.52083 4.59320 4.62091 4.67313 4.68272 4.71954 4.78663 4.84966 4.92303 4.96685 4.97788 5.00129 5.20647 5.24874 5.39883 5.45037 5.56977 5.61910 5.70421 6.11396 6.15532 6.19369 6.80205 6.98998 7.06620 7.72362 8.38445 9.23886 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.002731 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.574749 B =10250.832112 C =11237.857273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.105 3.895 4 N -0.585 5.585 5 C 0.585 3.415 6 O -0.544 6.544 7 C -0.045 4.045 8 C -0.169 4.169 9 C -0.023 4.023 10 C 0.144 3.856 11 O -0.415 6.415 12 C 0.026 3.974 13 O 0.136 5.864 14 N -0.313 5.313 15 C 0.150 3.850 16 H 0.119 0.881 17 C -0.141 4.141 18 C 0.196 3.804 19 N -0.621 5.621 20 C -0.243 4.243 21 H 0.081 0.919 22 C -0.068 4.068 23 N -0.952 5.952 24 Si 0.984 3.016 25 H -0.266 1.266 26 H -0.286 1.286 27 H -0.293 1.293 28 C 0.126 3.874 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.187 0.813 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.022 0.978 45 H -0.001 1.001 46 H 0.248 0.752 47 H 0.024 0.976 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.719 -1.859 23.159 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C -0.016 4.016 4 N -0.316 5.316 5 C 0.372 3.628 6 O -0.420 6.420 7 C -0.202 4.202 8 C -0.192 4.192 9 C -0.087 4.087 10 C 0.067 3.933 11 O -0.335 6.335 12 C -0.069 4.069 13 O 0.056 5.944 14 N -0.012 5.012 15 C 0.046 3.954 16 H 0.136 0.864 17 C -0.180 4.180 18 C 0.071 3.929 19 N -0.348 5.348 20 C -0.372 4.372 21 H 0.098 0.902 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.812 3.188 25 H -0.190 1.190 26 H -0.213 1.213 27 H -0.220 1.220 28 C 0.000 4.000 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.204 0.796 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.040 0.960 45 H 0.017 0.983 46 H 0.057 0.943 47 H 0.042 0.958 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.930 -1.738 21.956 29.703 hybrid contribution 1.998 -0.313 -0.326 2.048 sum -17.932 -2.051 21.630 28.171 Atomic orbital electron populations 1.21587 0.92967 1.02382 1.02530 1.21810 0.97913 0.95818 1.01307 1.22118 0.76305 0.98677 1.04524 1.47863 1.08194 1.71035 1.04501 1.17343 0.85995 0.77027 0.82424 1.90836 1.14451 1.50238 1.86506 1.23365 0.91205 1.09256 0.96416 1.22664 1.02826 1.04401 0.89296 1.24388 0.84869 1.03234 0.96167 1.20947 1.05062 0.86398 0.80860 1.87925 1.93982 1.28412 1.23216 1.23004 1.01862 1.04098 0.77982 1.84772 1.34582 1.63863 1.11159 1.74395 1.14584 1.14847 0.97406 1.22179 0.92994 0.95407 0.84775 0.86357 1.23075 0.97185 0.97590 1.00131 1.20765 0.93794 0.83292 0.95069 1.44625 1.39723 1.02500 1.47952 1.19485 1.11109 0.90164 1.16467 0.90151 1.25727 1.01409 0.97286 1.01631 1.70207 1.38947 1.09073 1.41861 0.84929 0.77881 0.78136 0.77865 1.19001 1.21297 1.21957 1.21888 0.89661 0.95335 0.93114 0.91744 0.92083 0.91909 0.92746 0.93017 0.88975 0.88317 0.79607 0.87693 0.87078 0.92309 0.88810 0.91906 0.89604 0.91874 0.95993 0.98310 0.94271 0.95843 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.91 71.98 0.71 -1.53 16 2 C -0.13 -2.88 5.73 30.59 0.18 -2.70 16 3 C 0.11 2.51 4.94 86.38 0.43 2.94 16 4 N -0.58 -18.87 2.56 -792.95 -2.03 -20.90 16 5 C 0.59 20.83 6.95 86.93 0.60 21.43 16 6 O -0.54 -23.96 13.02 -3.70 -0.05 -24.01 16 7 C -0.05 -1.29 6.69 42.96 0.29 -1.00 16 8 C -0.17 -3.92 10.93 22.60 0.25 -3.68 16 9 C -0.02 -0.41 7.10 25.01 0.18 -0.23 16 10 C 0.14 1.40 6.50 71.24 0.46 1.86 16 11 O -0.42 -5.72 10.69 -148.98 -1.59 -7.31 16 12 C 0.03 0.16 11.01 113.37 1.25 1.41 16 13 O 0.14 2.70 11.18 71.88 0.80 3.50 16 14 N -0.31 -7.49 7.17 -49.51 -0.36 -7.85 16 15 C 0.15 5.71 3.54 46.38 0.16 5.88 16 16 H 0.12 4.00 7.88 -2.39 -0.02 3.98 16 17 C -0.14 -6.01 6.32 31.78 0.20 -5.81 16 18 C 0.20 10.72 5.37 86.73 0.47 11.19 16 19 N -0.62 -35.20 3.39 -691.96 -2.35 -37.55 16 20 C -0.24 -14.66 10.28 84.03 0.86 -13.80 16 21 H 0.08 4.64 7.83 -2.91 -0.02 4.62 16 22 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 23 N -0.95 -60.27 10.31 21.65 0.22 -60.05 16 24 Si 0.98 47.96 29.55 68.60 2.03 49.99 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 27 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 28 C 0.13 5.94 6.58 86.85 0.57 6.51 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.29 6.61 -2.39 -0.02 1.27 16 34 H 0.09 2.14 5.75 -2.39 -0.01 2.13 16 35 H 0.10 2.00 7.93 -2.39 -0.02 1.98 16 36 H 0.19 4.01 8.06 -2.91 -0.02 3.98 16 37 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.06 2.88 6.07 -2.38 -0.01 2.87 16 44 H 0.02 1.28 7.38 -2.39 -0.02 1.26 16 45 H 0.00 -0.09 7.51 -2.39 -0.02 -0.10 16 46 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.02 1.22 5.72 -2.39 -0.01 1.21 16 48 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -79.55 385.14 4.71 -74.84 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.96 Total: 10.48 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 7.07 Total: 18.86 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -4.51 Total: -126.34 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.84 Total: -27.82 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -79.55 4.71 -74.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267547953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.904 kcal (2) G-P(sol) polarization free energy of solvation -79.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds