Wall clock time and date at job start Tue Mar 31 2020 19:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47008 * 2 1 4 4 N 1.46504 * 109.47322 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00151 * 275.72459 * 4 3 2 6 6 O 1.21617 * 120.00223 * 184.47270 * 5 4 3 7 7 C 1.47371 * 119.99694 * 4.47089 * 5 4 3 8 8 C 1.35918 * 126.41085 * 175.06856 * 7 5 4 9 9 O 1.34487 * 107.08636 * 179.90505 * 8 7 5 10 10 C 1.34203 * 108.24866 * 0.36595 * 9 8 7 11 11 O 1.35352 * 125.44875 * 179.73406 * 10 9 8 12 12 C 1.42901 * 117.00053 * 0.04120 * 11 10 9 13 13 C 1.52994 * 109.47330 * 180.02562 * 12 11 10 14 14 N 1.30551 * 109.10823 * 359.77383 * 10 9 8 15 15 C 1.46504 * 119.99948 * 95.71760 * 4 3 2 16 16 H 1.08994 * 110.64193 * 341.11405 * 15 4 3 17 17 C 1.55162 * 110.86658 * 104.35616 * 15 4 3 18 18 C 1.55128 * 101.48589 * 82.76612 * 17 15 4 19 19 N 1.47423 * 104.72248 * 37.29391 * 18 17 15 20 20 C 1.36937 * 125.65086 * 155.81614 * 19 18 17 21 21 H 1.07999 * 120.00229 * 179.69512 * 20 19 18 22 22 C 1.38810 * 119.99969 * 359.69185 * 20 19 18 23 23 N 1.31622 * 119.99694 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00341 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47117 * 59.99685 * 24 22 20 26 26 H 1.48495 * 109.47360 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46713 * 300.00190 * 24 22 20 28 28 C 1.47019 * 108.70397 * 335.55377 * 19 18 17 29 29 H 1.09007 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47169 * 300.00127 * 1 2 3 31 31 H 1.08996 * 109.47326 * 60.00672 * 1 2 3 32 32 H 1.08993 * 109.47190 * 239.99462 * 2 1 3 33 33 H 1.09003 * 109.46818 * 119.99711 * 2 1 3 34 34 H 1.09000 * 109.47259 * 59.99928 * 3 2 1 35 35 H 1.09003 * 109.47095 * 299.99542 * 3 2 1 36 36 H 1.08000 * 126.45603 * 0.02562 * 8 7 5 37 37 H 1.09004 * 109.47396 * 300.00776 * 12 11 10 38 38 H 1.09000 * 109.46735 * 60.00029 * 12 11 10 39 39 H 1.09000 * 109.47370 * 60.00195 * 13 12 11 40 40 H 1.09002 * 109.47147 * 180.02562 * 13 12 11 41 41 H 1.09008 * 109.47040 * 300.00190 * 13 12 11 42 42 H 1.08999 * 111.00189 * 201.00525 * 17 15 4 43 43 H 1.08998 * 111.00555 * 324.85881 * 17 15 4 44 44 H 1.08991 * 110.49996 * 278.45006 * 18 17 15 45 45 H 1.09003 * 110.34058 * 156.05177 * 18 17 15 46 46 H 0.97008 * 119.99726 * 180.02562 * 23 22 20 47 47 H 1.09004 * 109.88607 * 120.70193 * 28 19 18 48 48 H 1.09001 * 109.88695 * 241.71834 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.3263 1.1623 6 8 5.3918 1.4079 1.1726 7 6 3.4444 1.1004 2.4200 8 6 3.9910 0.8717 3.6433 9 8 2.9730 0.7219 4.5092 10 6 1.8220 0.8478 3.8306 11 8 0.5817 0.7530 4.3642 12 6 0.4970 0.4983 5.7678 13 6 -0.9731 0.4244 6.1849 14 7 2.0899 1.0755 2.5733 15 6 4.2380 1.5688 -1.2615 16 1 3.5947 1.3213 -2.1059 17 6 4.8257 2.9962 -1.4190 18 6 6.1328 2.8851 -0.5910 19 7 6.6308 1.5234 -0.8579 20 6 7.9331 1.1143 -0.7493 21 1 8.1967 0.0891 -0.9632 22 6 8.9145 2.0174 -0.3644 23 7 8.5933 3.2670 -0.1042 24 14 10.6911 1.4596 -0.2170 25 1 11.1627 0.9563 -1.5322 26 1 11.5361 2.6051 0.2060 27 1 10.7869 0.3740 0.7918 28 6 5.4966 0.6758 -1.2537 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8901 36 1 5.0444 0.8218 3.8763 37 1 0.9871 -0.4483 5.9956 38 1 0.9899 1.3030 6.3134 39 1 -1.4656 -0.3806 5.6393 40 1 -1.0377 0.2306 7.2556 41 1 -1.4635 1.3709 5.9571 42 1 5.0392 3.2176 -2.4647 43 1 4.1569 3.7433 -0.9917 44 1 5.9237 3.0112 0.4712 45 1 6.8579 3.6267 -0.9265 46 1 9.2792 3.8982 0.1644 47 1 5.6682 0.2684 -2.2501 48 1 5.3731 -0.1365 -0.5374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714856472.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:52 Heat of formation + Delta-G solvation = 4.227641 kcal Electronic energy + Delta-G solvation = -31187.668521 eV Core-core repulsion = 27054.086633 eV Total energy + Delta-G solvation = -4133.581888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.50761 -41.35156 -39.92814 -38.03617 -37.18644 -35.77653 -34.40828 -33.07587 -32.79163 -30.91394 -30.41858 -29.03792 -26.90908 -26.51334 -25.29160 -24.41536 -23.55101 -22.54433 -22.00376 -21.80505 -20.51181 -19.18863 -18.74732 -18.59930 -17.98312 -17.49389 -17.14353 -16.73266 -16.55508 -16.15316 -15.95367 -15.55656 -15.54794 -15.40521 -14.51007 -14.37923 -14.18296 -13.89238 -13.82680 -13.60906 -13.55545 -13.30440 -13.03321 -12.93877 -12.75731 -12.67337 -12.64505 -12.49948 -12.32076 -12.01818 -11.95022 -11.89519 -11.78697 -11.63290 -11.43208 -11.36342 -11.08891 -10.80636 -10.42863 -9.73403 -9.34890 -8.59222 -7.59867 -4.98620 0.10143 0.87210 1.03069 1.45642 1.50146 1.55929 1.68103 2.08822 2.38239 2.58464 3.31421 3.46211 3.77988 3.87151 3.92759 3.97849 3.99397 4.02332 4.18027 4.21980 4.27436 4.34664 4.36652 4.43861 4.59213 4.63350 4.66926 4.78054 4.83387 4.88319 4.93606 5.00291 5.05306 5.08695 5.13646 5.19368 5.20649 5.33999 5.42698 5.54086 5.56823 5.74796 5.87760 5.94407 6.04392 6.40448 6.48491 6.61444 7.27385 7.41056 7.99175 8.64865 9.41056 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003481 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.567902 B = 8041.506309 C = 9313.679144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.120 4.120 3 C 0.111 3.889 4 N -0.590 5.590 5 C 0.561 3.439 6 O -0.500 6.500 7 C -0.056 4.056 8 C 0.004 3.996 9 O -0.220 6.220 10 C 0.376 3.624 11 O -0.250 6.250 12 C 0.040 3.960 13 C -0.146 4.146 14 N -0.453 5.453 15 C 0.148 3.852 16 H 0.128 0.872 17 C -0.145 4.145 18 C 0.165 3.835 19 N -0.594 5.594 20 C -0.216 4.216 21 H 0.068 0.932 22 C -0.073 4.073 23 N -0.948 5.948 24 Si 0.974 3.026 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.286 1.286 28 C 0.138 3.862 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.243 0.757 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.005 0.995 45 H 0.054 0.946 46 H 0.239 0.761 47 H 0.031 0.969 48 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.804 -5.733 9.577 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 C -0.011 4.011 4 N -0.323 5.323 5 C 0.347 3.653 6 O -0.374 6.374 7 C -0.174 4.174 8 C -0.068 4.068 9 O -0.111 6.111 10 C 0.131 3.869 11 O -0.159 6.159 12 C -0.034 4.034 13 C -0.203 4.203 14 N -0.200 5.200 15 C 0.044 3.956 16 H 0.146 0.854 17 C -0.185 4.185 18 C 0.040 3.960 19 N -0.318 5.318 20 C -0.346 4.346 21 H 0.086 0.914 22 C -0.264 4.264 23 N -0.599 5.599 24 Si 0.803 3.197 25 H -0.203 1.203 26 H -0.221 1.221 27 H -0.212 1.212 28 C 0.011 3.989 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.259 0.741 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.023 0.977 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.049 0.951 48 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -23.679 -5.539 9.168 25.989 hybrid contribution 1.906 -0.358 1.098 2.228 sum -21.774 -5.898 10.265 24.784 Atomic orbital electron populations 1.21541 0.93676 1.01699 1.02187 1.21695 0.97230 0.96431 1.00495 1.22046 0.76620 0.98102 1.04316 1.47774 1.07775 1.71952 1.04817 1.17262 0.86412 0.78875 0.82774 1.91259 1.13156 1.47317 1.85704 1.21732 0.89059 1.10489 0.96116 1.25162 0.92906 1.02197 0.86555 1.84378 1.15334 1.70981 1.40395 1.23772 0.80652 0.96913 0.85612 1.86401 1.13446 1.87025 1.29045 1.23408 1.02134 1.02830 0.75009 1.21842 0.91089 1.03987 1.03367 1.71388 1.12695 1.24063 1.11832 1.22055 0.92448 0.95275 0.85783 0.85419 1.23394 0.97956 0.96252 1.00892 1.21781 0.91993 0.87205 0.94998 1.44385 1.01989 1.07106 1.78319 1.19275 0.83791 0.94639 1.36907 0.91389 1.25479 1.01615 0.96212 1.03142 1.70125 1.31452 1.03555 1.54759 0.85205 0.80266 0.76339 0.77844 1.20318 1.22109 1.21242 1.21493 0.88008 0.93272 0.96085 0.92690 0.92628 0.91673 0.92916 0.93995 0.88368 0.89159 0.74070 0.90140 0.90206 0.91075 0.87273 0.91134 0.90358 0.90929 0.97730 0.92799 0.95111 0.95126 0.97916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.91 71.98 0.71 -1.73 16 2 C -0.12 -2.85 5.66 30.59 0.17 -2.68 16 3 C 0.11 2.87 4.96 86.38 0.43 3.30 16 4 N -0.59 -20.16 2.53 -795.14 -2.02 -22.17 16 5 C 0.56 22.39 6.73 86.65 0.58 22.98 16 6 O -0.50 -25.26 10.30 -4.08 -0.04 -25.31 16 7 C -0.06 -1.85 6.30 40.31 0.25 -1.60 16 8 C 0.00 0.12 11.93 67.28 0.80 0.92 16 9 O -0.22 -5.39 10.20 18.89 0.19 -5.20 16 10 C 0.38 9.36 8.98 130.43 1.17 10.53 16 11 O -0.25 -4.92 10.19 -64.21 -0.65 -5.58 16 12 C 0.04 0.47 6.38 71.98 0.46 0.93 16 13 C -0.15 -0.97 10.28 71.98 0.74 -0.23 16 14 N -0.45 -12.99 6.44 -419.38 -2.70 -15.69 16 15 C 0.15 5.30 3.62 46.18 0.17 5.46 16 16 H 0.13 3.50 8.02 -2.39 -0.02 3.49 16 17 C -0.15 -5.81 6.75 32.06 0.22 -5.60 16 18 C 0.16 8.93 4.96 86.93 0.43 9.36 16 19 N -0.59 -33.21 2.24 -691.57 -1.55 -34.76 16 20 C -0.22 -13.19 10.27 84.03 0.86 -12.33 16 21 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.07 -4.47 5.49 84.86 0.47 -4.00 16 23 N -0.95 -60.91 10.08 21.65 0.22 -60.69 16 24 Si 0.97 49.27 29.55 68.60 2.03 51.30 16 25 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.29 -14.87 7.11 99.48 0.71 -14.17 16 27 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 28 C 0.14 6.26 5.98 86.73 0.52 6.78 16 29 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.18 6.60 -2.39 -0.02 1.17 16 34 H 0.10 2.72 5.54 -2.39 -0.01 2.70 16 35 H 0.09 1.92 8.01 -2.39 -0.02 1.90 16 36 H 0.24 6.36 8.06 -2.91 -0.02 6.34 16 37 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 44 H 0.01 0.31 5.57 -2.39 -0.01 0.29 16 45 H 0.05 3.33 5.86 -2.39 -0.01 3.32 16 46 H 0.24 14.99 8.31 -92.70 -0.77 14.22 16 47 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.00 0.14 7.06 -2.39 -0.02 0.13 16 Total: -1.00 -79.28 379.63 4.42 -74.86 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.96 Total: 11.15 kcal Atomic # 6 Polarization: 24.10 SS G_CDS: 7.99 Total: 32.09 kcal Atomic # 7 Polarization: -127.27 SS G_CDS: -6.05 Total: -133.32 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.50 Total: -36.08 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.03 Total: 51.30 kcal Total: -79.28 4.42 -74.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714856472.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.084 kcal (2) G-P(sol) polarization free energy of solvation -79.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds