Wall clock time and date at job start Tue Mar 31 2020 22:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47088 * 4.72977 * 3 2 1 5 5 C 1.42901 * 113.99898 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.47291 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47081 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99916 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99976 * 179.97438 * 7 6 5 10 10 C 1.47610 * 118.74415 * 359.97438 * 9 7 6 11 11 C 1.53833 * 111.28702 * 138.30698 * 10 9 7 12 12 C 1.51271 * 109.63825 * 319.97674 * 11 10 9 13 13 N 1.46203 * 109.09413 * 92.40537 * 12 11 10 14 14 C 1.46897 * 111.00156 * 144.75742 * 13 12 11 15 15 C 1.50699 * 109.46919 * 64.74987 * 14 13 12 16 16 O 1.21294 * 120.00052 * 354.38236 * 15 14 13 17 17 N 1.34771 * 120.00115 * 174.37327 * 15 14 13 18 18 C 1.37097 * 120.00212 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00143 * 0.02562 * 18 17 15 20 20 C 1.38958 * 119.99991 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00023 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99964 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47231 * 60.00324 * 22 20 18 24 24 H 1.48496 * 109.47298 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47361 * 300.00620 * 22 20 18 26 26 C 1.41441 * 116.34538 * 272.96464 * 13 12 11 27 27 C 1.44883 * 118.74747 * 180.02562 * 9 7 6 28 28 H 4.38436 * 5.44417 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.46997 * 244.72336 * 3 2 1 30 30 H 1.09000 * 109.46942 * 124.73193 * 3 2 1 31 31 H 1.08998 * 109.47435 * 59.99625 * 5 4 3 32 32 H 1.09008 * 109.46853 * 299.99691 * 5 4 3 33 33 H 1.09003 * 109.46891 * 59.99791 * 6 5 4 34 34 H 1.08998 * 109.46831 * 299.99789 * 6 5 4 35 35 H 1.08999 * 109.11244 * 258.78211 * 10 9 7 36 36 H 1.09009 * 109.11688 * 17.90550 * 10 9 7 37 37 H 1.09004 * 109.44355 * 199.92091 * 11 10 9 38 38 H 1.08994 * 109.43073 * 80.02719 * 11 10 9 39 39 H 1.08994 * 109.53438 * 332.51879 * 12 11 10 40 40 H 1.09000 * 109.53335 * 212.28978 * 12 11 10 41 41 H 1.08990 * 109.47087 * 184.74985 * 14 13 12 42 42 H 1.09006 * 109.47138 * 304.75771 * 14 13 12 43 43 H 0.97004 * 120.00289 * 0.02562 * 17 15 14 44 44 H 0.96991 * 119.99772 * 179.97438 * 21 20 18 45 45 H 1.08994 * 109.38913 * 183.64130 * 26 13 12 46 46 H 1.09003 * 109.38722 * 303.32719 * 26 13 12 47 47 H 1.08997 * 109.43352 * 149.65630 * 27 9 7 48 48 H 1.08993 * 109.43477 * 29.78725 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.3417 -0.1111 5 6 4.5475 -1.4535 -0.1210 6 6 4.9428 -2.9266 -0.2435 7 6 6.4452 -3.0443 -0.2545 8 8 7.1321 -2.0481 -0.1730 9 7 7.0254 -4.2566 -0.3550 10 6 6.1628 -5.4506 -0.4521 11 6 6.7038 -6.4473 -1.4915 12 6 7.2209 -5.6942 -2.6971 13 7 8.6489 -5.4339 -2.5222 14 6 9.3583 -5.5052 -3.8065 15 6 8.8728 -4.4014 -4.7104 16 8 7.9500 -3.6950 -4.3633 17 7 9.4642 -4.1991 -5.9044 18 6 9.0229 -3.1946 -6.7265 19 1 8.2017 -2.5651 -6.4172 20 6 9.6324 -2.9863 -7.9579 21 7 10.6314 -3.7525 -8.3345 22 14 9.0316 -1.6172 -9.0776 23 1 9.1715 -0.3122 -8.3829 24 1 9.8409 -1.6050 -10.3226 25 1 7.6044 -1.8463 -9.4178 26 6 8.9905 -4.2551 -1.8191 27 6 8.4719 -4.3384 -0.3625 28 1 -1.0497 -0.0004 0.0002 29 1 3.0091 0.4396 0.9293 30 1 3.0091 0.5863 -0.8446 31 1 4.9505 -1.0446 0.8056 32 1 4.9497 -0.8981 -0.9684 33 1 4.5398 -3.3350 -1.1703 34 1 4.5406 -3.4822 0.6036 35 1 6.1182 -5.9387 0.5214 36 1 5.1585 -5.1427 -0.7432 37 1 5.9036 -7.1203 -1.7997 38 1 7.5148 -7.0268 -1.0503 39 1 6.6871 -4.7487 -2.7927 40 1 7.0669 -6.2932 -3.5947 41 1 10.4289 -5.3916 -3.6370 42 1 9.1649 -6.4701 -4.2753 43 1 10.2021 -4.7641 -6.1822 44 1 11.0565 -3.6074 -9.1941 45 1 10.0743 -4.1399 -1.8110 46 1 8.5406 -3.3949 -2.3149 47 1 8.7839 -5.2843 0.0802 48 1 8.8847 -3.5134 0.2179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195823798.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:25 Heat of formation + Delta-G solvation = -44.072342 kcal Electronic energy + Delta-G solvation = -29696.736380 eV Core-core repulsion = 25561.060048 eV Total energy + Delta-G solvation = -4135.676333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.46461 -39.00509 -38.21217 -37.09489 -35.00901 -33.79854 -33.71513 -32.59787 -31.68919 -31.28144 -29.13522 -27.25795 -26.56023 -25.69908 -24.34524 -23.47862 -21.79810 -20.58809 -19.22344 -19.00372 -18.45130 -17.91503 -17.55442 -16.66654 -16.46074 -16.22193 -15.77546 -15.58485 -15.28045 -15.09005 -14.87625 -14.51941 -14.12752 -13.83844 -13.82801 -13.53977 -13.26477 -13.09346 -12.85358 -12.61060 -12.12544 -11.84104 -11.78996 -11.73693 -11.50705 -11.43503 -11.22782 -11.06633 -11.00661 -10.79316 -10.73113 -10.67337 -10.53648 -10.45170 -10.24459 -9.78153 -9.72667 -9.50559 -9.03191 -8.57087 -7.99595 -7.46078 -6.44450 -3.85589 2.19466 2.52557 2.66472 3.00363 3.17365 3.23597 3.28258 3.66522 3.85611 4.15064 4.22133 4.29019 4.56515 4.80234 4.87082 4.92937 4.99692 5.01175 5.02539 5.13623 5.21425 5.23294 5.30935 5.39900 5.51706 5.58940 5.63312 5.65602 5.68104 5.70461 5.77353 5.88415 5.97662 6.01375 6.11132 6.14117 6.26209 6.51862 6.54960 6.80449 6.87129 7.27829 7.34648 7.39724 7.51825 7.76277 8.02056 8.21789 8.57193 9.14311 9.50702 10.01573 10.72230 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008768 B = 0.003005 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.737383 B = 9316.980979 C =11668.879089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.190 4.190 3 C 0.173 3.827 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.138 4.138 7 C 0.517 3.483 8 O -0.540 6.540 9 N -0.602 5.602 10 C 0.107 3.893 11 C -0.132 4.132 12 C 0.074 3.926 13 N -0.536 5.536 14 C 0.049 3.951 15 C 0.405 3.595 16 O -0.593 6.593 17 N -0.558 5.558 18 C -0.301 4.301 19 H 0.101 0.899 20 C 0.024 3.976 21 N -0.900 5.900 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.047 3.953 27 C 0.122 3.878 28 H 0.221 0.779 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.273 0.727 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 -3.242 17.663 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.190 4.190 3 C 0.097 3.903 4 O -0.306 6.306 5 C 0.001 3.999 6 C -0.178 4.178 7 C 0.305 3.695 8 O -0.417 6.417 9 N -0.335 5.335 10 C -0.016 4.016 11 C -0.171 4.171 12 C -0.054 4.054 13 N -0.259 5.259 14 C -0.082 4.082 15 C 0.190 3.810 16 O -0.479 6.479 17 N -0.194 5.194 18 C -0.431 4.431 19 H 0.118 0.882 20 C -0.178 4.178 21 N -0.541 5.541 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.083 4.083 27 C -0.001 4.001 28 H 0.238 0.762 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.774 -2.755 18.035 21.188 hybrid contribution -0.050 1.032 -1.477 1.802 sum -10.823 -1.723 16.559 19.857 Atomic orbital electron populations 1.24953 0.95873 0.97747 1.01050 1.22597 0.93929 1.01972 1.00463 1.19058 0.84557 0.84944 1.01721 1.87851 1.21869 1.25656 1.95246 1.22186 0.79541 0.96046 1.02103 1.21502 0.93112 0.97795 1.05418 1.20342 0.89966 0.83226 0.76004 1.90708 1.65312 1.35992 1.49711 1.47755 1.07024 1.06254 1.72432 1.22071 0.93853 0.86225 0.99414 1.21934 1.01242 0.97606 0.96320 1.21419 0.87739 1.00054 0.96157 1.58884 1.10421 1.38191 1.18358 1.22062 0.98996 0.98308 0.88853 1.21102 0.86847 0.88881 0.84138 1.90497 1.31852 1.50771 1.74828 1.42011 1.31621 1.30597 1.15189 1.19645 1.16400 1.09740 0.97288 0.88158 1.25270 0.96056 0.98656 0.97843 1.69600 1.22873 1.39056 1.22547 0.85935 0.78654 0.80869 0.78883 1.19893 1.20900 1.19917 1.21761 1.00135 0.92951 0.93469 1.21571 0.78973 1.02473 0.97111 0.76179 0.90693 0.90486 0.92121 0.91737 0.87803 0.88253 0.91759 0.90139 0.90550 0.90354 0.92063 0.91710 0.89618 0.89400 0.77433 0.91761 0.90867 0.92000 0.90327 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 19.25 29.55 0.57 -1.04 16 2 C -0.19 -2.04 13.73 -37.12 -0.51 -2.55 16 3 C 0.17 1.74 6.41 34.37 0.22 1.96 16 4 O -0.39 -4.69 10.30 -35.23 -0.36 -5.06 16 5 C 0.08 0.93 5.23 37.16 0.19 1.12 16 6 C -0.14 -1.58 4.41 -27.88 -0.12 -1.70 16 7 C 0.52 7.48 7.63 -10.98 -0.08 7.39 16 8 O -0.54 -9.75 15.41 5.56 0.09 -9.66 16 9 N -0.60 -7.80 2.18 -172.38 -0.38 -8.17 16 10 C 0.11 1.05 5.99 -3.00 -0.02 1.03 16 11 C -0.13 -1.41 5.78 -27.17 -0.16 -1.56 16 12 C 0.07 1.13 4.13 -5.07 -0.02 1.10 16 13 N -0.54 -8.45 3.99 -240.90 -0.96 -9.41 16 14 C 0.05 0.85 5.58 -4.98 -0.03 0.82 16 15 C 0.41 9.32 7.22 -10.99 -0.08 9.24 16 16 O -0.59 -15.49 12.19 5.55 0.07 -15.42 16 17 N -0.56 -14.06 5.29 -10.96 -0.06 -14.11 16 18 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.64 5.50 -17.46 -0.10 0.54 16 21 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 22 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.05 0.77 4.93 -5.70 -0.03 0.75 16 27 C 0.12 1.65 5.52 -3.93 -0.02 1.62 16 28 H 0.22 1.11 7.80 -54.10 -0.42 0.68 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.06 0.85 8.10 -51.92 -0.42 0.43 16 33 H 0.10 1.18 7.41 -51.93 -0.38 0.80 16 34 H 0.10 0.90 8.04 -51.93 -0.42 0.48 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.71 5.87 -51.92 -0.30 0.40 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.82 7.98 -51.93 -0.41 0.40 16 39 H 0.06 1.14 6.22 -51.93 -0.32 0.82 16 40 H 0.06 1.03 7.58 -51.93 -0.39 0.63 16 41 H 0.09 1.36 7.92 -51.93 -0.41 0.94 16 42 H 0.09 1.37 7.94 -51.93 -0.41 0.96 16 43 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.07 1.15 7.85 -51.93 -0.41 0.74 16 46 H 0.06 1.33 6.22 -51.93 -0.32 1.01 16 47 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 48 H 0.08 1.18 7.28 -51.93 -0.38 0.81 16 LS Contribution 392.61 15.07 5.92 5.92 Total: -1.00 -34.09 392.61 -7.69 -41.78 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -7.38 Total: 11.49 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -0.33 Total: 10.18 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.67 Total: -55.46 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.21 Total: -30.14 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.09 -7.69 -41.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195823798.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.289 kcal (2) G-P(sol) polarization free energy of solvation -34.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds