Wall clock time and date at job start Tue Mar 31 2020 22:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46691 * 2 1 4 4 O 1.42901 * 109.46746 * 180.02562 * 3 2 1 5 5 C 1.35648 * 116.99559 * 180.02562 * 4 3 2 6 6 C 1.39341 * 120.54468 * 0.26281 * 5 4 3 7 7 C 1.38300 * 118.43765 * 180.26729 * 6 5 4 8 8 C 1.38766 * 119.44734 * 359.72811 * 7 6 5 9 9 N 1.31373 * 121.06833 * 0.02562 * 8 7 6 10 10 C 1.32860 * 121.69139 * 359.97438 * 9 8 7 11 11 C 1.47840 * 119.78094 * 180.02562 * 10 9 8 12 12 O 1.21555 * 120.00144 * 186.47778 * 11 10 9 13 13 N 1.34774 * 119.99940 * 6.47683 * 11 10 9 14 14 C 1.46510 * 119.99923 * 357.27794 * 13 11 10 15 15 C 1.46500 * 120.00253 * 177.28269 * 13 11 10 16 16 C 1.53004 * 109.47270 * 89.99545 * 15 13 11 17 17 H 1.08996 * 109.46665 * 60.00276 * 16 15 13 18 18 O 1.42895 * 109.47272 * 300.00310 * 16 15 13 19 19 C 1.52995 * 109.46880 * 180.02562 * 16 15 13 20 20 N 1.46504 * 109.46820 * 185.00044 * 19 16 15 21 21 C 1.36937 * 119.99768 * 179.72469 * 20 19 16 22 22 H 1.08003 * 120.00190 * 0.27322 * 21 20 19 23 23 C 1.38813 * 119.99700 * 180.27583 * 21 20 19 24 24 N 1.31619 * 120.00573 * 0.02562 * 23 21 20 25 25 Si 1.86811 * 119.99807 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46913 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46730 * 120.00180 * 25 23 21 28 28 H 1.48500 * 109.47009 * 240.00075 * 25 23 21 29 29 H 1.09003 * 109.47169 * 300.00038 * 1 2 3 30 30 H 1.09000 * 109.47269 * 60.00449 * 1 2 3 31 31 H 1.09002 * 109.46682 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47086 * 240.00100 * 2 1 3 33 33 H 1.09000 * 109.47269 * 119.99551 * 2 1 3 34 34 H 1.08993 * 109.47274 * 60.00215 * 3 2 1 35 35 H 1.09000 * 109.46897 * 299.99778 * 3 2 1 36 36 H 1.07996 * 120.78201 * 359.97401 * 6 5 4 37 37 H 1.08004 * 120.27518 * 179.75250 * 7 6 5 38 38 H 1.08001 * 119.46367 * 180.02562 * 8 7 6 39 39 H 1.08996 * 109.46828 * 276.12004 * 14 13 11 40 40 H 1.08996 * 109.46902 * 36.12784 * 14 13 11 41 41 H 1.09005 * 109.46593 * 156.12294 * 14 13 11 42 42 H 1.08996 * 109.46617 * 329.99744 * 15 13 11 43 43 H 1.09001 * 109.47245 * 209.99786 * 15 13 11 44 44 H 0.96705 * 114.00028 * 300.00026 * 18 16 15 45 45 H 1.09000 * 109.47355 * 65.00517 * 19 16 15 46 46 H 1.09001 * 109.47656 * 304.99784 * 19 16 15 47 47 H 0.96996 * 120.00199 * 0.02562 * 20 19 16 48 48 H 0.96996 * 120.00107 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0847 2.6513 -0.0001 6 6 3.3368 3.8270 0.0064 7 6 4.0094 5.0354 0.0009 8 6 5.3970 5.0438 -0.0051 9 7 6.0818 3.9226 -0.0061 10 6 5.4808 2.7377 -0.0010 11 6 6.2931 1.5024 -0.0019 12 8 5.7525 0.4197 -0.1160 13 7 7.6328 1.5768 0.1239 14 6 8.2899 2.8840 0.2014 15 6 8.4323 0.3506 0.1829 16 6 8.8443 -0.0583 -1.2327 17 1 9.4349 0.7390 -1.6837 18 8 7.6751 -0.2894 -2.0211 19 6 9.6786 -1.3393 -1.1711 20 7 10.1730 -1.6650 -2.5112 21 6 10.9531 -2.7741 -2.7022 22 1 11.2004 -3.4111 -1.8658 23 6 11.4263 -3.0796 -3.9710 24 7 11.1255 -2.3031 -4.9903 25 14 12.4912 -4.5921 -4.2316 26 1 12.6825 -5.2919 -2.9359 27 1 11.8253 -5.5064 -5.1938 28 1 13.8116 -4.1807 -4.7723 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 2.2573 3.7953 0.0107 37 1 3.4593 5.9648 0.0017 38 1 5.9226 5.9873 -0.0089 39 1 8.4502 3.2703 -0.8051 40 1 7.6587 3.5753 0.7598 41 1 9.2496 2.7787 0.7074 42 1 7.8416 -0.4467 0.6340 43 1 9.3241 0.5268 0.7843 44 1 7.1011 -0.9880 -1.6781 45 1 9.0605 -2.1581 -0.8029 46 1 10.5234 -1.1908 -0.4984 47 1 9.9513 -1.0928 -3.2623 48 1 11.4558 -2.5168 -5.8768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278804993.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:57 Heat of formation + Delta-G solvation = -55.686671 kcal Electronic energy + Delta-G solvation = -29528.788500 eV Core-core repulsion = 25392.608532 eV Total energy + Delta-G solvation = -4136.179968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24458 -39.37904 -38.58087 -37.03152 -35.10979 -34.27350 -33.88115 -32.72696 -31.18937 -30.82485 -29.20748 -27.07016 -26.67153 -25.83230 -24.21844 -23.36711 -22.52908 -21.74793 -21.02885 -19.99121 -18.39711 -17.60587 -17.11151 -17.05519 -16.72205 -16.21364 -15.84193 -15.53942 -15.05352 -14.86453 -14.69395 -14.49497 -14.28067 -14.17001 -13.81024 -13.49573 -13.23714 -13.11286 -12.80136 -12.70664 -12.52814 -12.38898 -12.30531 -12.13536 -11.98325 -11.87726 -11.35420 -11.29164 -11.01694 -10.85888 -10.76947 -10.50440 -10.17229 -10.08348 -10.05121 -9.68363 -9.49697 -9.33235 -8.81692 -8.76029 -8.21734 -6.82506 -5.66707 -2.95607 0.41810 0.88783 2.72282 2.77215 3.06017 3.49000 3.53828 3.56686 3.66551 3.98477 4.20894 4.31302 4.49935 4.51957 4.61838 4.65860 4.76680 4.81046 4.95159 5.01050 5.03455 5.11525 5.22546 5.26490 5.39216 5.44590 5.55412 5.59879 5.63272 5.64152 5.73120 5.77425 5.82392 5.88539 5.90361 5.97343 6.16445 6.25754 6.36860 6.63520 6.71400 6.88135 6.93793 7.39570 7.56813 7.77049 8.32901 8.39771 8.51945 9.62760 10.22178 10.57960 11.55920 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.002521 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.315006 B =11101.859228 C =12518.078038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.051 3.949 4 O -0.269 6.269 5 C 0.142 3.858 6 C -0.178 4.178 7 C -0.109 4.109 8 C 0.048 3.952 9 N -0.411 5.411 10 C 0.050 3.950 11 C 0.574 3.426 12 O -0.511 6.511 13 N -0.592 5.592 14 C 0.074 3.926 15 C 0.086 3.914 16 C 0.087 3.913 17 H 0.095 0.905 18 O -0.547 6.547 19 C 0.126 3.874 20 N -0.726 5.726 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.930 5.930 25 Si 0.907 3.093 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.165 0.835 39 H 0.055 0.945 40 H 0.106 0.894 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.374 0.626 45 H 0.021 0.979 46 H 0.024 0.976 47 H 0.388 0.612 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.997 17.954 15.729 31.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.024 4.024 4 O -0.178 6.178 5 C 0.090 3.910 6 C -0.204 4.204 7 C -0.129 4.129 8 C -0.111 4.111 9 N -0.124 5.124 10 C -0.089 4.089 11 C 0.360 3.640 12 O -0.386 6.386 13 N -0.324 5.324 14 C -0.068 4.068 15 C -0.038 4.038 16 C 0.026 3.974 17 H 0.113 0.887 18 O -0.352 6.352 19 C -0.003 4.003 20 N -0.370 5.370 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.182 0.818 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.221 0.779 45 H 0.039 0.961 46 H 0.042 0.958 47 H 0.222 0.778 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.954 17.449 15.342 30.627 hybrid contribution -0.650 -0.679 -0.186 0.958 sum -20.604 16.771 15.156 30.586 Atomic orbital electron populations 1.21695 0.94296 1.02686 1.01921 1.21462 0.95674 0.94405 1.04539 1.23041 0.78583 0.99690 1.01134 1.86421 1.20822 1.24526 1.86076 1.19978 0.92217 0.85739 0.93019 1.21752 1.01043 0.91892 1.05755 1.22179 0.95821 0.98324 0.96587 1.22850 0.91477 0.96835 0.99977 1.68184 1.38027 0.97504 1.08660 1.20781 0.88612 0.93038 1.06457 1.17483 0.81776 0.87142 0.77605 1.90790 1.71261 1.27825 1.48697 1.47498 1.05601 1.07682 1.71627 1.22404 0.97564 0.84244 1.02634 1.22309 0.95621 0.87097 0.98748 1.22474 0.87086 0.97965 0.89861 0.88719 1.86546 1.35061 1.60138 1.53473 1.21250 0.95275 0.93648 0.90087 1.42270 1.60584 1.30423 1.03752 1.19279 1.22673 1.01518 0.93539 0.91232 1.24763 1.01466 0.99151 0.95741 1.69697 1.49831 1.39035 0.99340 0.86115 0.79945 0.82585 0.77542 1.20596 1.21897 1.21912 0.92563 0.92430 0.91563 0.90231 0.90530 0.92066 0.91910 0.83809 0.84112 0.81795 0.92686 0.87678 0.92429 0.89625 0.89606 0.77898 0.96119 0.95825 0.77754 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -1.00 6.30 -26.73 -0.17 -1.17 16 3 C 0.05 0.43 4.76 37.16 0.18 0.60 16 4 O -0.27 -3.45 8.22 -40.51 -0.33 -3.79 16 5 C 0.14 1.70 6.71 -38.56 -0.26 1.45 16 6 C -0.18 -1.46 9.13 -39.15 -0.36 -1.82 16 7 C -0.11 -0.72 10.10 -39.36 -0.40 -1.12 16 8 C 0.05 0.38 11.17 -17.55 -0.20 0.19 16 9 N -0.41 -4.64 6.00 -9.71 -0.06 -4.70 16 10 C 0.05 0.68 6.64 -82.88 -0.55 0.13 16 11 C 0.57 9.26 7.20 -12.33 -0.09 9.17 16 12 O -0.51 -9.46 13.37 -22.46 -0.30 -9.76 16 13 N -0.59 -8.65 2.83 -182.69 -0.52 -9.17 16 14 C 0.07 0.88 9.39 59.85 0.56 1.44 16 15 C 0.09 1.27 5.18 -4.04 -0.02 1.25 16 16 C 0.09 1.61 3.27 -26.73 -0.09 1.52 16 17 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 18 O -0.55 -11.36 12.03 -46.97 -0.57 -11.93 16 19 C 0.13 2.69 5.90 -4.04 -0.02 2.67 16 20 N -0.73 -19.77 5.55 -59.91 -0.33 -20.10 16 21 C -0.24 -7.04 9.99 -15.06 -0.15 -7.19 16 22 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 24 N -0.93 -29.64 13.06 55.49 0.72 -28.92 16 25 Si 0.91 23.26 29.55 -169.99 -5.02 18.24 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 35 H 0.06 0.44 7.71 -51.93 -0.40 0.04 16 36 H 0.14 0.79 6.46 -52.49 -0.34 0.45 16 37 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.11 1.14 5.17 -53.08 -0.27 0.87 16 41 H 0.06 0.57 7.83 -51.93 -0.41 0.17 16 42 H 0.09 1.31 7.46 -51.93 -0.39 0.92 16 43 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 44 H 0.37 7.31 8.37 45.56 0.38 7.69 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.39 11.40 7.67 -40.82 -0.31 11.09 16 48 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 394.83 15.07 5.95 5.95 Total: -1.00 -37.09 394.83 -8.49 -45.58 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -6.74 Total: 12.50 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -1.29 Total: 6.09 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -0.18 Total: -62.89 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.20 Total: -25.48 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.09 -8.49 -45.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278804993.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.106 kcal (2) G-P(sol) polarization free energy of solvation -37.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds