Wall clock time and date at job start Tue Mar 31 2020 19:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 N 1.46500 * 109.46862 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00344 * 83.76066 * 4 3 2 6 6 O 1.21619 * 120.00233 * 185.47539 * 5 4 3 7 7 C 1.47371 * 119.99688 * 5.47833 * 5 4 3 8 8 C 1.35914 * 126.41478 * 174.35437 * 7 5 4 9 9 O 1.34483 * 107.08875 * 179.76852 * 8 7 5 10 10 C 1.34204 * 108.25042 * 0.23393 * 9 8 7 11 11 O 1.35350 * 125.45293 * 180.02562 * 10 9 8 12 12 C 1.42909 * 116.99541 * 359.97438 * 11 10 9 13 13 C 1.52997 * 109.46740 * 179.97438 * 12 11 10 14 14 N 1.30553 * 109.10280 * 359.97438 * 10 9 8 15 15 C 1.46504 * 119.99977 * 263.75916 * 4 3 2 16 16 H 1.08995 * 110.88613 * 10.13924 * 15 4 3 17 17 C 1.55158 * 111.00358 * 246.25952 * 15 4 3 18 18 C 1.54324 * 102.94005 * 277.42678 * 17 15 4 19 19 N 1.47016 * 107.27388 * 337.80712 * 18 17 15 20 20 C 1.36945 * 125.65214 * 178.98517 * 19 18 17 21 21 H 1.07999 * 120.00311 * 185.09040 * 20 19 18 22 22 C 1.38810 * 119.99591 * 5.09480 * 20 19 18 23 23 N 1.31623 * 120.00141 * 5.11805 * 22 20 19 24 24 Si 1.86803 * 119.99744 * 185.12172 * 22 20 19 25 25 H 1.48500 * 109.47004 * 94.99798 * 24 22 20 26 26 H 1.48497 * 109.46833 * 214.99181 * 24 22 20 27 27 H 1.48496 * 109.47092 * 334.99791 * 24 22 20 28 28 C 1.47424 * 108.70450 * 358.94245 * 19 18 17 29 29 H 1.09004 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47154 * 299.99264 * 1 2 3 31 31 H 1.08995 * 109.47483 * 59.99224 * 1 2 3 32 32 H 1.09000 * 109.46663 * 240.00711 * 2 1 3 33 33 H 1.08995 * 109.47483 * 120.00776 * 2 1 3 34 34 H 1.09000 * 109.46858 * 60.00830 * 3 2 1 35 35 H 1.08995 * 109.47661 * 300.00666 * 3 2 1 36 36 H 1.07999 * 126.45076 * 0.03751 * 8 7 5 37 37 H 1.09004 * 109.46556 * 299.99327 * 12 11 10 38 38 H 1.08998 * 109.47383 * 59.99496 * 12 11 10 39 39 H 1.08996 * 109.47243 * 299.99358 * 13 12 11 40 40 H 1.09007 * 109.47397 * 59.99907 * 13 12 11 41 41 H 1.08999 * 109.46966 * 179.97438 * 13 12 11 42 42 H 1.08999 * 110.72510 * 35.78783 * 17 15 4 43 43 H 1.09004 * 110.72118 * 158.88851 * 17 15 4 44 44 H 1.08999 * 109.88537 * 97.22608 * 18 17 15 45 45 H 1.09002 * 109.88194 * 218.23774 * 18 17 15 46 46 H 0.97000 * 120.00075 * 180.02562 * 23 22 20 47 47 H 1.09003 * 110.36750 * 265.29008 * 28 19 18 48 48 H 1.08994 * 110.37328 * 142.96482 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1784 1.3158 -1.1612 6 8 5.3904 1.2156 -1.1531 7 6 3.4461 1.2987 -2.4399 8 6 3.9943 1.2856 -3.6835 9 8 2.9774 1.2672 -4.5635 10 6 1.8255 1.2743 -3.8749 11 8 0.5860 1.2602 -4.4182 12 6 0.5032 1.2363 -5.8447 13 6 -0.9664 1.2226 -6.2700 14 7 2.0918 1.2958 -2.5969 15 6 4.2380 1.5802 1.2603 16 1 3.5645 1.4930 2.1129 17 6 5.0211 2.9189 1.3050 18 6 6.3111 2.5909 0.5240 19 7 6.4867 1.1318 0.5642 20 6 7.5041 0.4336 -0.0296 21 1 7.5005 -0.6462 -0.0117 22 6 8.5402 1.1139 -0.6546 23 7 8.5986 2.4273 -0.5900 24 14 9.8517 0.1654 -1.5873 25 1 9.4926 0.1100 -3.0272 26 1 11.1616 0.8469 -1.4298 27 1 9.9432 -1.2146 -1.0466 28 6 5.3866 0.5448 1.3508 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 1.8932 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 1.6767 1.9562 0.8901 35 1 1.6766 1.9564 -0.8898 36 1 5.0480 1.2851 -3.9203 37 1 0.9914 2.1219 -6.2517 38 1 0.9989 0.3421 -6.2225 39 1 -1.4542 0.3369 -5.8630 40 1 -1.4625 2.1167 -5.8921 41 1 -1.0296 1.2049 -7.3580 42 1 4.4603 3.7106 0.8082 43 1 5.2502 3.1976 2.3336 44 1 6.2138 2.9241 -0.5093 45 1 7.1635 3.0822 0.9930 46 1 9.3224 2.9027 -1.0271 47 1 5.6929 0.4076 2.3879 48 1 5.0755 -0.4057 0.9174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714856471.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:48 Heat of formation + Delta-G solvation = 41.889256 kcal Electronic energy + Delta-G solvation = -31557.919129 eV Core-core repulsion = 27425.970371 eV Total energy + Delta-G solvation = -4131.948758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.27469 -39.68617 -39.00399 -36.18270 -35.66803 -34.42398 -32.69394 -32.19559 -31.30578 -29.26172 -28.87863 -27.28002 -25.62387 -24.58254 -24.03658 -23.39879 -22.37599 -21.37099 -20.70103 -19.76315 -19.19072 -17.75143 -17.52821 -16.87386 -16.33804 -16.22280 -15.71378 -15.66977 -14.96896 -14.57466 -14.41109 -14.25922 -13.89543 -13.59792 -13.29121 -13.20083 -13.11353 -13.02270 -12.64733 -12.11639 -12.05224 -11.95563 -11.75211 -11.58586 -11.51770 -11.33166 -11.18068 -10.85888 -10.70235 -10.67237 -10.57687 -10.46219 -10.13648 -9.90459 -9.70697 -9.60952 -9.34301 -8.83457 -8.47251 -8.29837 -7.71308 -6.19467 -5.36127 -2.61286 1.42870 1.92280 2.32485 2.80632 3.54814 3.55895 3.60942 3.62633 4.02626 4.44989 4.45565 4.59490 4.76903 4.77917 5.04526 5.20154 5.27105 5.31467 5.34301 5.41067 5.55503 5.58654 5.61782 5.66033 5.71498 5.72717 5.78133 5.92715 5.97891 6.06931 6.14089 6.16361 6.27526 6.35345 6.47341 6.57411 6.65070 6.73475 6.74831 6.83199 6.87510 7.43562 7.65641 7.83713 7.97452 8.10970 8.17130 8.60358 9.13507 9.56101 10.18202 10.85620 11.76383 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012419 B = 0.004173 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.012674 B = 6708.347890 C = 8267.020628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.106 3.894 4 N -0.597 5.597 5 C 0.545 3.455 6 O -0.401 6.401 7 C -0.030 4.030 8 C -0.011 4.011 9 O -0.231 6.231 10 C 0.363 3.637 11 O -0.249 6.249 12 C 0.052 3.948 13 C -0.151 4.151 14 N -0.447 5.447 15 C 0.133 3.867 16 H 0.083 0.917 17 C -0.160 4.160 18 C 0.189 3.811 19 N -0.565 5.565 20 C -0.180 4.180 21 H 0.066 0.934 22 C -0.012 4.012 23 N -0.925 5.925 24 Si 0.899 3.101 25 H -0.296 1.296 26 H -0.296 1.296 27 H -0.286 1.286 28 C 0.131 3.869 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.234 0.766 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.044 0.956 46 H 0.243 0.757 47 H 0.022 0.978 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.585 -0.839 -6.938 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.017 4.017 4 N -0.333 5.333 5 C 0.328 3.672 6 O -0.266 6.266 7 C -0.149 4.149 8 C -0.082 4.082 9 O -0.123 6.123 10 C 0.118 3.882 11 O -0.158 6.158 12 C -0.023 4.023 13 C -0.208 4.208 14 N -0.194 5.194 15 C 0.029 3.971 16 H 0.101 0.899 17 C -0.200 4.200 18 C 0.065 3.935 19 N -0.290 5.290 20 C -0.309 4.309 21 H 0.084 0.916 22 C -0.207 4.207 23 N -0.575 5.575 24 Si 0.732 3.268 25 H -0.224 1.224 26 H -0.223 1.223 27 H -0.212 1.212 28 C 0.003 3.997 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.250 0.750 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.040 0.960 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -20.348 -0.853 -6.597 21.408 hybrid contribution 1.018 -0.524 -1.453 1.850 sum -19.330 -1.377 -8.049 20.985 Atomic orbital electron populations 1.21621 0.95890 1.00924 1.01538 1.21775 0.95391 0.97846 1.01540 1.21923 0.79513 0.96848 1.03399 1.47545 1.05926 1.74155 1.05667 1.17260 0.87574 0.80838 0.81576 1.91706 1.09251 1.41577 1.84097 1.22420 0.87757 1.07967 0.96790 1.25005 0.92215 1.04511 0.86426 1.84343 1.15591 1.72204 1.40146 1.23677 0.79945 0.99041 0.85550 1.86332 1.15273 1.89537 1.24657 1.22983 1.00123 1.02928 0.76301 1.21793 0.93051 1.04038 1.01902 1.71443 1.14213 1.23531 1.10251 1.22307 0.93163 0.97283 0.84334 0.89892 1.23386 0.99767 0.95973 1.00831 1.21090 0.90651 0.84778 0.97002 1.44095 1.24927 1.01960 1.57984 1.18801 0.96492 0.89539 1.26118 0.91636 1.24545 0.98504 0.95475 1.02167 1.69953 1.33215 1.05233 1.49137 0.86262 0.81733 0.78629 0.80209 1.22402 1.22341 1.21186 1.21753 0.88446 0.94689 0.94794 0.93472 0.93336 0.92297 0.92043 0.92938 0.92099 0.87438 0.74970 0.90991 0.91012 0.91069 0.91066 0.89666 0.92494 0.91872 0.94112 0.93800 0.94609 0.96012 0.94698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.91 37.16 0.37 -1.21 16 2 C -0.13 -1.73 5.80 -26.73 -0.15 -1.88 16 3 C 0.11 1.55 4.97 -4.04 -0.02 1.53 16 4 N -0.60 -10.63 2.57 -164.95 -0.42 -11.05 16 5 C 0.55 11.03 7.06 -12.54 -0.09 10.95 16 6 O -0.40 -9.85 8.88 5.26 0.05 -9.81 16 7 C -0.03 -0.53 6.53 -82.98 -0.54 -1.07 16 8 C -0.01 -0.17 11.94 29.90 0.36 0.19 16 9 O -0.23 -3.23 10.20 -17.75 -0.18 -3.41 16 10 C 0.36 5.09 8.98 52.22 0.47 5.56 16 11 O -0.25 -2.87 10.19 -40.97 -0.42 -3.29 16 12 C 0.05 0.40 6.38 37.16 0.24 0.63 16 13 C -0.15 -0.78 10.28 37.16 0.38 -0.40 16 14 N -0.45 -7.00 6.82 -11.71 -0.08 -7.08 16 15 C 0.13 2.43 3.77 -65.78 -0.25 2.18 16 16 H 0.08 1.26 7.90 -51.93 -0.41 0.85 16 17 C -0.16 -3.15 6.52 -24.90 -0.16 -3.32 16 18 C 0.19 4.82 4.24 -3.07 -0.01 4.80 16 19 N -0.56 -14.85 1.73 -170.08 -0.29 -15.15 16 20 C -0.18 -5.23 8.72 -15.06 -0.13 -5.37 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.37 5.46 -17.43 -0.10 -0.46 16 23 N -0.92 -28.36 10.41 55.49 0.58 -27.78 16 24 Si 0.90 23.31 29.56 -169.99 -5.02 18.29 16 25 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 26 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 C 0.13 2.85 6.17 -2.53 -0.02 2.83 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.96 7.27 -51.93 -0.38 0.59 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.78 7.92 -51.93 -0.41 0.37 16 35 H 0.11 1.64 5.15 -51.93 -0.27 1.38 16 36 H 0.23 3.44 8.06 -52.49 -0.42 3.02 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.04 1.16 6.28 -51.93 -0.33 0.84 16 45 H 0.04 1.26 7.10 -51.93 -0.37 0.89 16 46 H 0.24 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 380.10 15.07 5.73 5.73 Total: -1.00 -33.96 380.10 -7.35 -41.31 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -7.63 Total: -2.71 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 0.34 Total: 14.96 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.22 Total: -61.06 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.55 Total: -16.51 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.96 -7.35 -41.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714856471.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.202 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds