Wall clock time and date at job start Tue Mar 31 2020 19:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46937 * 2 1 4 4 N 1.46495 * 109.47061 * 181.69493 * 3 2 1 5 5 C 1.34777 * 120.00016 * 84.66087 * 4 3 2 6 6 O 1.21284 * 120.00047 * 175.13505 * 5 4 3 7 7 C 1.50700 * 120.00080 * 355.13125 * 5 4 3 8 8 O 1.42904 * 109.47357 * 180.02562 * 7 5 4 9 9 C 1.35701 * 117.00300 * 179.97438 * 8 7 5 10 10 C 1.41929 * 126.88034 * 179.70442 * 9 8 7 11 11 C 1.35274 * 103.96148 * 179.91530 * 10 9 8 12 12 C 1.50696 * 126.70851 * 180.11484 * 11 10 9 13 13 O 1.34079 * 106.58102 * 0.35008 * 11 10 9 14 14 N 1.20914 * 111.71606 * 359.76452 * 13 11 10 15 15 C 1.46500 * 120.00042 * 264.65709 * 4 3 2 16 16 H 1.08999 * 110.88797 * 180.30860 * 15 4 3 17 17 C 1.55153 * 111.00172 * 56.42685 * 15 4 3 18 18 C 1.54325 * 102.94142 * 277.42492 * 17 15 4 19 19 N 1.47017 * 107.27301 * 337.81048 * 18 17 15 20 20 C 1.36936 * 125.65166 * 178.89400 * 19 18 17 21 21 H 1.08000 * 119.99982 * 180.02562 * 20 19 18 22 22 C 1.38814 * 119.99897 * 0.02562 * 20 19 18 23 23 N 1.31616 * 119.99770 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00284 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47215 * 59.99785 * 24 22 20 26 26 H 1.48497 * 109.47197 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47083 * 300.00166 * 24 22 20 28 28 C 1.47431 * 108.70310 * 358.93677 * 19 18 17 29 29 H 1.09002 * 109.46630 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47517 * 300.00460 * 1 2 3 31 31 H 1.08997 * 109.46683 * 60.00483 * 1 2 3 32 32 H 1.09002 * 109.47760 * 240.00155 * 2 1 3 33 33 H 1.08997 * 109.47180 * 119.99338 * 2 1 3 34 34 H 1.08999 * 109.46900 * 301.69064 * 3 2 1 35 35 H 1.08992 * 109.47454 * 61.69195 * 3 2 1 36 36 H 1.08994 * 109.47454 * 300.00043 * 7 5 4 37 37 H 1.09001 * 109.46970 * 60.00781 * 7 5 4 38 38 H 1.07997 * 128.01931 * 0.04259 * 10 9 8 39 39 H 1.09004 * 109.47325 * 180.26023 * 12 11 10 40 40 H 1.08996 * 109.47281 * 300.25808 * 12 11 10 41 41 H 1.09003 * 109.47469 * 60.26378 * 12 11 10 42 42 H 1.08996 * 110.72563 * 35.79502 * 17 15 4 43 43 H 1.09007 * 110.71968 * 158.89080 * 17 15 4 44 44 H 1.08998 * 109.88069 * 97.22814 * 18 17 15 45 45 H 1.08999 * 109.88454 * 218.39114 * 18 17 15 46 46 H 0.97001 * 120.00236 * 180.02562 * 23 22 20 47 47 H 1.08997 * 110.36686 * 265.28851 * 28 19 18 48 48 H 1.09001 * 110.36433 * 142.96294 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5044 1.4428 -0.0409 5 6 4.1456 1.3458 -1.2223 6 8 5.3544 1.4346 -1.2654 7 6 3.3605 1.1268 -2.4900 8 8 4.2578 1.0580 -3.6001 9 6 3.7082 0.8621 -4.8253 10 6 4.3971 0.7671 -6.0625 11 6 3.4129 0.5723 -6.9699 12 6 3.5805 0.4001 -8.4576 13 8 2.2588 0.5676 -6.2875 14 7 2.4388 0.7291 -5.1028 15 6 4.2718 1.5486 1.2025 16 1 5.3428 1.5399 1.0001 17 6 3.8838 0.4194 2.1933 18 6 2.6092 0.9720 2.8652 19 7 2.6322 2.4337 2.7094 20 6 1.6664 3.2986 3.1501 21 1 1.7765 4.3603 2.9856 22 6 0.5458 2.8108 3.8083 23 7 0.4119 1.5170 4.0091 24 14 -0.7721 3.9906 4.4089 25 1 -1.3314 4.7377 3.2537 26 1 -1.8564 3.2245 5.0741 27 1 -0.1764 4.9475 5.3757 28 6 3.8669 2.8140 1.9991 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8935 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6521 1.9650 -0.8744 35 1 1.7017 1.9476 0.9047 36 1 2.8031 0.1932 -2.4155 37 1 2.6659 1.9543 -2.6346 38 1 5.4606 0.8328 -6.2385 39 1 2.6027 0.2662 -8.9203 40 1 4.0613 1.2853 -8.8740 41 1 4.1987 -0.4758 -8.6547 42 1 3.6680 -0.5056 1.6586 43 1 4.6735 0.2630 2.9282 44 1 1.7252 0.5611 2.3775 45 1 2.6056 0.7120 3.9237 46 1 -0.3714 1.1760 4.4687 47 1 4.6478 3.0799 2.7115 48 1 3.6733 3.6441 1.3196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567684526.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:35 Heat of formation + Delta-G solvation = 31.683536 kcal Electronic energy + Delta-G solvation = -30535.341097 eV Core-core repulsion = 26402.949786 eV Total energy + Delta-G solvation = -4132.391311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.08041 -40.30428 -38.83959 -37.38077 -35.02737 -34.08394 -32.99411 -32.67941 -31.82092 -29.59488 -28.74101 -28.05162 -27.24181 -25.63802 -24.36433 -23.60082 -22.04831 -21.30030 -20.55859 -20.11753 -18.72852 -18.11228 -18.02898 -17.16851 -17.02487 -16.63723 -16.17522 -15.90744 -14.75649 -14.64786 -14.46235 -14.27136 -14.15833 -13.82600 -13.82036 -13.64277 -13.28276 -13.06044 -12.83798 -12.76366 -12.41548 -12.04651 -11.94569 -11.78727 -11.57676 -11.34845 -11.25283 -11.09751 -10.99041 -10.91802 -10.61230 -10.33516 -10.21590 -10.14343 -9.95918 -9.74192 -9.71183 -9.44702 -9.34007 -8.71602 -8.29488 -6.88216 -5.79771 -3.14272 1.19106 2.09193 2.27851 2.69244 2.87870 3.35216 3.41023 3.41184 3.45847 4.00862 4.42728 4.48563 4.55726 4.71411 4.91408 4.95735 4.98579 4.98685 5.25462 5.27575 5.35940 5.39525 5.39863 5.41855 5.51425 5.63736 5.65542 5.67098 5.83566 5.88455 6.09226 6.16003 6.26046 6.31592 6.43267 6.47712 6.57194 6.63860 6.69065 6.74468 6.85083 7.07434 7.49114 7.54231 7.69912 7.76089 8.05908 8.15994 8.32053 9.13262 9.72297 10.37579 11.30673 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.002828 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.876317 B = 9897.249064 C =10622.024870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.079 3.921 4 N -0.578 5.578 5 C 0.516 3.484 6 O -0.534 6.534 7 C 0.047 3.953 8 O -0.258 6.258 9 C 0.214 3.786 10 C -0.234 4.234 11 C -0.012 4.012 12 C -0.074 4.074 13 O 0.099 5.901 14 N -0.409 5.409 15 C 0.125 3.875 16 H 0.101 0.899 17 C -0.158 4.158 18 C 0.167 3.833 19 N -0.602 5.602 20 C -0.234 4.234 21 H 0.077 0.923 22 C -0.002 4.002 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.124 3.876 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.145 0.855 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.178 0.822 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.253 0.747 47 H 0.033 0.967 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -4.641 -20.343 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C -0.043 4.043 4 N -0.310 5.310 5 C 0.302 3.698 6 O -0.411 6.411 7 C -0.032 4.032 8 O -0.163 6.163 9 C 0.016 3.984 10 C -0.256 4.256 11 C -0.076 4.076 12 C -0.132 4.132 13 O 0.038 5.962 14 N -0.137 5.137 15 C 0.021 3.979 16 H 0.119 0.881 17 C -0.198 4.198 18 C 0.043 3.957 19 N -0.329 5.329 20 C -0.362 4.362 21 H 0.095 0.905 22 C -0.199 4.199 23 N -0.565 5.565 24 Si 0.739 3.261 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.002 4.002 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.162 0.838 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.196 0.804 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.047 -4.559 -19.384 20.320 hybrid contribution -0.182 0.591 0.347 0.709 sum 3.864 -3.968 -19.037 19.826 Atomic orbital electron populations 1.21656 0.94927 1.01395 1.02522 1.22057 0.96748 0.97146 1.01768 1.22367 0.77740 0.97631 1.06579 1.47727 1.07659 1.70697 1.04898 1.19837 0.87905 0.77661 0.84368 1.90697 1.13841 1.50148 1.86383 1.22667 0.91914 1.04531 0.84052 1.86266 1.32221 1.87295 1.10500 1.22082 0.88711 0.99430 0.88141 1.21779 1.02122 1.13253 0.88404 1.24341 0.84826 1.01018 0.97424 1.20370 1.04436 1.04086 0.84275 1.84805 1.30830 1.68074 1.12442 1.74196 1.17228 1.26743 0.95563 1.22294 0.95687 0.97397 0.82532 0.88130 1.23320 1.01055 0.97439 0.97942 1.21404 0.92549 0.83220 0.98555 1.44601 1.19162 1.02749 1.66403 1.18986 0.97045 0.89025 1.31100 0.90515 1.24758 0.98427 0.96096 1.00641 1.69941 1.29356 1.10558 1.46602 0.86251 0.81349 0.79824 0.78639 1.21144 1.21607 1.21229 1.21915 0.90351 0.94352 0.93631 0.93121 0.90854 0.93452 0.93725 0.90295 0.92277 0.83766 0.88462 0.88765 0.80447 0.89633 0.88922 0.88928 0.91687 0.91269 0.91953 0.94006 0.93617 0.94946 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 37.16 0.37 -1.88 16 2 C -0.14 -2.19 5.31 -26.73 -0.14 -2.33 16 3 C 0.08 1.36 4.16 -4.04 -0.02 1.34 16 4 N -0.58 -10.11 2.53 -163.68 -0.41 -10.53 16 5 C 0.52 9.13 7.70 -10.99 -0.08 9.05 16 6 O -0.53 -11.00 15.89 -14.35 -0.23 -11.22 16 7 C 0.05 0.71 4.81 36.01 0.17 0.88 16 8 O -0.26 -4.14 9.74 -38.72 -0.38 -4.52 16 9 C 0.21 2.99 8.01 -16.66 -0.13 2.86 16 10 C -0.23 -2.43 11.10 -39.23 -0.44 -2.86 16 11 C -0.01 -0.11 7.48 -35.37 -0.26 -0.37 16 12 C -0.07 -0.27 10.45 36.00 0.38 0.11 16 13 O 0.10 1.13 11.19 17.08 0.19 1.32 16 14 N -0.41 -5.66 11.54 30.38 0.35 -5.31 16 15 C 0.12 2.28 3.67 -65.78 -0.24 2.04 16 16 H 0.10 1.84 7.02 -51.93 -0.36 1.47 16 17 C -0.16 -2.90 5.99 -24.90 -0.15 -3.05 16 18 C 0.17 3.71 4.15 -3.07 -0.01 3.70 16 19 N -0.60 -14.10 1.91 -170.07 -0.33 -14.43 16 20 C -0.23 -6.04 9.90 -15.06 -0.15 -6.19 16 21 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 22 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 23 N -0.92 -24.80 10.31 55.49 0.57 -24.23 16 24 Si 0.91 21.09 29.55 -169.99 -5.02 16.06 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.12 2.52 6.54 -2.53 -0.02 2.50 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.64 6.32 -51.93 -0.33 0.31 16 33 H 0.08 1.35 4.72 -51.93 -0.25 1.11 16 34 H 0.06 0.92 6.71 -51.93 -0.35 0.57 16 35 H 0.14 3.01 4.31 -51.93 -0.22 2.79 16 36 H 0.10 1.38 6.36 -51.93 -0.33 1.05 16 37 H 0.09 1.34 7.29 -51.93 -0.38 0.96 16 38 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.06 1.12 6.77 -51.93 -0.35 0.77 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.45 4.44 -51.93 -0.23 1.22 16 45 H 0.04 1.06 7.51 -51.93 -0.39 0.67 16 46 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -30.83 377.57 -7.35 -38.18 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.96 Total: 3.33 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -0.82 Total: 5.65 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.18 Total: -54.50 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.41 Total: -14.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.83 -7.35 -38.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567684526.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.861 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds