Wall clock time and date at job start Tue Mar 31 2020 19:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 N 1.46500 * 109.46862 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00344 * 83.76066 * 4 3 2 6 6 O 1.21619 * 120.00233 * 185.47539 * 5 4 3 7 7 C 1.47371 * 119.99688 * 5.47833 * 5 4 3 8 8 C 1.35914 * 126.41478 * 174.35437 * 7 5 4 9 9 O 1.34483 * 107.08875 * 179.76852 * 8 7 5 10 10 C 1.34204 * 108.25042 * 0.23393 * 9 8 7 11 11 O 1.35350 * 125.45293 * 180.02562 * 10 9 8 12 12 C 1.42909 * 116.99541 * 359.97438 * 11 10 9 13 13 C 1.52997 * 109.46740 * 179.97438 * 12 11 10 14 14 N 1.30553 * 109.10280 * 359.97438 * 10 9 8 15 15 C 1.46504 * 119.99977 * 263.75916 * 4 3 2 16 16 H 1.08995 * 110.88613 * 10.13924 * 15 4 3 17 17 C 1.55158 * 111.00358 * 246.25952 * 15 4 3 18 18 C 1.54324 * 102.94005 * 277.42678 * 17 15 4 19 19 N 1.47016 * 107.27388 * 337.80712 * 18 17 15 20 20 C 1.36945 * 125.65214 * 178.98517 * 19 18 17 21 21 H 1.07999 * 120.00311 * 185.09040 * 20 19 18 22 22 C 1.38810 * 119.99591 * 5.09480 * 20 19 18 23 23 N 1.31623 * 120.00141 * 5.11805 * 22 20 19 24 24 Si 1.86803 * 119.99744 * 185.12172 * 22 20 19 25 25 H 1.48500 * 109.47004 * 94.99798 * 24 22 20 26 26 H 1.48497 * 109.46833 * 214.99181 * 24 22 20 27 27 H 1.48496 * 109.47092 * 334.99791 * 24 22 20 28 28 C 1.47424 * 108.70450 * 358.94245 * 19 18 17 29 29 H 1.09004 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47154 * 299.99264 * 1 2 3 31 31 H 1.08995 * 109.47483 * 59.99224 * 1 2 3 32 32 H 1.09000 * 109.46663 * 240.00711 * 2 1 3 33 33 H 1.08995 * 109.47483 * 120.00776 * 2 1 3 34 34 H 1.09000 * 109.46858 * 60.00830 * 3 2 1 35 35 H 1.08995 * 109.47661 * 300.00666 * 3 2 1 36 36 H 1.07999 * 126.45076 * 0.03751 * 8 7 5 37 37 H 1.09004 * 109.46556 * 299.99327 * 12 11 10 38 38 H 1.08998 * 109.47383 * 59.99496 * 12 11 10 39 39 H 1.08996 * 109.47243 * 299.99358 * 13 12 11 40 40 H 1.09007 * 109.47397 * 59.99907 * 13 12 11 41 41 H 1.08999 * 109.46966 * 179.97438 * 13 12 11 42 42 H 1.08999 * 110.72510 * 35.78783 * 17 15 4 43 43 H 1.09004 * 110.72118 * 158.88851 * 17 15 4 44 44 H 1.08999 * 109.88537 * 97.22608 * 18 17 15 45 45 H 1.09002 * 109.88194 * 218.23774 * 18 17 15 46 46 H 0.97000 * 120.00075 * 180.02562 * 23 22 20 47 47 H 1.09003 * 110.36750 * 265.29008 * 28 19 18 48 48 H 1.08994 * 110.37328 * 142.96482 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1784 1.3158 -1.1612 6 8 5.3904 1.2156 -1.1531 7 6 3.4461 1.2987 -2.4399 8 6 3.9943 1.2856 -3.6835 9 8 2.9774 1.2672 -4.5635 10 6 1.8255 1.2743 -3.8749 11 8 0.5860 1.2602 -4.4182 12 6 0.5032 1.2363 -5.8447 13 6 -0.9664 1.2226 -6.2700 14 7 2.0918 1.2958 -2.5969 15 6 4.2380 1.5802 1.2603 16 1 3.5645 1.4930 2.1129 17 6 5.0211 2.9189 1.3050 18 6 6.3111 2.5909 0.5240 19 7 6.4867 1.1318 0.5642 20 6 7.5041 0.4336 -0.0296 21 1 7.5005 -0.6462 -0.0117 22 6 8.5402 1.1139 -0.6546 23 7 8.5986 2.4273 -0.5900 24 14 9.8517 0.1654 -1.5873 25 1 9.4926 0.1100 -3.0272 26 1 11.1616 0.8469 -1.4298 27 1 9.9432 -1.2146 -1.0466 28 6 5.3866 0.5448 1.3508 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 1.8932 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 1.6767 1.9562 0.8901 35 1 1.6766 1.9564 -0.8898 36 1 5.0480 1.2851 -3.9203 37 1 0.9914 2.1219 -6.2517 38 1 0.9989 0.3421 -6.2225 39 1 -1.4542 0.3369 -5.8630 40 1 -1.4625 2.1167 -5.8921 41 1 -1.0296 1.2049 -7.3580 42 1 4.4603 3.7106 0.8082 43 1 5.2502 3.1976 2.3336 44 1 6.2138 2.9241 -0.5093 45 1 7.1635 3.0822 0.9930 46 1 9.3224 2.9027 -1.0271 47 1 5.6929 0.4076 2.3879 48 1 5.0755 -0.4057 0.9174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714856471.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:47 Heat of formation + Delta-G solvation = 19.838688 kcal Electronic energy + Delta-G solvation = -31558.875313 eV Core-core repulsion = 27425.970371 eV Total energy + Delta-G solvation = -4132.904943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.46785 -41.21986 -39.92334 -37.88691 -37.06384 -35.71590 -34.36546 -33.00404 -32.77241 -30.81367 -30.41321 -29.01236 -26.82400 -26.44838 -25.26819 -24.40743 -23.53060 -22.50069 -21.97530 -21.72446 -20.45839 -19.09962 -18.66700 -18.58035 -17.89451 -17.46648 -17.12125 -16.57223 -16.47869 -16.14212 -15.87666 -15.59384 -15.48113 -15.38611 -14.46919 -14.32433 -14.00946 -13.88254 -13.63795 -13.58257 -13.55812 -13.49829 -13.02651 -12.79849 -12.72432 -12.65967 -12.58810 -12.45138 -12.33384 -11.98778 -11.94087 -11.87656 -11.77058 -11.62140 -11.50931 -11.38088 -10.96508 -10.56444 -10.40055 -9.68524 -9.26921 -8.27755 -7.58713 -4.83104 0.16281 0.88511 1.08950 1.46062 1.47880 1.55814 1.71828 2.19689 2.54265 2.64005 3.41065 3.57720 3.81434 3.86931 3.91717 3.98573 4.02049 4.09318 4.20867 4.24542 4.27612 4.38666 4.40713 4.47206 4.60605 4.66507 4.69110 4.79196 4.82785 4.87585 4.96293 5.02049 5.03240 5.09533 5.14716 5.18314 5.21275 5.35700 5.43134 5.57519 5.58778 5.77964 5.91148 5.96946 6.06524 6.44123 6.45830 6.72705 7.36224 7.62761 8.06449 8.71562 9.52255 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012419 B = 0.004173 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.012674 B = 6708.347890 C = 8267.020628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.120 4.120 3 C 0.106 3.894 4 N -0.594 5.594 5 C 0.542 3.458 6 O -0.458 6.458 7 C -0.050 4.050 8 C -0.006 4.006 9 O -0.222 6.222 10 C 0.373 3.627 11 O -0.251 6.251 12 C 0.040 3.960 13 C -0.145 4.145 14 N -0.454 5.454 15 C 0.145 3.855 16 H 0.132 0.868 17 C -0.146 4.146 18 C 0.203 3.797 19 N -0.577 5.577 20 C -0.180 4.180 21 H 0.059 0.941 22 C -0.069 4.069 23 N -0.952 5.952 24 Si 0.958 3.042 25 H -0.296 1.296 26 H -0.300 1.300 27 H -0.275 1.275 28 C 0.126 3.874 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.236 0.764 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.001 0.999 45 H 0.001 0.999 46 H 0.234 0.766 47 H 0.036 0.964 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.640 -1.321 -6.786 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C -0.016 4.016 4 N -0.328 5.328 5 C 0.326 3.674 6 O -0.327 6.327 7 C -0.169 4.169 8 C -0.078 4.078 9 O -0.113 6.113 10 C 0.128 3.872 11 O -0.159 6.159 12 C -0.034 4.034 13 C -0.202 4.202 14 N -0.201 5.201 15 C 0.041 3.959 16 H 0.150 0.850 17 C -0.185 4.185 18 C 0.078 3.922 19 N -0.302 5.302 20 C -0.311 4.311 21 H 0.077 0.923 22 C -0.260 4.260 23 N -0.605 5.605 24 Si 0.790 3.210 25 H -0.225 1.225 26 H -0.227 1.227 27 H -0.200 1.200 28 C 0.000 4.000 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.252 0.748 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.044 0.956 47 H 0.053 0.947 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -23.493 -1.361 -6.424 24.394 hybrid contribution 1.805 -0.420 -1.589 2.442 sum -21.688 -1.781 -8.014 23.189 Atomic orbital electron populations 1.21549 0.93725 1.01650 1.02213 1.21686 0.97145 0.96768 1.00250 1.22109 0.77190 0.97741 1.04522 1.47678 1.07354 1.72879 1.04884 1.17599 0.87228 0.79737 0.82862 1.91674 1.11476 1.44394 1.85193 1.22090 0.88791 1.09832 0.96167 1.25045 0.92681 1.03732 0.86339 1.84358 1.15374 1.72048 1.39523 1.23854 0.80598 0.97362 0.85405 1.86395 1.13509 1.89014 1.27018 1.23406 1.02198 1.03677 0.74137 1.21839 0.90998 1.04037 1.03329 1.71372 1.12962 1.24565 1.11182 1.22310 0.92939 0.94584 0.86072 0.85028 1.23233 0.96915 0.97151 1.01186 1.20737 0.92066 0.84191 0.95240 1.44237 1.25414 1.02492 1.58010 1.19014 0.97062 0.89498 1.25495 0.92269 1.25212 1.00803 0.96309 1.03715 1.70189 1.33577 1.06506 1.50221 0.85318 0.79070 0.77858 0.78792 1.22464 1.22698 1.20041 1.21934 0.88563 0.95149 0.94379 0.92777 0.91495 0.92728 0.94664 0.92908 0.89250 0.87994 0.74801 0.90241 0.90327 0.91083 0.91036 0.87268 0.91413 0.89500 0.98079 0.98094 0.95606 0.94657 0.95792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.91 71.98 0.71 -1.86 16 2 C -0.12 -2.99 5.80 30.59 0.18 -2.82 16 3 C 0.11 2.81 4.97 86.38 0.43 3.24 16 4 N -0.59 -20.32 2.57 -794.02 -2.04 -22.37 16 5 C 0.54 22.23 7.06 86.65 0.61 22.84 16 6 O -0.46 -23.37 8.88 -4.09 -0.04 -23.40 16 7 C -0.05 -1.78 6.53 40.31 0.26 -1.52 16 8 C -0.01 -0.19 11.94 67.28 0.80 0.61 16 9 O -0.22 -6.05 10.20 18.92 0.19 -5.85 16 10 C 0.37 10.06 8.98 130.43 1.17 11.23 16 11 O -0.25 -5.34 10.19 -64.19 -0.65 -6.00 16 12 C 0.04 0.53 6.38 71.98 0.46 0.99 16 13 C -0.15 -1.13 10.28 71.98 0.74 -0.39 16 14 N -0.45 -13.87 6.82 -419.38 -2.86 -16.73 16 15 C 0.15 4.95 3.77 46.38 0.17 5.13 16 16 H 0.13 3.32 7.90 -2.39 -0.02 3.30 16 17 C -0.15 -5.54 6.52 31.78 0.21 -5.33 16 18 C 0.20 10.65 4.24 86.73 0.37 11.02 16 19 N -0.58 -31.12 1.73 -692.00 -1.20 -32.32 16 20 C -0.18 -10.80 8.72 84.03 0.73 -10.07 16 21 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 22 C -0.07 -4.21 5.46 84.86 0.46 -3.75 16 23 N -0.95 -61.15 10.41 21.65 0.23 -60.92 16 24 Si 0.96 49.53 29.56 68.60 2.03 51.56 16 25 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 26 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 27 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 28 C 0.13 5.41 6.17 86.86 0.54 5.95 16 29 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.03 1.06 7.27 -2.39 -0.02 1.05 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.89 7.92 -2.39 -0.02 1.87 16 35 H 0.10 2.91 5.15 -2.39 -0.01 2.90 16 36 H 0.24 7.30 8.06 -2.91 -0.02 7.27 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 44 H 0.00 0.07 6.28 -2.39 -0.01 0.05 16 45 H 0.00 0.06 7.10 -2.39 -0.02 0.04 16 46 H 0.23 14.81 8.31 -92.71 -0.77 14.04 16 47 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.88 380.10 4.46 -73.42 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 0.95 Total: 7.33 kcal Atomic # 6 Polarization: 27.43 SS G_CDS: 7.85 Total: 35.28 kcal Atomic # 7 Polarization: -126.46 SS G_CDS: -5.88 Total: -132.33 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.50 Total: -35.25 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.03 Total: 51.56 kcal Total: -77.88 4.46 -73.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714856471.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.259 kcal (2) G-P(sol) polarization free energy of solvation -77.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds