Wall clock time and date at job start Tue Mar 31 2020 22:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47088 * 4.72977 * 3 2 1 5 5 C 1.42901 * 113.99898 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.47291 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47081 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99916 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99976 * 179.97438 * 7 6 5 10 10 C 1.47610 * 118.74415 * 359.97438 * 9 7 6 11 11 C 1.53833 * 111.28702 * 138.30698 * 10 9 7 12 12 C 1.51271 * 109.63825 * 319.97674 * 11 10 9 13 13 N 1.46203 * 109.09413 * 92.40537 * 12 11 10 14 14 C 1.46897 * 111.00156 * 144.75742 * 13 12 11 15 15 C 1.50699 * 109.46919 * 64.74987 * 14 13 12 16 16 O 1.21294 * 120.00052 * 354.38236 * 15 14 13 17 17 N 1.34771 * 120.00115 * 174.37327 * 15 14 13 18 18 C 1.37097 * 120.00212 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00143 * 0.02562 * 18 17 15 20 20 C 1.38958 * 119.99991 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00023 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99964 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47231 * 60.00324 * 22 20 18 24 24 H 1.48496 * 109.47298 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47361 * 300.00620 * 22 20 18 26 26 C 1.41441 * 116.34538 * 272.96464 * 13 12 11 27 27 C 1.44883 * 118.74747 * 180.02562 * 9 7 6 28 28 H 4.38436 * 5.44417 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.46997 * 244.72336 * 3 2 1 30 30 H 1.09000 * 109.46942 * 124.73193 * 3 2 1 31 31 H 1.08998 * 109.47435 * 59.99625 * 5 4 3 32 32 H 1.09008 * 109.46853 * 299.99691 * 5 4 3 33 33 H 1.09003 * 109.46891 * 59.99791 * 6 5 4 34 34 H 1.08998 * 109.46831 * 299.99789 * 6 5 4 35 35 H 1.08999 * 109.11244 * 258.78211 * 10 9 7 36 36 H 1.09009 * 109.11688 * 17.90550 * 10 9 7 37 37 H 1.09004 * 109.44355 * 199.92091 * 11 10 9 38 38 H 1.08994 * 109.43073 * 80.02719 * 11 10 9 39 39 H 1.08994 * 109.53438 * 332.51879 * 12 11 10 40 40 H 1.09000 * 109.53335 * 212.28978 * 12 11 10 41 41 H 1.08990 * 109.47087 * 184.74985 * 14 13 12 42 42 H 1.09006 * 109.47138 * 304.75771 * 14 13 12 43 43 H 0.97004 * 120.00289 * 0.02562 * 17 15 14 44 44 H 0.96991 * 119.99772 * 179.97438 * 21 20 18 45 45 H 1.08994 * 109.38913 * 183.64130 * 26 13 12 46 46 H 1.09003 * 109.38722 * 303.32719 * 26 13 12 47 47 H 1.08997 * 109.43352 * 149.65630 * 27 9 7 48 48 H 1.08993 * 109.43477 * 29.78725 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.3417 -0.1111 5 6 4.5475 -1.4535 -0.1210 6 6 4.9428 -2.9266 -0.2435 7 6 6.4452 -3.0443 -0.2545 8 8 7.1321 -2.0481 -0.1730 9 7 7.0254 -4.2566 -0.3550 10 6 6.1628 -5.4506 -0.4521 11 6 6.7038 -6.4473 -1.4915 12 6 7.2209 -5.6942 -2.6971 13 7 8.6489 -5.4339 -2.5222 14 6 9.3583 -5.5052 -3.8065 15 6 8.8728 -4.4014 -4.7104 16 8 7.9500 -3.6950 -4.3633 17 7 9.4642 -4.1991 -5.9044 18 6 9.0229 -3.1946 -6.7265 19 1 8.2017 -2.5651 -6.4172 20 6 9.6324 -2.9863 -7.9579 21 7 10.6314 -3.7525 -8.3345 22 14 9.0316 -1.6172 -9.0776 23 1 9.1715 -0.3122 -8.3829 24 1 9.8409 -1.6050 -10.3226 25 1 7.6044 -1.8463 -9.4178 26 6 8.9905 -4.2551 -1.8191 27 6 8.4719 -4.3384 -0.3625 28 1 -1.0497 -0.0004 0.0002 29 1 3.0091 0.4396 0.9293 30 1 3.0091 0.5863 -0.8446 31 1 4.9505 -1.0446 0.8056 32 1 4.9497 -0.8981 -0.9684 33 1 4.5398 -3.3350 -1.1703 34 1 4.5406 -3.4822 0.6036 35 1 6.1182 -5.9387 0.5214 36 1 5.1585 -5.1427 -0.7432 37 1 5.9036 -7.1203 -1.7997 38 1 7.5148 -7.0268 -1.0503 39 1 6.6871 -4.7487 -2.7927 40 1 7.0669 -6.2932 -3.5947 41 1 10.4289 -5.3916 -3.6370 42 1 9.1649 -6.4701 -4.2753 43 1 10.2021 -4.7641 -6.1822 44 1 11.0565 -3.6074 -9.1941 45 1 10.0743 -4.1399 -1.8110 46 1 8.5406 -3.3949 -2.3149 47 1 8.7839 -5.2843 0.0802 48 1 8.8847 -3.5134 0.2179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195823798.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:24 Heat of formation + Delta-G solvation = -68.887416 kcal Electronic energy + Delta-G solvation = -29697.812443 eV Core-core repulsion = 25561.060048 eV Total energy + Delta-G solvation = -4136.752395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.63964 -40.54080 -39.20799 -38.51565 -36.39474 -35.65912 -34.52352 -33.62808 -33.34442 -32.64605 -30.43967 -28.25643 -27.75161 -27.03188 -25.92190 -24.63533 -22.87092 -21.91134 -20.94654 -19.98721 -19.86675 -19.27204 -18.57524 -18.00468 -17.60700 -17.29859 -17.05519 -16.74182 -16.57439 -16.48101 -16.13887 -15.88028 -15.56299 -15.48578 -15.11122 -14.87552 -14.44076 -14.21513 -13.97492 -13.69252 -13.56396 -13.31914 -13.11897 -12.99933 -12.80265 -12.66803 -12.59694 -12.49763 -12.29591 -12.20209 -12.15759 -11.77611 -11.71216 -11.55477 -11.50632 -11.48499 -10.89016 -10.82138 -10.63686 -10.04467 -9.63444 -9.03637 -8.49690 -5.99710 1.33433 1.35746 1.39839 1.46483 1.55960 1.78948 2.00622 2.04963 2.25198 2.84653 2.98321 3.16061 3.25111 3.48897 3.61191 3.87673 3.94543 4.03055 4.04632 4.23482 4.24705 4.26159 4.33055 4.38152 4.38649 4.46515 4.52568 4.57835 4.65408 4.69413 4.74375 4.75671 4.82493 4.93355 4.97219 4.99756 5.12508 5.22834 5.35106 5.42016 5.69294 5.90034 5.98848 6.07213 6.27687 6.45611 6.55799 6.56325 7.08379 7.12946 7.52297 8.08163 8.65472 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008768 B = 0.003005 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.737383 B = 9316.980979 C =11668.879089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.241 4.241 3 C 0.166 3.834 4 O -0.397 6.397 5 C 0.082 3.918 6 C -0.130 4.130 7 C 0.507 3.493 8 O -0.587 6.587 9 N -0.601 5.601 10 C 0.101 3.899 11 C -0.121 4.121 12 C 0.073 3.927 13 N -0.516 5.516 14 C 0.056 3.944 15 C 0.404 3.596 16 O -0.627 6.627 17 N -0.571 5.571 18 C -0.334 4.334 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.917 5.917 22 Si 0.989 3.011 23 H -0.276 1.276 24 H -0.267 1.267 25 H -0.272 1.272 26 C 0.050 3.950 27 C 0.130 3.870 28 H 0.257 0.743 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.021 0.979 40 H 0.056 0.944 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.078 0.922 46 H 0.004 0.996 47 H 0.112 0.888 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 -5.226 18.957 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.241 4.241 3 C 0.091 3.909 4 O -0.317 6.317 5 C 0.005 3.995 6 C -0.169 4.169 7 C 0.296 3.704 8 O -0.468 6.468 9 N -0.333 5.333 10 C -0.020 4.020 11 C -0.159 4.159 12 C -0.055 4.055 13 N -0.238 5.238 14 C -0.075 4.075 15 C 0.191 3.809 16 O -0.514 6.514 17 N -0.208 5.208 18 C -0.464 4.464 19 H 0.090 0.910 20 C -0.211 4.211 21 N -0.558 5.558 22 Si 0.813 3.187 23 H -0.201 1.201 24 H -0.191 1.191 25 H -0.197 1.197 26 C -0.080 4.080 27 C 0.006 3.994 28 H 0.273 0.727 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.122 0.878 34 H 0.150 0.850 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.230 0.770 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.022 0.978 47 H 0.130 0.870 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.864 -4.794 19.338 23.188 hybrid contribution 0.219 1.645 -1.854 2.489 sum -11.645 -3.149 17.484 21.242 Atomic orbital electron populations 1.25872 0.96745 0.95593 0.99073 1.23015 0.94736 1.03997 1.02401 1.19218 0.84911 0.84135 1.02677 1.87813 1.21550 1.27035 1.95327 1.22077 0.79673 0.96359 1.01347 1.21468 0.90932 0.97791 1.06711 1.20911 0.91119 0.83114 0.75212 1.90680 1.66511 1.37641 1.52000 1.47921 1.07139 1.06949 1.71289 1.22379 0.93578 0.84938 1.01117 1.21878 1.02399 0.97493 0.94161 1.21489 0.86888 0.98609 0.98508 1.59125 1.10814 1.36969 1.16880 1.22187 1.00172 0.96827 0.88322 1.22292 0.85584 0.89234 0.83764 1.90498 1.33272 1.52283 1.75384 1.42088 1.32271 1.30597 1.15873 1.19539 1.16851 1.11142 0.98860 0.91034 1.25995 0.95993 1.00604 0.98501 1.69652 1.23182 1.39859 1.23072 0.85056 0.78370 0.77863 0.77454 1.20146 1.19080 1.19735 1.21713 1.00197 0.90923 0.95193 1.21471 0.79515 1.03756 0.94620 0.72730 0.89051 0.90405 0.91581 0.94160 0.87797 0.84987 0.88058 0.89083 0.87857 0.89073 0.96079 0.92550 0.87571 0.86814 0.76969 0.91209 0.90331 0.97770 0.87003 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 19.25 74.32 1.43 -1.12 16 2 C -0.24 -5.11 13.73 31.13 0.43 -4.69 16 3 C 0.17 3.43 6.41 70.18 0.45 3.88 16 4 O -0.40 -9.74 10.30 -148.98 -1.53 -11.28 16 5 C 0.08 2.03 5.23 71.98 0.38 2.41 16 6 C -0.13 -2.91 4.41 29.85 0.13 -2.77 16 7 C 0.51 14.86 7.63 87.66 0.67 15.53 16 8 O -0.59 -22.35 15.41 -3.04 -0.05 -22.40 16 9 N -0.60 -14.90 2.18 -817.68 -1.78 -16.69 16 10 C 0.10 1.65 5.99 86.45 0.52 2.17 16 11 C -0.12 -2.16 5.78 30.31 0.18 -1.99 16 12 C 0.07 2.15 4.13 85.87 0.35 2.51 16 13 N -0.52 -15.77 3.99 -916.06 -3.66 -19.42 16 14 C 0.06 1.90 5.58 85.56 0.48 2.38 16 15 C 0.40 19.19 7.22 87.66 0.63 19.82 16 16 O -0.63 -34.52 12.19 -3.07 -0.04 -34.56 16 17 N -0.57 -29.68 5.29 -306.99 -1.62 -31.30 16 18 C -0.33 -19.40 9.68 84.04 0.81 -18.58 16 19 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 20 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 21 N -0.92 -50.06 13.05 21.67 0.28 -49.78 16 22 Si 0.99 44.07 29.55 68.60 2.03 46.09 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 C 0.05 1.68 4.93 87.93 0.43 2.11 16 27 C 0.13 3.38 5.52 87.31 0.48 3.86 16 28 H 0.26 1.79 7.80 -4.43 -0.03 1.76 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 32 H 0.04 1.16 8.10 -2.38 -0.02 1.14 16 33 H 0.10 2.34 7.41 -2.39 -0.02 2.33 16 34 H 0.13 2.07 8.04 -2.39 -0.02 2.05 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.33 5.87 -2.38 -0.01 1.31 16 37 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.09 1.47 7.98 -2.39 -0.02 1.45 16 39 H 0.02 0.80 6.22 -2.39 -0.01 0.78 16 40 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 41 H 0.11 3.20 7.92 -2.39 -0.02 3.18 16 42 H 0.11 3.32 7.94 -2.38 -0.02 3.30 16 43 H 0.40 19.52 7.90 -92.71 -0.73 18.78 16 44 H 0.28 14.24 8.31 -92.72 -0.77 13.47 16 45 H 0.08 2.48 7.85 -2.39 -0.02 2.46 16 46 H 0.00 0.19 6.22 -2.39 -0.01 0.17 16 47 H 0.11 2.19 8.11 -2.39 -0.02 2.17 16 48 H 0.07 2.10 7.28 -2.39 -0.02 2.08 16 Total: -1.00 -79.37 392.61 1.70 -77.67 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: 0.24 Total: 36.27 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: 7.84 Total: 25.40 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -6.78 Total: -117.19 kcal Atomic # 8 Polarization: -66.62 SS G_CDS: -1.62 Total: -68.24 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -79.37 1.70 -77.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195823798.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.783 kcal (2) G-P(sol) polarization free energy of solvation -79.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds