Wall clock time and date at job start Tue Mar 31 2020 22:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46887 * 2 1 4 4 O 1.42896 * 109.47232 * 120.00026 * 2 1 3 5 5 C 1.42901 * 114.00056 * 89.99882 * 4 2 1 6 6 C 1.52995 * 109.47590 * 180.02562 * 5 4 2 7 7 H 1.08993 * 109.47870 * 175.00146 * 6 5 4 8 8 C 1.53001 * 109.47069 * 54.99724 * 6 5 4 9 9 O 1.42897 * 109.47139 * 305.51204 * 8 6 5 10 10 N 1.46506 * 109.46658 * 295.00219 * 6 5 4 11 11 C 1.46499 * 120.00369 * 53.69554 * 10 6 5 12 12 C 1.34778 * 119.99630 * 233.68866 * 10 6 5 13 13 O 1.21568 * 120.00212 * 0.02562 * 12 10 6 14 14 N 1.34779 * 119.99618 * 180.02562 * 12 10 6 15 15 C 1.39250 * 119.99755 * 185.03574 * 14 12 10 16 16 C 1.39691 * 119.57298 * 174.15481 * 15 14 12 17 17 C 1.38647 * 119.49065 * 179.97438 * 16 15 14 18 18 C 1.38351 * 118.67553 * 0.02562 * 17 16 15 19 19 C 1.40580 * 119.13021 * 359.97438 * 18 17 16 20 20 C 1.41333 * 119.78725 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99646 * 359.97438 * 20 19 18 22 22 C 1.40021 * 119.99687 * 179.97438 * 20 19 18 23 23 N 1.30741 * 120.00717 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47171 * 60.00236 * 24 22 20 26 26 H 1.48504 * 109.47331 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47268 * 300.00083 * 24 22 20 28 28 N 1.31901 * 119.57439 * 353.88759 * 15 14 12 29 29 H 1.08996 * 109.46826 * 300.00221 * 1 2 3 30 30 H 1.08997 * 109.46581 * 59.99816 * 1 2 3 31 31 H 1.08999 * 109.47017 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46869 * 240.00254 * 2 1 3 33 33 H 1.09005 * 109.46782 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47508 * 300.00168 * 3 2 1 35 35 H 1.09001 * 109.47159 * 60.00431 * 3 2 1 36 36 H 1.09003 * 109.46822 * 59.99684 * 5 4 2 37 37 H 1.09000 * 109.47216 * 300.00537 * 5 4 2 38 38 H 1.09000 * 109.46697 * 65.51127 * 8 6 5 39 39 H 1.09001 * 109.47191 * 185.51189 * 8 6 5 40 40 H 0.96709 * 114.00076 * 180.02562 * 9 8 6 41 41 H 1.08998 * 109.47220 * 265.10256 * 11 10 6 42 42 H 1.08991 * 109.47694 * 145.09552 * 11 10 6 43 43 H 1.09004 * 109.47211 * 25.09626 * 11 10 6 44 44 H 0.97003 * 120.00344 * 5.03284 * 14 12 10 45 45 H 1.08000 * 120.25105 * 359.96164 * 16 15 14 46 46 H 1.08001 * 120.66102 * 180.02562 * 17 16 15 47 47 H 1.07991 * 120.43602 * 179.97438 * 18 17 16 48 48 H 0.96993 * 120.00587 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2002 -2.0782 0.9886 6 6 2.7080 -2.6927 2.2944 7 1 2.7712 -3.7754 2.1861 8 6 1.7412 -2.3494 3.4295 9 8 1.5594 -0.9332 3.4882 10 7 4.0351 -2.1546 2.6037 11 6 4.2428 -0.7055 2.6611 12 6 5.0648 -2.9926 2.8354 13 8 4.8926 -4.1951 2.7874 14 7 6.2855 -2.4975 3.1204 15 6 7.3716 -3.3584 3.2564 16 6 8.6529 -2.8296 3.4298 17 6 9.7330 -3.6883 3.5655 18 6 9.5059 -5.0524 3.5241 19 6 8.1929 -5.5225 3.3470 20 6 7.9450 -6.9133 3.3032 21 1 8.7631 -7.6110 3.4052 22 6 6.6389 -7.3864 3.1275 23 7 5.6486 -6.5417 3.0046 24 14 6.3114 -9.2245 3.0689 25 1 6.7497 -9.8463 4.3442 26 1 4.8582 -9.4625 2.8766 27 1 7.0657 -9.8260 1.9399 28 7 7.1765 -4.6625 3.2251 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.9320 -2.2466 0.1985 37 1 1.2539 -2.5433 0.7124 38 1 0.7809 -2.8318 3.2472 39 1 2.1515 -2.7026 4.3756 40 1 0.9573 -0.6426 4.1870 41 1 4.6087 -0.3524 1.6970 42 1 4.9748 -0.4737 3.4347 43 1 3.2992 -0.2121 2.8944 44 1 6.4076 -1.5416 3.2308 45 1 8.8010 -1.7602 3.4576 46 1 10.7316 -3.3000 3.7008 47 1 10.3265 -5.7470 3.6264 48 1 4.7438 -6.8694 2.8833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881148045.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:18 Heat of formation + Delta-G solvation = -49.532281 kcal Electronic energy + Delta-G solvation = -30825.136517 eV Core-core repulsion = 26689.223424 eV Total energy + Delta-G solvation = -4135.913093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.85326 -38.58480 -37.63138 -36.64655 -34.58899 -34.02194 -33.05037 -32.56212 -30.43312 -30.17364 -28.62557 -27.35314 -26.03617 -25.59191 -25.39628 -22.49662 -21.34208 -21.27800 -20.47881 -18.82977 -18.19554 -17.37464 -16.71009 -16.46101 -16.16894 -15.65547 -15.52576 -14.70145 -14.61767 -14.41465 -14.29440 -13.86877 -13.67522 -13.29601 -13.11966 -12.89949 -12.75095 -12.68131 -12.53649 -12.46519 -12.30145 -11.89685 -11.83791 -11.61030 -11.50799 -11.34030 -11.11079 -10.91904 -10.90621 -10.64280 -10.60092 -10.39459 -9.89260 -9.78369 -9.61056 -9.41190 -8.95724 -8.93657 -7.98166 -7.87388 -7.13886 -6.85969 -6.04903 -4.33058 2.90727 3.18640 3.19190 3.21713 3.23157 3.32877 3.73311 4.11183 4.20210 4.47118 4.58087 4.77610 4.93067 5.01252 5.03223 5.11488 5.25558 5.37676 5.43874 5.45723 5.51794 5.62380 5.66653 5.70027 5.73823 5.87075 5.93747 6.06610 6.09101 6.10565 6.12988 6.16666 6.52031 6.56694 6.65254 6.88181 6.91780 7.10606 7.28338 7.35508 7.48807 7.68855 7.76323 7.83985 7.88143 8.23453 8.35165 8.72467 8.85928 9.12780 9.66679 10.34304 10.55889 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.003423 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.588320 B = 8177.755405 C = 9455.222901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.075 3.925 3 C -0.145 4.145 4 O -0.342 6.342 5 C 0.058 3.942 6 C 0.169 3.831 7 H 0.124 0.876 8 C 0.071 3.929 9 O -0.540 6.540 10 N -0.629 5.629 11 C 0.085 3.915 12 C 0.666 3.334 13 O -0.469 6.469 14 N -0.671 5.671 15 C 0.387 3.613 16 C -0.358 4.358 17 C -0.036 4.036 18 C -0.308 4.308 19 C 0.272 3.728 20 C -0.427 4.427 21 H 0.081 0.919 22 C 0.057 3.943 23 N -0.649 5.649 24 Si 0.894 3.106 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.268 1.268 28 N -0.471 5.471 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.361 0.639 41 H 0.036 0.964 42 H 0.042 0.958 43 H 0.111 0.889 44 H 0.396 0.604 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.611 13.211 -3.337 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.017 3.983 3 C -0.202 4.202 4 O -0.261 6.261 5 C -0.020 4.020 6 C 0.064 3.936 7 H 0.142 0.858 8 C -0.008 4.008 9 O -0.344 6.344 10 N -0.371 5.371 11 C -0.058 4.058 12 C 0.366 3.634 13 O -0.334 6.334 14 N -0.321 5.321 15 C 0.147 3.853 16 C -0.384 4.384 17 C -0.060 4.060 18 C -0.331 4.331 19 C 0.147 3.853 20 C -0.457 4.457 21 H 0.099 0.901 22 C -0.172 4.172 23 N -0.267 5.267 24 Si 0.719 3.281 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.193 1.193 28 N -0.190 5.190 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.206 0.794 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.129 0.871 44 H 0.230 0.770 45 H 0.108 0.892 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.408 12.001 -3.872 18.407 hybrid contribution 0.359 0.020 0.311 0.475 sum -13.049 12.021 -3.561 18.096 Atomic orbital electron populations 1.22246 0.96582 1.01864 1.01974 1.22016 0.93275 0.93913 0.89105 1.21806 1.01683 0.94789 1.01963 1.88226 1.85986 1.18774 1.33131 1.22811 0.98749 0.82993 0.97482 1.21005 0.81280 0.99646 0.91709 0.85809 1.22520 0.97339 0.82506 0.98432 1.86713 1.68881 1.21119 1.57670 1.47111 1.07782 1.06029 1.76193 1.21830 1.03673 0.81200 0.99109 1.16464 0.80530 0.86127 0.80309 1.91351 1.80583 1.09932 1.51507 1.42702 1.06670 1.09216 1.73463 1.18380 0.83568 0.89999 0.93311 1.20448 0.92497 0.97681 1.27786 1.20537 0.96125 0.93475 0.95872 1.21612 0.97996 0.94430 1.19067 1.18393 0.86052 0.93099 0.87803 1.19519 0.93561 0.90663 1.41991 0.90111 1.26177 0.96719 0.98812 0.95476 1.70351 0.99536 1.33632 1.23231 0.86622 0.77831 0.84138 0.79556 1.19263 1.20488 1.19260 1.68707 1.31829 0.97859 1.20576 0.91846 0.92482 0.92913 0.93111 0.92166 0.92010 0.91849 0.93271 0.93184 0.93624 0.93475 0.79386 0.94549 0.93946 0.87123 0.76950 0.89235 0.88681 0.88655 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 9.53 37.16 0.35 -1.06 16 2 C 0.08 0.73 3.34 -26.73 -0.09 0.64 16 3 C -0.15 -1.24 9.56 37.16 0.36 -0.88 16 4 O -0.34 -3.99 5.24 -58.64 -0.31 -4.29 16 5 C 0.06 0.72 5.43 37.16 0.20 0.92 16 6 C 0.17 2.44 3.14 -67.93 -0.21 2.23 16 7 H 0.12 2.05 6.92 -51.93 -0.36 1.69 16 8 C 0.07 0.85 6.84 37.16 0.25 1.11 16 9 O -0.54 -5.77 8.71 -58.64 -0.51 -6.28 16 10 N -0.63 -10.43 2.76 -179.68 -0.50 -10.93 16 11 C 0.09 1.17 8.46 59.85 0.51 1.68 16 12 C 0.67 14.40 8.24 -86.92 -0.72 13.68 16 13 O -0.47 -12.12 11.45 5.31 0.06 -12.06 16 14 N -0.67 -14.32 5.26 -15.78 -0.08 -14.40 16 15 C 0.39 9.86 7.43 -154.99 -1.15 8.71 16 16 C -0.36 -8.37 9.96 -38.89 -0.39 -8.76 16 17 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 18 C -0.31 -7.96 9.83 -38.66 -0.38 -8.34 16 19 C 0.27 7.83 6.55 -84.99 -0.56 7.27 16 20 C -0.43 -11.97 9.14 -37.74 -0.34 -12.32 16 21 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 22 C 0.06 1.54 5.50 -17.35 -0.10 1.44 16 23 N -0.65 -18.21 8.99 55.55 0.50 -17.71 16 24 Si 0.89 19.49 29.56 -169.99 -5.02 14.46 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 28 N -0.47 -13.62 5.74 -10.25 -0.06 -13.68 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.05 0.50 7.79 -51.93 -0.40 0.09 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.05 0.55 7.87 -51.93 -0.41 0.14 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.36 2.50 9.12 45.56 0.42 2.92 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.04 0.55 6.56 -51.93 -0.34 0.21 16 43 H 0.11 1.47 4.26 -51.93 -0.22 1.24 16 44 H 0.40 6.94 6.50 -40.82 -0.27 6.67 16 45 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 46 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 47 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 48 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -33.74 382.54 -9.43 -43.17 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.61 Total: 10.87 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.66 Total: 5.08 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.14 Total: -56.72 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.76 Total: -22.63 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.74 -9.43 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881148045.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.365 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds