Wall clock time and date at job start Tue Mar 31 2020 19:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47008 * 2 1 4 4 N 1.46504 * 109.47322 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00151 * 275.72459 * 4 3 2 6 6 O 1.21617 * 120.00223 * 184.47270 * 5 4 3 7 7 C 1.47371 * 119.99694 * 4.47089 * 5 4 3 8 8 C 1.35918 * 126.41085 * 175.06856 * 7 5 4 9 9 O 1.34487 * 107.08636 * 179.90505 * 8 7 5 10 10 C 1.34203 * 108.24866 * 0.36595 * 9 8 7 11 11 O 1.35352 * 125.44875 * 179.73406 * 10 9 8 12 12 C 1.42901 * 117.00053 * 0.04120 * 11 10 9 13 13 C 1.52994 * 109.47330 * 180.02562 * 12 11 10 14 14 N 1.30551 * 109.10823 * 359.77383 * 10 9 8 15 15 C 1.46504 * 119.99948 * 95.71760 * 4 3 2 16 16 H 1.08994 * 110.64193 * 341.11405 * 15 4 3 17 17 C 1.55162 * 110.86658 * 104.35616 * 15 4 3 18 18 C 1.55128 * 101.48589 * 82.76612 * 17 15 4 19 19 N 1.47423 * 104.72248 * 37.29391 * 18 17 15 20 20 C 1.36937 * 125.65086 * 155.81614 * 19 18 17 21 21 H 1.07999 * 120.00229 * 179.69512 * 20 19 18 22 22 C 1.38810 * 119.99969 * 359.69185 * 20 19 18 23 23 N 1.31622 * 119.99694 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00341 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47117 * 59.99685 * 24 22 20 26 26 H 1.48495 * 109.47360 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46713 * 300.00190 * 24 22 20 28 28 C 1.47019 * 108.70397 * 335.55377 * 19 18 17 29 29 H 1.09007 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47169 * 300.00127 * 1 2 3 31 31 H 1.08996 * 109.47326 * 60.00672 * 1 2 3 32 32 H 1.08993 * 109.47190 * 239.99462 * 2 1 3 33 33 H 1.09003 * 109.46818 * 119.99711 * 2 1 3 34 34 H 1.09000 * 109.47259 * 59.99928 * 3 2 1 35 35 H 1.09003 * 109.47095 * 299.99542 * 3 2 1 36 36 H 1.08000 * 126.45603 * 0.02562 * 8 7 5 37 37 H 1.09004 * 109.47396 * 300.00776 * 12 11 10 38 38 H 1.09000 * 109.46735 * 60.00029 * 12 11 10 39 39 H 1.09000 * 109.47370 * 60.00195 * 13 12 11 40 40 H 1.09002 * 109.47147 * 180.02562 * 13 12 11 41 41 H 1.09008 * 109.47040 * 300.00190 * 13 12 11 42 42 H 1.08999 * 111.00189 * 201.00525 * 17 15 4 43 43 H 1.08998 * 111.00555 * 324.85881 * 17 15 4 44 44 H 1.08991 * 110.49996 * 278.45006 * 18 17 15 45 45 H 1.09003 * 110.34058 * 156.05177 * 18 17 15 46 46 H 0.97008 * 119.99726 * 180.02562 * 23 22 20 47 47 H 1.09004 * 109.88607 * 120.70193 * 28 19 18 48 48 H 1.09001 * 109.88695 * 241.71834 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.3263 1.1623 6 8 5.3918 1.4079 1.1726 7 6 3.4444 1.1004 2.4200 8 6 3.9910 0.8717 3.6433 9 8 2.9730 0.7219 4.5092 10 6 1.8220 0.8478 3.8306 11 8 0.5817 0.7530 4.3642 12 6 0.4970 0.4983 5.7678 13 6 -0.9731 0.4244 6.1849 14 7 2.0899 1.0755 2.5733 15 6 4.2380 1.5688 -1.2615 16 1 3.5947 1.3213 -2.1059 17 6 4.8257 2.9962 -1.4190 18 6 6.1328 2.8851 -0.5910 19 7 6.6308 1.5234 -0.8579 20 6 7.9331 1.1143 -0.7493 21 1 8.1967 0.0891 -0.9632 22 6 8.9145 2.0174 -0.3644 23 7 8.5933 3.2670 -0.1042 24 14 10.6911 1.4596 -0.2170 25 1 11.1627 0.9563 -1.5322 26 1 11.5361 2.6051 0.2060 27 1 10.7869 0.3740 0.7918 28 6 5.4966 0.6758 -1.2537 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8901 36 1 5.0444 0.8218 3.8763 37 1 0.9871 -0.4483 5.9956 38 1 0.9899 1.3030 6.3134 39 1 -1.4656 -0.3806 5.6393 40 1 -1.0377 0.2306 7.2556 41 1 -1.4635 1.3709 5.9571 42 1 5.0392 3.2176 -2.4647 43 1 4.1569 3.7433 -0.9917 44 1 5.9237 3.0112 0.4712 45 1 6.8579 3.6267 -0.9265 46 1 9.2792 3.8982 0.1644 47 1 5.6682 0.2684 -2.2501 48 1 5.3731 -0.1365 -0.5374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714856472.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:53 Heat of formation + Delta-G solvation = 27.106807 kcal Electronic energy + Delta-G solvation = -31186.676406 eV Core-core repulsion = 27054.086633 eV Total energy + Delta-G solvation = -4132.589773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.40247 -39.84103 -39.08509 -36.29706 -35.83959 -34.53347 -32.73970 -32.26508 -31.40312 -29.43242 -28.86311 -27.27790 -25.73874 -24.62743 -24.10335 -23.48895 -22.46736 -21.44375 -20.74147 -19.83734 -19.26333 -17.92464 -17.62251 -16.87203 -16.48732 -16.34283 -15.81003 -15.71837 -15.02686 -14.85062 -14.43870 -14.33359 -13.94576 -13.59869 -13.37761 -13.26557 -13.17103 -13.06980 -12.79812 -12.17734 -12.13667 -12.01710 -11.80269 -11.66749 -11.50682 -11.34248 -11.23919 -10.98053 -10.76928 -10.69693 -10.56114 -10.51205 -10.16289 -9.95788 -9.76533 -9.56834 -9.33612 -9.08276 -8.62476 -8.37029 -7.80096 -6.43709 -5.36085 -2.72574 1.28152 1.82851 2.18552 2.69254 3.41009 3.54421 3.57877 3.59505 3.79898 4.39654 4.40003 4.46145 4.71295 4.72449 4.94357 5.05632 5.21528 5.26917 5.28183 5.33491 5.49776 5.54293 5.58413 5.61129 5.63525 5.69957 5.75388 5.82167 5.91410 6.01746 6.08564 6.12486 6.21636 6.37073 6.48038 6.50732 6.67613 6.72464 6.74746 6.84551 6.93572 7.33489 7.54337 7.83118 7.96688 8.03661 8.16596 8.65880 8.88646 9.51879 10.13612 10.81580 11.67177 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003481 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.567902 B = 8041.506309 C = 9313.679144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C 0.111 3.889 4 N -0.594 5.594 5 C 0.562 3.438 6 O -0.442 6.442 7 C -0.032 4.032 8 C -0.008 4.008 9 O -0.230 6.230 10 C 0.367 3.633 11 O -0.248 6.248 12 C 0.052 3.948 13 C -0.151 4.151 14 N -0.445 5.445 15 C 0.136 3.864 16 H 0.083 0.917 17 C -0.160 4.160 18 C 0.159 3.841 19 N -0.577 5.577 20 C -0.200 4.200 21 H 0.069 0.931 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.293 1.293 27 H -0.289 1.289 28 C 0.140 3.860 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.235 0.765 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.036 0.964 45 H 0.094 0.906 46 H 0.246 0.754 47 H 0.021 0.979 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.280 -4.855 9.524 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.012 4.012 4 N -0.328 5.328 5 C 0.347 3.653 6 O -0.312 6.312 7 C -0.151 4.151 8 C -0.079 4.079 9 O -0.122 6.122 10 C 0.122 3.878 11 O -0.157 6.157 12 C -0.023 4.023 13 C -0.208 4.208 14 N -0.192 5.192 15 C 0.033 3.967 16 H 0.101 0.899 17 C -0.200 4.200 18 C 0.034 3.966 19 N -0.302 5.302 20 C -0.329 4.329 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.571 5.571 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.219 1.219 27 H -0.217 1.217 28 C 0.013 3.987 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.251 0.749 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.112 0.888 46 H 0.057 0.943 47 H 0.038 0.962 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -21.068 -4.636 9.128 23.424 hybrid contribution 1.258 -0.569 0.987 1.697 sum -19.810 -5.205 10.115 22.843 Atomic orbital electron populations 1.21612 0.95746 1.00969 1.01599 1.21785 0.95580 0.97667 1.01542 1.21840 0.79053 0.97002 1.03304 1.47641 1.06334 1.73149 1.05722 1.16868 0.86814 0.80200 0.81458 1.91281 1.10771 1.44418 1.84680 1.22112 0.88067 1.08204 0.96724 1.24989 0.92265 1.03733 0.86905 1.84354 1.15577 1.71218 1.41017 1.23628 0.79990 0.98391 0.85829 1.86342 1.15079 1.87418 1.26827 1.22998 1.00206 1.02109 0.77028 1.21798 0.92979 1.04023 1.02014 1.71476 1.13850 1.23040 1.10830 1.22103 0.93146 0.97674 0.83821 0.89912 1.23574 1.00693 0.94512 1.01232 1.22105 0.90294 0.88409 0.95776 1.44177 1.01628 1.05935 1.78459 1.18931 0.82108 0.94602 1.37264 0.91262 1.24660 0.97565 0.96009 1.02766 1.69827 1.30812 1.02678 1.53824 0.86244 0.85259 0.76969 0.77580 1.21571 1.21886 1.21661 1.21364 0.87377 0.93392 0.96570 0.93452 0.92243 0.93284 0.92930 0.91871 0.87938 0.91662 0.74922 0.90973 0.90936 0.91044 0.89615 0.91029 0.91681 0.92569 0.94686 0.88800 0.94288 0.96164 0.96226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.13 -1.65 5.66 -26.73 -0.15 -1.80 16 3 C 0.11 1.57 4.96 -4.04 -0.02 1.55 16 4 N -0.59 -10.44 2.53 -165.30 -0.42 -10.86 16 5 C 0.56 11.03 6.73 -12.54 -0.08 10.94 16 6 O -0.44 -10.67 10.30 5.26 0.05 -10.62 16 7 C -0.03 -0.53 6.30 -82.98 -0.52 -1.05 16 8 C -0.01 -0.11 11.93 29.90 0.36 0.25 16 9 O -0.23 -2.94 10.20 -17.75 -0.18 -3.12 16 10 C 0.37 4.78 8.98 52.22 0.47 5.25 16 11 O -0.25 -2.66 10.19 -40.98 -0.42 -3.07 16 12 C 0.05 0.36 6.38 37.15 0.24 0.59 16 13 C -0.15 -0.69 10.28 37.15 0.38 -0.31 16 14 N -0.45 -6.56 6.44 -11.71 -0.08 -6.63 16 15 C 0.14 2.55 3.62 -66.09 -0.24 2.31 16 16 H 0.08 1.31 8.02 -51.93 -0.42 0.89 16 17 C -0.16 -3.28 6.75 -24.46 -0.17 -3.44 16 18 C 0.16 4.14 4.96 -2.41 -0.01 4.13 16 19 N -0.58 -15.70 2.24 -169.94 -0.38 -16.08 16 20 C -0.20 -5.92 10.27 -15.06 -0.15 -6.08 16 21 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 22 C -0.02 -0.46 5.49 -17.43 -0.10 -0.56 16 23 N -0.92 -28.42 10.08 55.49 0.56 -27.86 16 24 Si 0.91 23.34 29.55 -169.99 -5.02 18.32 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 C 0.14 3.18 5.98 -3.07 -0.02 3.16 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.93 6.60 -51.93 -0.34 0.59 16 34 H 0.10 1.51 5.54 -51.93 -0.29 1.22 16 35 H 0.06 0.82 8.01 -51.93 -0.42 0.41 16 36 H 0.23 2.98 8.06 -52.49 -0.42 2.55 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.34 8.14 -51.92 -0.42 -0.09 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.04 1.01 5.57 -51.93 -0.29 0.72 16 45 H 0.09 2.77 5.86 -51.93 -0.30 2.46 16 46 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.02 0.48 7.06 -51.93 -0.37 0.11 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -34.73 379.63 -7.28 -42.01 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.46 Total: -1.62 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 0.35 Total: 13.81 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.32 Total: -61.43 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.54 Total: -16.81 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.73 -7.28 -42.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714856472.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.112 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds