Wall clock time and date at job start Tue Mar 31 2020 22:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46887 * 2 1 4 4 O 1.42896 * 109.47232 * 120.00026 * 2 1 3 5 5 C 1.42901 * 114.00056 * 89.99882 * 4 2 1 6 6 C 1.52995 * 109.47590 * 180.02562 * 5 4 2 7 7 H 1.08993 * 109.47870 * 175.00146 * 6 5 4 8 8 C 1.53001 * 109.47069 * 54.99724 * 6 5 4 9 9 O 1.42897 * 109.47139 * 305.51204 * 8 6 5 10 10 N 1.46506 * 109.46658 * 295.00219 * 6 5 4 11 11 C 1.46499 * 120.00369 * 53.69554 * 10 6 5 12 12 C 1.34778 * 119.99630 * 233.68866 * 10 6 5 13 13 O 1.21568 * 120.00212 * 0.02562 * 12 10 6 14 14 N 1.34779 * 119.99618 * 180.02562 * 12 10 6 15 15 C 1.39250 * 119.99755 * 185.03574 * 14 12 10 16 16 C 1.39691 * 119.57298 * 174.15481 * 15 14 12 17 17 C 1.38647 * 119.49065 * 179.97438 * 16 15 14 18 18 C 1.38351 * 118.67553 * 0.02562 * 17 16 15 19 19 C 1.40580 * 119.13021 * 359.97438 * 18 17 16 20 20 C 1.41333 * 119.78725 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99646 * 359.97438 * 20 19 18 22 22 C 1.40021 * 119.99687 * 179.97438 * 20 19 18 23 23 N 1.30741 * 120.00717 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47171 * 60.00236 * 24 22 20 26 26 H 1.48504 * 109.47331 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47268 * 300.00083 * 24 22 20 28 28 N 1.31901 * 119.57439 * 353.88759 * 15 14 12 29 29 H 1.08996 * 109.46826 * 300.00221 * 1 2 3 30 30 H 1.08997 * 109.46581 * 59.99816 * 1 2 3 31 31 H 1.08999 * 109.47017 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46869 * 240.00254 * 2 1 3 33 33 H 1.09005 * 109.46782 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47508 * 300.00168 * 3 2 1 35 35 H 1.09001 * 109.47159 * 60.00431 * 3 2 1 36 36 H 1.09003 * 109.46822 * 59.99684 * 5 4 2 37 37 H 1.09000 * 109.47216 * 300.00537 * 5 4 2 38 38 H 1.09000 * 109.46697 * 65.51127 * 8 6 5 39 39 H 1.09001 * 109.47191 * 185.51189 * 8 6 5 40 40 H 0.96709 * 114.00076 * 180.02562 * 9 8 6 41 41 H 1.08998 * 109.47220 * 265.10256 * 11 10 6 42 42 H 1.08991 * 109.47694 * 145.09552 * 11 10 6 43 43 H 1.09004 * 109.47211 * 25.09626 * 11 10 6 44 44 H 0.97003 * 120.00344 * 5.03284 * 14 12 10 45 45 H 1.08000 * 120.25105 * 359.96164 * 16 15 14 46 46 H 1.08001 * 120.66102 * 180.02562 * 17 16 15 47 47 H 1.07991 * 120.43602 * 179.97438 * 18 17 16 48 48 H 0.96993 * 120.00587 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2002 -2.0782 0.9886 6 6 2.7080 -2.6927 2.2944 7 1 2.7712 -3.7754 2.1861 8 6 1.7412 -2.3494 3.4295 9 8 1.5594 -0.9332 3.4882 10 7 4.0351 -2.1546 2.6037 11 6 4.2428 -0.7055 2.6611 12 6 5.0648 -2.9926 2.8354 13 8 4.8926 -4.1951 2.7874 14 7 6.2855 -2.4975 3.1204 15 6 7.3716 -3.3584 3.2564 16 6 8.6529 -2.8296 3.4298 17 6 9.7330 -3.6883 3.5655 18 6 9.5059 -5.0524 3.5241 19 6 8.1929 -5.5225 3.3470 20 6 7.9450 -6.9133 3.3032 21 1 8.7631 -7.6110 3.4052 22 6 6.6389 -7.3864 3.1275 23 7 5.6486 -6.5417 3.0046 24 14 6.3114 -9.2245 3.0689 25 1 6.7497 -9.8463 4.3442 26 1 4.8582 -9.4625 2.8766 27 1 7.0657 -9.8260 1.9399 28 7 7.1765 -4.6625 3.2251 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.9320 -2.2466 0.1985 37 1 1.2539 -2.5433 0.7124 38 1 0.7809 -2.8318 3.2472 39 1 2.1515 -2.7026 4.3756 40 1 0.9573 -0.6426 4.1870 41 1 4.6087 -0.3524 1.6970 42 1 4.9748 -0.4737 3.4347 43 1 3.2992 -0.2121 2.8944 44 1 6.4076 -1.5416 3.2308 45 1 8.8010 -1.7602 3.4576 46 1 10.7316 -3.3000 3.7008 47 1 10.3265 -5.7470 3.6264 48 1 4.7438 -6.8694 2.8833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881148045.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:17 Heat of formation + Delta-G solvation = -70.908759 kcal Electronic energy + Delta-G solvation = -30826.063471 eV Core-core repulsion = 26689.223424 eV Total energy + Delta-G solvation = -4136.840047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.38614 -39.99452 -39.08628 -37.69986 -35.97163 -35.74395 -34.87656 -33.53015 -32.19342 -31.60997 -30.39385 -28.02459 -27.52850 -27.14800 -26.56270 -24.16987 -23.19756 -22.07429 -21.99668 -20.34989 -19.80094 -18.83780 -17.99788 -17.82325 -17.47832 -16.87646 -16.71958 -16.39550 -16.24387 -15.64322 -15.60768 -15.52295 -15.10988 -14.64813 -14.55631 -14.16198 -14.07957 -13.80680 -13.66027 -13.60651 -13.50098 -13.28889 -12.95469 -12.85179 -12.72211 -12.66294 -12.54709 -12.43372 -12.27675 -12.24124 -11.92809 -11.75929 -11.48383 -11.43549 -10.87937 -10.84692 -10.54986 -10.27075 -9.87446 -9.35812 -9.08370 -8.75113 -7.99549 -6.39160 0.98567 1.29919 1.40551 1.52139 1.55363 1.76535 2.28661 2.53824 2.83324 3.05537 3.11420 3.51531 3.85781 4.04921 4.09307 4.23986 4.28118 4.34657 4.39848 4.43127 4.46414 4.49425 4.54092 4.70514 4.74571 4.79124 4.84432 4.86704 4.94630 4.97919 5.00078 5.05209 5.06732 5.08353 5.30604 5.38293 5.42997 5.45264 5.65015 5.78828 5.88247 5.95112 6.08707 6.28606 6.42561 6.49630 6.84414 7.07671 7.08968 7.17248 7.99957 8.39926 8.61174 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.003423 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.588320 B = 8177.755405 C = 9455.222901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.067 3.933 3 C -0.141 4.141 4 O -0.348 6.348 5 C 0.070 3.930 6 C 0.160 3.840 7 H 0.096 0.904 8 C 0.086 3.914 9 O -0.545 6.545 10 N -0.619 5.619 11 C 0.088 3.912 12 C 0.657 3.343 13 O -0.516 6.516 14 N -0.663 5.663 15 C 0.365 3.635 16 C -0.349 4.349 17 C -0.033 4.033 18 C -0.331 4.331 19 C 0.237 3.763 20 C -0.466 4.466 21 H 0.085 0.915 22 C 0.010 3.990 23 N -0.684 5.684 24 Si 0.974 3.026 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.262 1.262 28 N -0.506 5.506 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.381 0.619 41 H 0.040 0.960 42 H 0.050 0.950 43 H 0.122 0.878 44 H 0.413 0.587 45 H 0.128 0.872 46 H 0.138 0.862 47 H 0.105 0.895 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 14.997 -3.490 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.010 3.990 3 C -0.198 4.198 4 O -0.267 6.267 5 C -0.009 4.009 6 C 0.055 3.945 7 H 0.114 0.886 8 C 0.007 3.993 9 O -0.351 6.351 10 N -0.360 5.360 11 C -0.054 4.054 12 C 0.357 3.643 13 O -0.385 6.385 14 N -0.314 5.314 15 C 0.125 3.875 16 C -0.375 4.375 17 C -0.057 4.057 18 C -0.354 4.354 19 C 0.111 3.889 20 C -0.497 4.497 21 H 0.103 0.897 22 C -0.216 4.216 23 N -0.302 5.302 24 Si 0.795 3.205 25 H -0.185 1.185 26 H -0.198 1.198 27 H -0.186 1.186 28 N -0.225 5.225 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.230 0.770 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.140 0.860 44 H 0.251 0.749 45 H 0.146 0.854 46 H 0.155 0.845 47 H 0.123 0.877 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.155 13.884 -4.019 20.230 hybrid contribution 0.593 -0.290 0.347 0.746 sum -13.562 13.594 -3.672 19.550 Atomic orbital electron populations 1.22184 0.95300 1.01877 1.02677 1.22219 0.94314 0.94276 0.88236 1.21789 1.01115 0.94045 1.02861 1.88193 1.86291 1.17997 1.34207 1.22578 0.98954 0.83847 0.95478 1.21144 0.80891 0.98417 0.94041 0.88612 1.22224 0.97394 0.83500 0.96225 1.86629 1.69764 1.19965 1.58758 1.47096 1.07337 1.06707 1.74821 1.21946 1.04608 0.79175 0.99626 1.16758 0.81272 0.86177 0.80111 1.91337 1.81441 1.12200 1.53477 1.42590 1.05994 1.09649 1.73141 1.18870 0.85542 0.89820 0.93232 1.20901 0.91536 0.99720 1.25313 1.21009 0.98197 0.92471 0.94021 1.21804 0.97300 0.96123 1.20181 1.18902 0.87458 0.93917 0.88620 1.19866 0.94653 0.91110 1.44088 0.89653 1.27041 0.95985 1.03949 0.94612 1.70558 0.99637 1.35822 1.24230 0.85399 0.77819 0.77493 0.79745 1.18538 1.19775 1.18600 1.68669 1.32687 0.99468 1.21668 0.91888 0.91019 0.93247 0.93444 0.93019 0.90274 0.91791 0.95041 0.91359 0.91349 0.95342 0.77038 0.94152 0.93105 0.86014 0.74900 0.85408 0.84463 0.87700 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.53 71.99 0.69 -1.66 16 2 C 0.07 1.18 3.34 30.60 0.10 1.28 16 3 C -0.14 -2.10 9.56 71.98 0.69 -1.41 16 4 O -0.35 -7.54 5.24 -126.60 -0.66 -8.21 16 5 C 0.07 1.70 5.43 71.98 0.39 2.09 16 6 C 0.16 4.67 3.14 44.99 0.14 4.81 16 7 H 0.10 3.37 6.92 -2.39 -0.02 3.36 16 8 C 0.09 1.98 6.84 71.98 0.49 2.47 16 9 O -0.54 -10.45 8.71 -126.60 -1.10 -11.56 16 10 N -0.62 -20.63 2.76 -840.65 -2.32 -22.95 16 11 C 0.09 2.32 8.46 127.77 1.08 3.40 16 12 C 0.66 29.19 8.24 179.05 1.48 30.67 16 13 O -0.52 -28.07 11.45 -3.93 -0.05 -28.11 16 14 N -0.66 -28.33 5.26 -322.12 -1.69 -30.03 16 15 C 0.37 18.74 7.43 133.26 0.99 19.73 16 16 C -0.35 -15.73 9.96 22.72 0.23 -15.50 16 17 C -0.03 -1.48 10.15 22.39 0.23 -1.26 16 18 C -0.33 -17.27 9.83 22.87 0.22 -17.05 16 19 C 0.24 14.11 6.55 40.19 0.26 14.37 16 20 C -0.47 -27.23 9.14 23.46 0.21 -27.02 16 21 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 22 C 0.01 0.55 5.50 85.29 0.47 1.02 16 23 N -0.68 -40.24 8.99 21.84 0.20 -40.04 16 24 Si 0.97 41.39 29.56 68.60 2.03 43.42 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 28 N -0.51 -30.25 5.74 -186.35 -1.07 -31.32 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.74 7.87 -2.39 -0.02 0.73 16 32 H 0.05 0.87 7.79 -2.39 -0.02 0.85 16 33 H 0.05 0.85 8.14 -2.38 -0.02 0.84 16 34 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.03 0.87 8.09 -2.39 -0.02 0.85 16 37 H 0.07 1.42 7.87 -2.39 -0.02 1.40 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.38 4.25 9.12 -74.05 -0.68 3.57 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 1.24 6.56 -2.39 -0.02 1.22 16 43 H 0.12 2.98 4.26 -2.39 -0.01 2.97 16 44 H 0.41 13.99 6.50 -92.71 -0.60 13.38 16 45 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 46 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 47 H 0.10 5.08 8.06 -2.92 -0.02 5.06 16 48 H 0.27 14.92 8.29 -92.71 -0.77 14.15 16 Total: -1.00 -76.80 382.54 2.71 -74.09 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -0.29 Total: 38.77 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 7.67 Total: 15.95 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -4.89 Total: -124.35 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -1.81 Total: -47.88 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -76.80 2.71 -74.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881148045.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.181 kcal (2) G-P(sol) polarization free energy of solvation -76.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds