Wall clock time and date at job start Tue Mar 31 2020 22:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00298 * 2 1 4 4 O 1.42900 * 109.47088 * 135.00684 * 3 2 1 5 5 C 1.42901 * 114.00009 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46932 * 179.97438 * 5 4 3 7 7 O 1.21274 * 120.00416 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99601 * 179.97438 * 6 5 4 9 9 C 1.47154 * 120.68130 * 180.02562 * 8 6 5 10 10 C 1.53893 * 108.04097 * 132.61187 * 9 8 6 11 11 H 1.09001 * 112.11567 * 182.65384 * 10 9 8 12 12 C 1.54541 * 107.80917 * 306.64787 * 10 9 8 13 13 C 1.54256 * 104.94223 * 88.97444 * 12 10 9 14 14 C 1.54546 * 104.93768 * 359.97438 * 13 12 10 15 15 H 1.09003 * 112.20803 * 146.47347 * 14 13 12 16 16 C 1.47146 * 120.68287 * 359.72325 * 8 6 5 17 17 N 1.48731 * 107.17299 * 58.44054 * 10 9 8 18 18 C 1.46900 * 110.99476 * 167.47649 * 17 10 9 19 19 C 1.50703 * 109.46810 * 176.82066 * 18 17 10 20 20 O 1.21298 * 119.99958 * 6.19248 * 19 18 17 21 21 N 1.34782 * 120.00198 * 186.20150 * 19 18 17 22 22 C 1.37091 * 119.99900 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00536 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99827 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99912 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00042 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47130 * 90.00082 * 26 24 22 28 28 H 1.48506 * 109.46975 * 209.99918 * 26 24 22 29 29 H 1.48495 * 109.47275 * 329.99764 * 26 24 22 30 30 H 1.07998 * 120.00172 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99610 * 359.97438 * 1 2 3 32 32 H 1.08003 * 119.99610 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47103 * 15.00704 * 3 2 1 34 34 H 1.08997 * 109.47434 * 255.00737 * 3 2 1 35 35 H 1.09006 * 109.46872 * 60.00029 * 5 4 3 36 36 H 1.08993 * 109.47004 * 299.99829 * 5 4 3 37 37 H 1.08995 * 109.74341 * 252.25043 * 9 8 6 38 38 H 1.09006 * 109.74572 * 12.92665 * 9 8 6 39 39 H 1.09001 * 110.34416 * 207.83687 * 12 10 9 40 40 H 1.08998 * 110.35157 * 329.99462 * 12 10 9 41 41 H 1.09000 * 110.34808 * 118.85905 * 13 12 10 42 42 H 1.08998 * 110.34734 * 241.13039 * 13 12 10 43 43 H 1.08998 * 109.74924 * 347.01920 * 16 8 6 44 44 H 1.09004 * 109.75115 * 107.75291 * 16 8 6 45 45 H 1.09001 * 109.47306 * 296.81563 * 18 17 10 46 46 H 1.08993 * 109.47358 * 56.81775 * 18 17 10 47 47 H 0.96998 * 119.99581 * 359.97438 * 21 19 18 48 48 H 0.97004 * 120.00238 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9079 2.4351 1.0328 6 6 4.9936 2.2568 2.0626 7 8 5.0888 1.2107 2.6686 8 7 5.8588 3.2602 2.3102 9 6 6.9249 3.1023 3.3122 10 6 8.2432 3.5911 2.6865 11 1 9.0903 3.4601 3.3598 12 6 8.4383 2.8413 1.3493 13 6 7.7267 3.7151 0.2959 14 6 7.1634 4.9159 1.0891 15 1 7.1672 5.8350 0.5031 16 6 5.7608 4.5336 1.5795 17 7 8.0403 5.0093 2.2870 18 6 9.3195 5.6506 1.9547 19 6 9.0673 7.0588 1.4810 20 8 7.9483 7.5244 1.5314 21 7 10.0849 7.8009 1.0011 22 6 9.8553 9.0817 0.5697 23 1 8.8589 9.4961 0.6139 24 6 10.9045 9.8470 0.0755 25 7 12.1170 9.3431 0.0221 26 14 10.5916 11.5920 -0.5131 27 1 10.7653 12.5353 0.6205 28 1 11.5549 11.9310 -1.5913 29 1 9.2059 11.6968 -1.0365 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9354 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3857 2.1160 0.2661 34 1 2.4755 1.4868 -0.9926 35 1 3.2680 3.2692 1.3206 36 1 4.3581 2.6406 0.0616 37 1 6.6924 3.6987 4.1943 38 1 7.0157 2.0524 3.5910 39 1 9.4993 2.7540 1.1151 40 1 7.9792 1.8539 1.3978 41 1 8.4380 4.0572 -0.4559 42 1 6.9162 3.1578 -0.1738 43 1 5.0923 4.4182 0.7264 44 1 5.3815 5.3108 2.2430 45 1 9.9552 5.6735 2.8399 46 1 9.8154 5.0852 1.1659 47 1 10.9797 7.4287 0.9611 48 1 12.8496 9.8774 -0.3225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481378428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:59 Heat of formation + Delta-G solvation = -65.549188 kcal Electronic energy + Delta-G solvation = -29868.220917 eV Core-core repulsion = 25731.613279 eV Total energy + Delta-G solvation = -4136.607639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14808 -39.29220 -38.07947 -37.57625 -34.68307 -34.18452 -33.94035 -31.73734 -31.42516 -30.98597 -29.10879 -27.60202 -26.06074 -25.39538 -24.54968 -23.82552 -20.82223 -20.62619 -20.23356 -19.34339 -18.52298 -17.93282 -17.62771 -16.83879 -16.63359 -16.23178 -16.00143 -15.75753 -14.97603 -14.93998 -14.64307 -14.59190 -14.27887 -13.96723 -13.74826 -13.60056 -13.53932 -13.32122 -12.76101 -12.58447 -12.47757 -12.30683 -12.22127 -11.95085 -11.64715 -11.40835 -11.34459 -11.18272 -11.04428 -10.98258 -10.76147 -10.44231 -10.43924 -10.30638 -10.27242 -9.80796 -9.65828 -9.53026 -8.86558 -8.40764 -8.17869 -8.01509 -6.47282 -3.88317 1.75844 2.51006 2.63789 3.13480 3.22797 3.27656 3.64017 3.83999 3.86336 4.15626 4.32444 4.60423 4.65019 4.72700 4.76978 4.83024 4.86615 4.88930 4.91948 5.01477 5.07998 5.13918 5.19763 5.20544 5.29563 5.45187 5.48492 5.54681 5.61441 5.75239 5.80168 5.83859 5.89784 5.92511 5.97626 6.11800 6.19332 6.19356 6.24387 6.26940 6.45727 6.75368 6.97824 7.10598 7.35289 7.49608 8.00032 8.08764 8.54950 9.11940 9.48173 9.98965 10.70215 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.002309 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.025753 B =12122.800546 C =13039.336133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.044 3.956 6 C 0.517 3.483 7 O -0.528 6.528 8 N -0.602 5.602 9 C 0.130 3.870 10 C 0.045 3.955 11 H 0.105 0.895 12 C -0.146 4.146 13 C -0.149 4.149 14 C 0.053 3.947 15 H 0.128 0.872 16 C 0.121 3.879 17 N -0.477 5.477 18 C 0.035 3.965 19 C 0.442 3.558 20 O -0.581 6.581 21 N -0.562 5.562 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.900 5.900 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.050 0.950 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.183 -15.120 -0.479 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.167 4.167 3 C 0.009 3.991 4 O -0.279 6.279 5 C -0.036 4.036 6 C 0.304 3.696 7 O -0.404 6.404 8 N -0.338 5.338 9 C 0.008 3.992 10 C -0.065 4.065 11 H 0.123 0.877 12 C -0.185 4.185 13 C -0.188 4.188 14 C -0.056 4.056 15 H 0.145 0.855 16 C -0.002 4.002 17 N -0.199 5.199 18 C -0.096 4.096 19 C 0.228 3.772 20 O -0.465 6.465 21 N -0.198 5.198 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.541 5.541 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.068 0.932 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.914 -15.096 0.367 20.533 hybrid contribution 1.043 0.542 -1.275 1.734 sum -12.871 -14.554 -0.908 19.450 Atomic orbital electron populations 1.23843 0.95501 1.02338 1.00067 1.22713 0.95610 0.98172 1.00190 1.21623 0.88793 0.96227 0.92423 1.88029 1.44318 1.35041 1.60480 1.22271 0.93298 0.89148 0.98837 1.20104 0.82418 0.83493 0.83611 1.90703 1.72440 1.26805 1.50457 1.48089 1.30893 1.14501 1.40281 1.21782 0.84942 1.02046 0.90433 1.23506 0.97614 0.88492 0.96874 0.87681 1.22836 1.00608 0.99651 0.95411 1.22910 1.00260 0.97094 0.98585 1.23475 0.92356 0.98688 0.91069 0.85455 1.21923 0.97301 0.84852 0.96132 1.65107 1.12214 1.12514 1.30093 1.21977 0.91749 0.95076 1.00837 1.19694 0.86028 0.87163 0.84344 1.90498 1.22919 1.73071 1.60030 1.41885 1.09544 1.13430 1.54954 1.19685 0.96676 0.88699 1.37876 0.87877 1.25270 0.94740 1.00325 0.97572 1.69608 0.99925 1.38098 1.46502 0.85861 0.78299 0.81798 0.78348 1.20379 1.20948 1.19425 0.87718 0.88371 0.86441 0.92477 0.92032 0.90100 0.90210 0.90525 0.88978 0.91618 0.91210 0.91420 0.91718 0.90185 0.89666 0.89124 0.93156 0.77489 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 14.31 29.01 0.42 -0.78 16 2 C -0.15 -1.22 9.89 -36.03 -0.36 -1.58 16 3 C 0.09 0.73 6.35 36.00 0.23 0.96 16 4 O -0.36 -4.35 9.86 -55.14 -0.54 -4.89 16 5 C 0.04 0.45 4.80 36.01 0.17 0.63 16 6 C 0.52 6.87 7.78 -10.98 -0.09 6.79 16 7 O -0.53 -9.02 15.96 -14.35 -0.23 -9.25 16 8 N -0.60 -7.40 2.26 -171.83 -0.39 -7.78 16 9 C 0.13 1.59 5.90 -3.22 -0.02 1.58 16 10 C 0.04 0.55 3.66 -65.42 -0.24 0.31 16 11 H 0.11 1.13 8.11 -51.93 -0.42 0.71 16 12 C -0.15 -1.72 5.52 -25.26 -0.14 -1.86 16 13 C -0.15 -1.86 5.53 -25.26 -0.14 -2.00 16 14 C 0.05 0.76 3.12 -65.66 -0.20 0.56 16 15 H 0.13 2.21 5.97 -51.93 -0.31 1.90 16 16 C 0.12 1.44 5.74 -3.47 -0.02 1.42 16 17 N -0.48 -7.21 4.76 -214.48 -1.02 -8.23 16 18 C 0.04 0.58 5.32 -4.97 -0.03 0.56 16 19 C 0.44 9.73 7.22 -10.98 -0.08 9.65 16 20 O -0.58 -14.44 14.11 5.54 0.08 -14.36 16 21 N -0.56 -13.55 5.29 -10.96 -0.06 -13.61 16 22 C -0.30 -8.02 9.68 -14.94 -0.14 -8.16 16 23 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -23.83 13.05 55.50 0.72 -23.11 16 26 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 29 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 30 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.10 0.55 7.90 -52.48 -0.41 0.14 16 32 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.06 0.40 7.86 -51.93 -0.41 0.00 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 36 H 0.08 0.66 7.58 -51.93 -0.39 0.26 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.15 7.10 -51.93 -0.37 0.78 16 39 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 41 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.06 0.73 7.83 -51.93 -0.41 0.33 16 43 H 0.08 0.73 6.08 -51.93 -0.32 0.42 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.05 0.77 6.99 -51.93 -0.36 0.41 16 47 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 48 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 386.05 15.07 5.82 5.82 Total: -1.00 -32.45 386.05 -8.81 -41.26 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -7.44 Total: 10.19 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -0.73 Total: 8.55 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.74 Total: -52.73 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.69 Total: -28.51 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.45 -8.81 -41.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481378428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.287 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds