Wall clock time and date at job start Tue Mar 31 2020 22:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 114.00353 * 2 1 4 4 C 1.52998 * 109.47029 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47183 * 65.00195 * 4 3 2 6 6 C 1.46504 * 119.99624 * 269.99643 * 5 4 3 7 7 C 1.50695 * 109.47099 * 270.00019 * 6 5 4 8 8 H 1.08003 * 120.00232 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99994 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00148 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00446 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47192 * 59.98761 * 11 9 7 13 13 H 1.48490 * 109.47556 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.46735 * 299.99554 * 11 9 7 15 15 C 1.34775 * 120.00328 * 89.99639 * 5 4 3 16 16 O 1.21950 * 119.99681 * 359.97438 * 15 5 4 17 17 N 1.33170 * 119.99935 * 180.02562 * 15 5 4 18 18 C 1.34441 * 120.00057 * 235.58055 * 17 15 5 19 19 C 1.41182 * 120.67494 * 5.70187 * 18 17 15 20 20 C 1.35306 * 119.33651 * 180.27365 * 19 18 17 21 21 N 1.35403 * 120.78637 * 359.74423 * 20 19 18 22 22 H 0.96996 * 119.27589 * 179.97438 * 21 20 19 23 23 C 1.35754 * 121.45664 * 359.97438 * 21 20 19 24 24 C 1.35635 * 120.59739 * 0.02562 * 23 21 20 25 25 O 1.36047 * 120.41267 * 179.97438 * 24 23 21 26 26 C 1.42900 * 116.99977 * 353.80630 * 25 24 23 27 27 C 1.53002 * 109.47090 * 93.75829 * 26 25 24 28 28 C 1.53008 * 109.46930 * 213.75517 * 26 25 24 29 29 H 1.08999 * 109.46944 * 300.00641 * 1 2 3 30 30 H 1.09004 * 109.46370 * 59.99789 * 1 2 3 31 31 H 1.08997 * 109.47358 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46730 * 59.99674 * 3 2 1 33 33 H 1.08997 * 109.46856 * 299.99872 * 3 2 1 34 34 H 1.09003 * 109.47431 * 305.00019 * 4 3 2 35 35 H 1.09000 * 109.46786 * 184.99504 * 4 3 2 36 36 H 1.08998 * 109.47139 * 30.00460 * 6 5 4 37 37 H 1.09002 * 109.46938 * 149.99784 * 6 5 4 38 38 H 0.97002 * 120.00139 * 180.02562 * 10 9 7 39 39 H 1.08005 * 120.32825 * 0.02596 * 19 18 17 40 40 H 1.07996 * 119.60994 * 179.77222 * 20 19 18 41 41 H 1.08000 * 119.69908 * 180.02562 * 23 21 20 42 42 H 1.08993 * 109.46972 * 333.75299 * 26 25 24 43 43 H 1.08999 * 109.46665 * 179.97438 * 27 26 25 44 44 H 1.08993 * 109.47223 * 299.99478 * 27 26 25 45 45 H 1.08998 * 109.47339 * 60.00217 * 27 26 25 46 46 H 1.08999 * 109.46674 * 59.99978 * 28 26 25 47 47 H 1.08998 * 109.46995 * 179.97438 * 28 26 25 48 48 H 1.08995 * 109.46860 * 300.00424 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8927 -1.3402 7 6 5.5017 -1.2983 -0.9411 8 1 6.2203 -0.5463 -0.6504 9 6 5.8613 -2.6293 -0.9481 10 7 4.9863 -3.5451 -1.3025 11 14 7.5907 -3.1323 -0.4527 12 1 7.8522 -2.6972 0.9429 13 1 7.7221 -4.6086 -0.5433 14 1 8.5728 -2.4907 -1.3634 15 6 4.2634 1.3327 -2.3200 16 8 4.1551 2.5451 -2.2457 17 7 4.6640 0.7684 -3.4578 18 6 5.8269 1.1411 -4.0200 19 6 6.6914 2.0400 -3.3583 20 6 7.8526 2.4012 -3.9516 21 7 8.1938 1.9071 -5.1652 22 1 9.0313 2.1812 -5.5705 23 6 7.3895 1.0367 -5.8273 24 6 6.2123 0.6358 -5.2859 25 8 5.4090 -0.2363 -5.9530 26 6 5.7972 -0.5893 -7.2821 27 6 6.6276 -1.8739 -7.2467 28 6 4.5475 -0.8132 -8.1360 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6888 1.8463 -0.8900 34 1 3.8509 0.5684 0.8427 35 1 3.9786 2.1764 0.0901 36 1 3.3857 -1.3633 -0.6713 37 1 3.9138 -1.2124 -2.3644 38 1 5.2392 -4.4815 -1.3071 39 1 6.4266 2.4385 -2.3900 40 1 8.5155 3.0914 -3.4510 41 1 7.6898 0.6600 -6.7939 42 1 6.3920 0.2161 -7.7129 43 1 6.9233 -2.1434 -8.2606 44 1 7.5178 -1.7144 -6.6384 45 1 6.0327 -2.6793 -6.8160 46 1 3.9560 0.1019 -8.1612 47 1 4.8437 -1.0821 -9.1500 48 1 3.9527 -1.6186 -7.7052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934656964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:44 Heat of formation + Delta-G solvation = -70.900094 kcal Electronic energy + Delta-G solvation = -30690.506358 eV Core-core repulsion = 26553.666687 eV Total energy + Delta-G solvation = -4136.839671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.97915 -40.66987 -39.47848 -38.80052 -36.62240 -35.80550 -34.49908 -33.91706 -32.06488 -31.43410 -30.57001 -28.75736 -28.11004 -27.18778 -25.64646 -24.69883 -24.40692 -23.33373 -22.08729 -20.57982 -20.03393 -18.70095 -18.32047 -18.00177 -17.67250 -17.45160 -17.14978 -16.72092 -16.45637 -16.38651 -16.04024 -15.85309 -15.60514 -15.14997 -14.91309 -14.59684 -14.34704 -14.01676 -13.85952 -13.62610 -13.57094 -13.34012 -13.29579 -13.10632 -12.93998 -12.86105 -12.76004 -12.58293 -12.53855 -12.27084 -12.11951 -11.94267 -11.72496 -11.66227 -11.49210 -11.37932 -10.66250 -10.56757 -9.99679 -9.92724 -9.29606 -8.14088 -8.06330 -6.26188 0.05717 0.44766 1.34759 1.40594 1.48400 1.98093 2.06264 2.35885 2.45124 2.48033 2.91310 2.94505 3.16551 3.58580 3.78696 3.86496 4.01007 4.08379 4.11596 4.14424 4.19901 4.30819 4.32587 4.42844 4.48585 4.51030 4.65236 4.71833 4.74668 4.77202 4.85943 4.87059 4.91196 4.94772 5.07023 5.13271 5.29881 5.35154 5.37032 5.53252 5.77281 5.84385 6.04699 6.19866 6.27233 6.33322 6.52746 6.72471 6.89027 7.15398 7.40792 7.98042 8.96051 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008108 B = 0.004693 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.565533 B = 5964.732767 C = 6909.223719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.057 3.943 4 C 0.126 3.874 5 N -0.597 5.597 6 C 0.282 3.718 7 C -0.533 4.533 8 H 0.045 0.955 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.967 3.033 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.269 1.269 15 C 0.672 3.328 16 O -0.656 6.656 17 N -0.657 5.657 18 C 0.290 3.710 19 C -0.294 4.294 20 C 0.182 3.818 21 N -0.541 5.541 22 H 0.451 0.549 23 C 0.035 3.965 24 C 0.031 3.969 25 O -0.316 6.316 26 C 0.060 3.940 27 C -0.173 4.173 28 C -0.149 4.149 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.029 0.971 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.012 0.988 37 H 0.001 0.999 38 H 0.264 0.736 39 H 0.119 0.881 40 H 0.224 0.776 41 H 0.218 0.782 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.055 0.945 47 H 0.109 0.891 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.545 10.819 -13.478 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.020 4.020 4 C 0.002 3.998 5 N -0.328 5.328 6 C 0.160 3.840 7 C -0.571 4.571 8 H 0.063 0.937 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.791 3.209 12 H -0.191 1.191 13 H -0.203 1.203 14 H -0.194 1.194 15 C 0.375 3.625 16 O -0.543 6.543 17 N -0.396 5.396 18 C 0.132 3.868 19 C -0.323 4.323 20 C 0.046 3.954 21 N -0.149 5.149 22 H 0.293 0.707 23 C -0.095 4.095 24 C -0.021 4.021 25 O -0.230 6.230 26 C 0.004 3.996 27 C -0.230 4.230 28 C -0.207 4.207 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.030 0.970 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.241 0.759 41 H 0.234 0.766 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.128 0.872 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.548 10.372 -13.436 19.475 hybrid contribution 0.266 -0.053 0.766 0.812 sum 9.814 10.318 -12.671 19.061 Atomic orbital electron populations 1.22878 0.79977 1.03344 1.00581 1.88021 1.21318 1.28433 1.95443 1.22950 0.94039 0.84598 1.00417 1.21423 0.92732 0.99072 0.86599 1.47666 1.66411 1.08594 1.10113 1.18622 0.95409 0.74602 0.95326 1.21564 0.97676 0.92424 1.45471 0.93665 1.25852 1.01897 0.96087 0.95107 1.70113 1.36575 1.01214 1.48775 0.85490 0.79201 0.77158 0.79062 1.19137 1.20283 1.19354 1.17350 0.78830 0.84085 0.82267 1.90741 1.63434 1.14915 1.85176 1.68428 1.20457 1.36290 1.14416 1.18927 0.89932 0.87683 0.90231 1.21292 0.98955 1.07734 1.04365 1.22261 0.94555 0.93757 0.84793 1.40809 1.21743 1.36707 1.15606 0.70653 1.21995 0.90556 0.96574 1.00400 1.18171 0.93431 0.97779 0.92689 1.86451 1.48780 1.58649 1.29097 1.22865 0.98110 0.98144 0.80434 1.22316 0.99725 0.96902 1.04068 1.21918 0.96657 1.02112 0.99966 0.91739 0.94546 0.89246 0.89366 0.95293 0.90184 0.88991 0.96998 0.98110 0.92691 0.86289 0.75936 0.76610 0.87579 0.87611 0.92021 0.94307 0.92601 0.87210 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.18 16 2 O -0.41 -18.43 9.53 -148.98 -1.42 -19.85 16 3 C 0.06 2.37 6.28 71.98 0.45 2.82 16 4 C 0.13 5.88 5.81 86.38 0.50 6.38 16 5 N -0.60 -33.52 2.42 -845.34 -2.05 -35.56 16 6 C 0.28 17.77 4.95 85.63 0.42 18.19 16 7 C -0.53 -33.44 9.39 25.60 0.24 -33.20 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.01 0.55 5.46 84.65 0.46 1.01 16 10 N -0.93 -59.65 13.29 21.45 0.28 -59.36 16 11 Si 0.97 46.38 29.54 68.60 2.03 48.41 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 15 C 0.67 38.37 6.75 179.55 1.21 39.58 16 16 O -0.66 -37.38 15.21 -5.15 -0.08 -37.46 16 17 N -0.66 -36.90 8.97 -318.94 -2.86 -39.76 16 18 C 0.29 12.93 6.56 40.31 0.26 13.20 16 19 C -0.29 -10.58 8.92 22.32 0.20 -10.38 16 20 C 0.18 3.32 11.16 83.47 0.93 4.25 16 21 N -0.54 -6.20 5.25 -194.79 -1.02 -7.22 16 22 H 0.45 -0.19 8.90 -92.71 -0.82 -1.02 16 23 C 0.03 0.63 10.00 83.48 0.84 1.47 16 24 C 0.03 1.07 6.70 22.51 0.15 1.22 16 25 O -0.32 -11.73 9.59 -94.09 -0.90 -12.63 16 26 C 0.06 1.33 2.82 30.60 0.09 1.42 16 27 C -0.17 -3.52 9.45 71.98 0.68 -2.84 16 28 C -0.15 -3.15 9.56 71.98 0.69 -2.47 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 3.70 8.07 -2.39 -0.02 3.68 16 35 H 0.09 4.03 7.42 -2.39 -0.02 4.01 16 36 H 0.01 0.80 7.11 -2.39 -0.02 0.78 16 37 H 0.00 0.06 7.31 -2.39 -0.02 0.04 16 38 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.12 5.04 6.43 -2.91 -0.02 5.02 16 40 H 0.22 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.22 1.72 5.75 -2.91 -0.02 1.71 16 42 H 0.11 1.41 5.81 -2.39 -0.01 1.39 16 43 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.06 1.22 7.97 -2.39 -0.02 1.20 16 45 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -106.40 400.30 2.51 -103.89 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.14 Total: 16.71 kcal Atomic # 6 Polarization: 34.45 SS G_CDS: 8.38 Total: 42.83 kcal Atomic # 7 Polarization: -136.26 SS G_CDS: -5.64 Total: -141.91 kcal Atomic # 8 Polarization: -67.53 SS G_CDS: -2.40 Total: -69.93 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -106.40 2.51 -103.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934656964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.991 kcal (2) G-P(sol) polarization free energy of solvation -106.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds