Wall clock time and date at job start Tue Mar 31 2020 19:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46937 * 2 1 4 4 N 1.46495 * 109.47061 * 181.69493 * 3 2 1 5 5 C 1.34777 * 120.00016 * 84.66087 * 4 3 2 6 6 O 1.21284 * 120.00047 * 175.13505 * 5 4 3 7 7 C 1.50700 * 120.00080 * 355.13125 * 5 4 3 8 8 O 1.42904 * 109.47357 * 180.02562 * 7 5 4 9 9 C 1.35701 * 117.00300 * 179.97438 * 8 7 5 10 10 C 1.41929 * 126.88034 * 179.70442 * 9 8 7 11 11 C 1.35274 * 103.96148 * 179.91530 * 10 9 8 12 12 C 1.50696 * 126.70851 * 180.11484 * 11 10 9 13 13 O 1.34079 * 106.58102 * 0.35008 * 11 10 9 14 14 N 1.20914 * 111.71606 * 359.76452 * 13 11 10 15 15 C 1.46500 * 120.00042 * 264.65709 * 4 3 2 16 16 H 1.08999 * 110.88797 * 180.30860 * 15 4 3 17 17 C 1.55153 * 111.00172 * 56.42685 * 15 4 3 18 18 C 1.54325 * 102.94142 * 277.42492 * 17 15 4 19 19 N 1.47017 * 107.27301 * 337.81048 * 18 17 15 20 20 C 1.36936 * 125.65166 * 178.89400 * 19 18 17 21 21 H 1.08000 * 119.99982 * 180.02562 * 20 19 18 22 22 C 1.38814 * 119.99897 * 0.02562 * 20 19 18 23 23 N 1.31616 * 119.99770 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00284 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47215 * 59.99785 * 24 22 20 26 26 H 1.48497 * 109.47197 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47083 * 300.00166 * 24 22 20 28 28 C 1.47431 * 108.70310 * 358.93677 * 19 18 17 29 29 H 1.09002 * 109.46630 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47517 * 300.00460 * 1 2 3 31 31 H 1.08997 * 109.46683 * 60.00483 * 1 2 3 32 32 H 1.09002 * 109.47760 * 240.00155 * 2 1 3 33 33 H 1.08997 * 109.47180 * 119.99338 * 2 1 3 34 34 H 1.08999 * 109.46900 * 301.69064 * 3 2 1 35 35 H 1.08992 * 109.47454 * 61.69195 * 3 2 1 36 36 H 1.08994 * 109.47454 * 300.00043 * 7 5 4 37 37 H 1.09001 * 109.46970 * 60.00781 * 7 5 4 38 38 H 1.07997 * 128.01931 * 0.04259 * 10 9 8 39 39 H 1.09004 * 109.47325 * 180.26023 * 12 11 10 40 40 H 1.08996 * 109.47281 * 300.25808 * 12 11 10 41 41 H 1.09003 * 109.47469 * 60.26378 * 12 11 10 42 42 H 1.08996 * 110.72563 * 35.79502 * 17 15 4 43 43 H 1.09007 * 110.71968 * 158.89080 * 17 15 4 44 44 H 1.08998 * 109.88069 * 97.22814 * 18 17 15 45 45 H 1.08999 * 109.88454 * 218.39114 * 18 17 15 46 46 H 0.97001 * 120.00236 * 180.02562 * 23 22 20 47 47 H 1.08997 * 110.36686 * 265.28851 * 28 19 18 48 48 H 1.09001 * 110.36433 * 142.96294 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5044 1.4428 -0.0409 5 6 4.1456 1.3458 -1.2223 6 8 5.3544 1.4346 -1.2654 7 6 3.3605 1.1268 -2.4900 8 8 4.2578 1.0580 -3.6001 9 6 3.7082 0.8621 -4.8253 10 6 4.3971 0.7671 -6.0625 11 6 3.4129 0.5723 -6.9699 12 6 3.5805 0.4001 -8.4576 13 8 2.2588 0.5676 -6.2875 14 7 2.4388 0.7291 -5.1028 15 6 4.2718 1.5486 1.2025 16 1 5.3428 1.5399 1.0001 17 6 3.8838 0.4194 2.1933 18 6 2.6092 0.9720 2.8652 19 7 2.6322 2.4337 2.7094 20 6 1.6664 3.2986 3.1501 21 1 1.7765 4.3603 2.9856 22 6 0.5458 2.8108 3.8083 23 7 0.4119 1.5170 4.0091 24 14 -0.7721 3.9906 4.4089 25 1 -1.3314 4.7377 3.2537 26 1 -1.8564 3.2245 5.0741 27 1 -0.1764 4.9475 5.3757 28 6 3.8669 2.8140 1.9991 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8935 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6521 1.9650 -0.8744 35 1 1.7017 1.9476 0.9047 36 1 2.8031 0.1932 -2.4155 37 1 2.6659 1.9543 -2.6346 38 1 5.4606 0.8328 -6.2385 39 1 2.6027 0.2662 -8.9203 40 1 4.0613 1.2853 -8.8740 41 1 4.1987 -0.4758 -8.6547 42 1 3.6680 -0.5056 1.6586 43 1 4.6735 0.2630 2.9282 44 1 1.7252 0.5611 2.3775 45 1 2.6056 0.7120 3.9237 46 1 -0.3714 1.1760 4.4687 47 1 4.6478 3.0799 2.7115 48 1 3.6733 3.6441 1.3196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567684526.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:34 Heat of formation + Delta-G solvation = 13.715570 kcal Electronic energy + Delta-G solvation = -30536.120247 eV Core-core repulsion = 26402.949786 eV Total energy + Delta-G solvation = -4133.170461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.95893 -41.71975 -40.09130 -38.88891 -36.56710 -34.80436 -34.60841 -33.57291 -33.40791 -31.30973 -30.09053 -28.96134 -28.46739 -27.14340 -26.15553 -24.48902 -23.22886 -22.61249 -21.93251 -21.78190 -20.13623 -19.15257 -18.96427 -18.90078 -18.22929 -17.81877 -17.40100 -17.25036 -16.67319 -16.05834 -15.78949 -15.66896 -15.52942 -14.91604 -14.79142 -14.54387 -14.27471 -14.17163 -13.94306 -13.90172 -13.80290 -13.57503 -13.22586 -13.05147 -12.96062 -12.90628 -12.78011 -12.65767 -12.49393 -12.12799 -12.10082 -12.04299 -11.92718 -11.78653 -11.55158 -11.48035 -10.92068 -10.65693 -10.50268 -10.28099 -9.80581 -8.78951 -7.80623 -5.15490 0.45001 1.13781 1.18242 1.30087 1.49179 1.49891 1.55866 2.09092 2.32648 2.51026 3.09029 3.21232 3.38569 3.64472 3.74801 3.77372 3.84392 3.87898 3.97967 3.99093 4.05795 4.17581 4.26677 4.37450 4.38921 4.58185 4.60351 4.69044 4.78953 4.80941 4.82585 4.87897 4.90957 4.92761 4.97438 5.04758 5.23305 5.28473 5.31211 5.37108 5.50622 5.58890 5.70457 5.81037 5.86618 6.22666 6.29001 6.90073 7.14313 7.22850 7.78488 8.43111 9.27841 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.002828 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.876317 B = 9897.249064 C =10622.024870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 C 0.085 3.915 4 N -0.576 5.576 5 C 0.518 3.482 6 O -0.564 6.564 7 C 0.056 3.944 8 O -0.278 6.278 9 C 0.186 3.814 10 C -0.249 4.249 11 C 0.009 3.991 12 C -0.074 4.074 13 O 0.093 5.907 14 N -0.433 5.433 15 C 0.133 3.867 16 H 0.108 0.892 17 C -0.144 4.144 18 C 0.178 3.822 19 N -0.613 5.613 20 C -0.241 4.241 21 H 0.076 0.924 22 C -0.048 4.048 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.278 1.278 26 H -0.296 1.296 27 H -0.285 1.285 28 C 0.124 3.876 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.197 0.803 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.050 0.950 45 H 0.003 0.997 46 H 0.247 0.753 47 H 0.039 0.961 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 -4.949 -23.135 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C -0.037 4.037 4 N -0.308 5.308 5 C 0.306 3.694 6 O -0.443 6.443 7 C -0.022 4.022 8 O -0.184 6.184 9 C -0.011 4.011 10 C -0.271 4.271 11 C -0.055 4.055 12 C -0.130 4.130 13 O 0.033 5.967 14 N -0.160 5.160 15 C 0.029 3.971 16 H 0.126 0.874 17 C -0.183 4.183 18 C 0.054 3.946 19 N -0.340 5.340 20 C -0.370 4.370 21 H 0.094 0.906 22 C -0.242 4.242 23 N -0.585 5.585 24 Si 0.795 3.205 25 H -0.205 1.205 26 H -0.222 1.222 27 H -0.212 1.212 28 C -0.002 4.002 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.215 0.785 39 H 0.117 0.883 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.022 0.978 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.305 -4.857 -22.197 23.126 hybrid contribution -0.238 0.706 1.099 1.328 sum 4.067 -4.151 -21.098 21.883 Atomic orbital electron populations 1.21579 0.94522 1.02110 1.01572 1.21965 0.96982 0.96092 1.01927 1.22241 0.77444 0.98474 1.05590 1.47732 1.07743 1.70489 1.04793 1.20203 0.87614 0.76652 0.84909 1.90678 1.15243 1.51582 1.86833 1.22541 0.91354 1.05378 0.82956 1.86211 1.32927 1.87914 1.11358 1.22511 0.89626 1.00814 0.88117 1.22153 1.03503 1.14111 0.87291 1.25185 0.83113 0.98054 0.99100 1.20682 1.05906 1.05853 0.80599 1.84757 1.32097 1.67912 1.11930 1.74174 1.17459 1.27582 0.96819 1.22153 0.96069 0.96110 0.82732 0.87444 1.23193 0.99389 0.97724 0.98011 1.21168 0.94180 0.82874 0.96388 1.44726 1.19701 1.03084 1.66526 1.19227 0.97705 0.89448 1.30639 0.90626 1.25388 1.00177 0.97363 1.01314 1.70117 1.29403 1.11745 1.47243 0.85356 0.78992 0.78060 0.78088 1.20456 1.22189 1.21155 1.21988 0.89283 0.95248 0.93650 0.91611 0.94259 0.91807 0.91640 0.91857 0.90571 0.87189 0.87309 0.87885 0.78543 0.88285 0.86930 0.86876 0.90294 0.89848 0.93151 0.97846 0.94365 0.94357 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.91 71.98 0.71 -3.46 16 2 C -0.13 -4.02 5.31 30.60 0.16 -3.86 16 3 C 0.08 2.87 4.16 86.38 0.36 3.23 16 4 N -0.58 -19.75 2.53 -790.15 -2.00 -21.74 16 5 C 0.52 17.88 7.70 87.66 0.68 18.55 16 6 O -0.56 -22.90 15.89 15.99 0.25 -22.64 16 7 C 0.06 1.63 4.81 71.24 0.34 1.98 16 8 O -0.28 -8.74 9.74 -71.18 -0.69 -9.44 16 9 C 0.19 5.02 8.01 85.79 0.69 5.70 16 10 C -0.25 -4.71 11.10 22.50 0.25 -4.46 16 11 C 0.01 0.13 7.48 25.00 0.19 0.32 16 12 C -0.07 -0.25 10.45 71.23 0.74 0.50 16 13 O 0.09 1.97 11.19 71.28 0.80 2.77 16 14 N -0.43 -11.48 11.54 -172.60 -1.99 -13.47 16 15 C 0.13 4.81 3.67 46.38 0.17 4.98 16 16 H 0.11 3.81 7.02 -2.39 -0.02 3.79 16 17 C -0.14 -5.20 5.99 31.78 0.19 -5.01 16 18 C 0.18 8.10 4.15 86.73 0.36 8.46 16 19 N -0.61 -29.25 1.91 -691.99 -1.32 -30.57 16 20 C -0.24 -12.70 9.90 84.03 0.83 -11.87 16 21 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 22 C -0.05 -2.56 5.49 84.86 0.47 -2.09 16 23 N -0.94 -52.10 10.31 21.65 0.22 -51.87 16 24 Si 0.97 43.94 29.55 68.60 2.03 45.96 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 28 C 0.12 5.05 6.54 86.85 0.57 5.61 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 1.74 6.32 -2.39 -0.02 1.72 16 33 H 0.06 2.15 4.72 -2.39 -0.01 2.13 16 34 H 0.08 2.29 6.71 -2.39 -0.02 2.28 16 35 H 0.11 4.65 4.31 -2.39 -0.01 4.64 16 36 H 0.11 2.90 6.36 -2.39 -0.02 2.89 16 37 H 0.10 2.81 7.29 -2.39 -0.02 2.79 16 38 H 0.20 2.74 8.06 -2.91 -0.02 2.71 16 39 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.08 2.64 6.77 -2.39 -0.02 2.63 16 43 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 44 H 0.05 2.41 4.44 -2.39 -0.01 2.40 16 45 H 0.00 0.17 7.51 -2.39 -0.02 0.16 16 46 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 47 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -68.35 377.57 4.99 -63.36 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.98 Total: 19.06 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 6.71 Total: 18.58 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -5.09 Total: -117.66 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: 0.36 Total: -29.31 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -68.35 4.99 -63.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567684526.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.080 kcal (2) G-P(sol) polarization free energy of solvation -68.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds