Wall clock time and date at job start Tue Mar 31 2020 19:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47026 * 2 1 4 4 N 1.46504 * 109.46880 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00201 * 89.99725 * 4 3 2 6 6 O 1.21281 * 120.00109 * 179.97438 * 5 4 3 7 7 C 1.50700 * 119.99895 * 0.02562 * 5 4 3 8 8 O 1.42903 * 109.47026 * 179.97438 * 7 5 4 9 9 C 1.35715 * 116.99769 * 180.02562 * 8 7 5 10 10 C 1.41932 * 126.87749 * 179.97438 * 9 8 7 11 11 C 1.35270 * 103.95733 * 180.02562 * 10 9 8 12 12 C 1.50706 * 126.70375 * 179.97438 * 11 10 9 13 13 O 1.34079 * 106.58221 * 359.97438 * 11 10 9 14 14 N 1.20913 * 111.72018 * 359.97438 * 13 11 10 15 15 C 1.46496 * 119.99866 * 270.00140 * 4 3 2 16 16 H 1.08998 * 110.64571 * 1.68753 * 15 4 3 17 17 C 1.55161 * 110.72278 * 125.02213 * 15 4 3 18 18 C 1.54907 * 101.58448 * 153.86368 * 17 15 4 19 19 N 1.47430 * 104.83194 * 322.99343 * 18 17 15 20 20 C 1.36940 * 125.64541 * 204.09011 * 19 18 17 21 21 H 1.08005 * 119.99232 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00123 * 0.04397 * 20 19 18 23 23 N 1.31616 * 120.00214 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99616 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47539 * 59.99624 * 24 22 20 26 26 H 1.48500 * 109.47038 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47286 * 299.99505 * 24 22 20 28 28 C 1.47020 * 108.70338 * 24.12890 * 19 18 17 29 29 H 1.09002 * 109.46509 * 300.00067 * 1 2 3 30 30 H 1.08999 * 109.46856 * 59.99830 * 1 2 3 31 31 H 1.08996 * 109.47246 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46509 * 239.99933 * 2 1 3 33 33 H 1.08991 * 109.46952 * 120.00449 * 2 1 3 34 34 H 1.08998 * 109.47095 * 60.00725 * 3 2 1 35 35 H 1.08999 * 109.47441 * 299.99811 * 3 2 1 36 36 H 1.09001 * 109.47418 * 59.99261 * 7 5 4 37 37 H 1.09005 * 109.47141 * 299.99191 * 7 5 4 38 38 H 1.08003 * 128.01590 * 0.02919 * 10 9 8 39 39 H 1.09006 * 109.46731 * 180.02562 * 12 11 10 40 40 H 1.08996 * 109.47228 * 300.02011 * 12 11 10 41 41 H 1.08995 * 109.47130 * 60.02328 * 12 11 10 42 42 H 1.09000 * 111.00820 * 271.94270 * 17 15 4 43 43 H 1.09007 * 111.00124 * 35.79309 * 17 15 4 44 44 H 1.09003 * 110.36704 * 204.15751 * 18 17 15 45 45 H 1.08997 * 110.36406 * 81.82979 * 18 17 15 46 46 H 0.96996 * 120.00295 * 179.97438 * 23 22 20 47 47 H 1.09004 * 109.88012 * 239.52861 * 28 19 18 48 48 H 1.08996 * 109.88351 * 118.35925 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1785 1.4425 -1.1680 6 8 5.3913 1.4430 -1.1685 7 6 3.4244 1.4433 -2.4728 8 8 4.3526 1.4438 -3.5594 9 6 3.8334 1.4451 -4.8133 10 6 4.5564 1.4464 -6.0346 11 6 3.5930 1.4479 -6.9841 12 6 3.7996 1.4502 -8.4770 13 8 2.4185 1.4469 -6.3375 14 7 2.5682 1.4445 -5.1377 15 6 4.2380 1.4422 1.2678 16 1 3.5476 1.4120 2.1106 17 6 5.2338 0.2537 1.3262 18 6 6.3055 0.7937 2.3058 19 7 6.4180 2.2290 1.9884 20 6 7.5100 3.0176 2.2351 21 1 7.4933 4.0630 1.9640 22 6 8.6383 2.4735 2.8331 23 7 8.6585 1.1996 3.1636 24 14 10.1280 3.5492 3.1690 25 1 9.7421 4.6604 4.0753 26 1 11.1925 2.7350 3.8086 27 1 10.6342 4.1073 1.8892 28 6 5.1634 2.6735 1.3639 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.7980 2.3335 -2.5300 37 1 2.7975 0.5535 -2.5307 38 1 5.6275 1.4461 -6.1735 39 1 2.8314 1.4514 -8.9777 40 1 4.3588 2.3404 -8.7650 41 1 4.3580 0.5605 -8.7678 42 1 4.7534 -0.6393 1.7261 43 1 5.6654 0.0570 0.3448 44 1 7.2589 0.2924 2.1390 45 1 5.9796 0.6577 3.3370 46 1 9.4470 0.8193 3.5811 47 1 5.3642 3.0650 0.3666 48 1 4.6953 3.4420 1.9789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567684527.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:41 Heat of formation + Delta-G solvation = 33.249688 kcal Electronic energy + Delta-G solvation = -29946.588967 eV Core-core repulsion = 25814.265569 eV Total energy + Delta-G solvation = -4132.323398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.09855 -40.36985 -38.77248 -36.65219 -36.00747 -34.09288 -33.06820 -32.72569 -31.83418 -29.52231 -28.67962 -28.05949 -27.09192 -25.85689 -24.31206 -23.61666 -22.22501 -21.65450 -20.70309 -20.06711 -18.81861 -18.05835 -17.95428 -17.11514 -16.92969 -16.77483 -16.18711 -15.67223 -14.93528 -14.70993 -14.48735 -14.44623 -14.15609 -13.95581 -13.79447 -13.65573 -13.50198 -13.16755 -12.98782 -12.78147 -12.47765 -12.35956 -12.11397 -11.94659 -11.65151 -11.53082 -11.38322 -11.30690 -10.93763 -10.91063 -10.77639 -10.70096 -10.45009 -10.05180 -9.75355 -9.74750 -9.48031 -9.38390 -9.13707 -8.53838 -8.36573 -6.69013 -5.52767 -2.93136 1.16995 2.07453 2.22978 2.72853 2.85002 3.29436 3.48713 3.52285 3.54193 3.97788 4.33090 4.52624 4.60515 4.64133 4.71550 4.74701 4.89212 4.90971 4.94462 4.99097 5.09085 5.21569 5.25693 5.39866 5.40558 5.43142 5.48432 5.60326 5.64516 5.65180 5.80228 5.82252 5.84083 5.93651 6.07486 6.28414 6.57030 6.59716 6.67869 6.79326 6.83328 7.19712 7.49260 7.64794 7.74408 7.97811 8.02199 8.35627 8.49502 9.34292 9.95430 10.60419 11.51353 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.002998 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.376199 B = 9337.612041 C =11377.312776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.104 3.896 4 N -0.601 5.601 5 C 0.508 3.492 6 O -0.481 6.481 7 C 0.047 3.953 8 O -0.254 6.254 9 C 0.217 3.783 10 C -0.232 4.232 11 C -0.011 4.011 12 C -0.074 4.074 13 O 0.096 5.904 14 N -0.414 5.414 15 C 0.137 3.863 16 H 0.092 0.908 17 C -0.157 4.157 18 C 0.158 3.842 19 N -0.596 5.596 20 C -0.215 4.215 21 H 0.075 0.925 22 C -0.013 4.013 23 N -0.924 5.924 24 Si 0.914 3.086 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.132 3.868 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.179 0.821 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.010 0.990 46 H 0.251 0.749 47 H 0.035 0.965 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.319 -2.581 -18.777 26.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.019 4.019 4 N -0.336 5.336 5 C 0.293 3.707 6 O -0.353 6.353 7 C -0.032 4.032 8 O -0.158 6.158 9 C 0.019 3.981 10 C -0.254 4.254 11 C -0.075 4.075 12 C -0.132 4.132 13 O 0.036 5.964 14 N -0.143 5.143 15 C 0.035 3.965 16 H 0.110 0.890 17 C -0.196 4.196 18 C 0.033 3.967 19 N -0.322 5.322 20 C -0.343 4.343 21 H 0.092 0.908 22 C -0.208 4.208 23 N -0.573 5.573 24 Si 0.745 3.255 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.005 3.995 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.197 0.803 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.125 0.875 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -18.241 -2.580 -17.870 25.666 hybrid contribution 1.176 0.553 0.199 1.315 sum -17.065 -2.027 -17.671 24.650 Atomic orbital electron populations 1.21706 0.95025 1.02031 1.01973 1.22005 0.96135 0.97145 1.03090 1.21749 0.79704 0.97047 1.03416 1.47880 1.06095 1.73981 1.05644 1.19769 0.88244 0.78541 0.84144 1.90879 1.12763 1.45290 1.86357 1.22639 0.91528 1.04056 0.84929 1.86333 1.31679 1.88771 1.09031 1.22096 0.88778 0.99456 0.87794 1.21833 1.02230 1.13340 0.87970 1.24330 0.84439 1.01118 0.97609 1.20378 1.04214 1.04443 0.84139 1.84777 1.30275 1.69263 1.12060 1.74137 1.17768 1.28029 0.94364 1.22255 0.93289 0.98351 0.82619 0.89040 1.23459 0.97743 0.95347 1.03078 1.21844 0.97851 0.84662 0.92320 1.44282 1.11039 1.06576 1.70259 1.19011 0.90935 0.91921 1.32442 0.90751 1.24757 0.98232 0.96383 1.01443 1.69782 1.28791 1.10980 1.47786 0.86148 0.82420 0.79064 0.77853 1.21341 1.21623 1.21226 1.21490 0.87783 0.93360 0.96853 0.92390 0.92605 0.92430 0.91967 0.90953 0.89686 0.90766 0.89071 0.88999 0.80321 0.89673 0.88870 0.88875 0.92858 0.89965 0.87523 0.97223 0.93824 0.94700 0.96493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.15 -1.35 6.26 -26.73 -0.17 -1.52 16 3 C 0.10 1.08 5.19 -4.04 -0.02 1.06 16 4 N -0.60 -9.13 2.54 -164.03 -0.42 -9.55 16 5 C 0.51 8.82 6.85 -10.99 -0.08 8.74 16 6 O -0.48 -10.94 12.85 -14.35 -0.18 -11.12 16 7 C 0.05 0.66 4.69 36.01 0.17 0.83 16 8 O -0.25 -4.09 9.74 -38.76 -0.38 -4.47 16 9 C 0.22 2.98 8.01 -16.66 -0.13 2.84 16 10 C -0.23 -2.48 11.10 -39.23 -0.44 -2.92 16 11 C -0.01 -0.10 7.48 -35.36 -0.26 -0.36 16 12 C -0.07 -0.27 10.45 36.01 0.38 0.10 16 13 O 0.10 1.03 11.19 17.07 0.19 1.22 16 14 N -0.41 -5.34 11.54 30.38 0.35 -4.99 16 15 C 0.14 2.53 3.44 -66.09 -0.23 2.30 16 16 H 0.09 1.48 7.88 -51.93 -0.41 1.07 16 17 C -0.16 -3.30 6.40 -24.58 -0.16 -3.46 16 18 C 0.16 4.12 5.89 -2.53 -0.01 4.11 16 19 N -0.60 -16.48 3.39 -170.07 -0.58 -17.06 16 20 C -0.21 -6.41 10.27 -15.06 -0.15 -6.57 16 21 H 0.07 2.16 7.83 -52.48 -0.41 1.75 16 22 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 23 N -0.92 -28.34 10.09 55.49 0.56 -27.78 16 24 Si 0.91 23.28 29.55 -169.99 -5.02 18.26 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 C 0.13 3.03 6.49 -3.06 -0.02 3.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.61 7.22 -51.93 -0.38 0.24 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.79 7.96 -51.93 -0.41 0.37 16 35 H 0.07 0.65 6.44 -51.93 -0.33 0.32 16 36 H 0.09 1.10 7.40 -51.93 -0.38 0.71 16 37 H 0.09 1.10 7.19 -51.93 -0.37 0.73 16 38 H 0.18 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.92 5.81 -51.93 -0.30 1.61 16 44 H 0.11 3.15 5.87 -51.93 -0.31 2.85 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.04 0.87 6.28 -51.93 -0.33 0.54 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 387.81 15.07 5.84 5.84 Total: -1.00 -36.87 387.81 -7.91 -44.78 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -7.42 Total: -2.10 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -0.85 Total: 6.97 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.08 Total: -59.37 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.37 Total: -14.37 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.87 -7.91 -44.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567684527.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.027 kcal (2) G-P(sol) polarization free energy of solvation -36.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds