Wall clock time and date at job start Tue Mar 31 2020 22:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00298 * 2 1 4 4 O 1.42900 * 109.47088 * 135.00684 * 3 2 1 5 5 C 1.42901 * 114.00009 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46932 * 179.97438 * 5 4 3 7 7 O 1.21274 * 120.00416 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99601 * 179.97438 * 6 5 4 9 9 C 1.47154 * 120.68130 * 180.02562 * 8 6 5 10 10 C 1.53893 * 108.04097 * 132.61187 * 9 8 6 11 11 H 1.09001 * 112.11567 * 182.65384 * 10 9 8 12 12 C 1.54541 * 107.80917 * 306.64787 * 10 9 8 13 13 C 1.54256 * 104.94223 * 88.97444 * 12 10 9 14 14 C 1.54546 * 104.93768 * 359.97438 * 13 12 10 15 15 H 1.09003 * 112.20803 * 146.47347 * 14 13 12 16 16 C 1.47146 * 120.68287 * 359.72325 * 8 6 5 17 17 N 1.48731 * 107.17299 * 58.44054 * 10 9 8 18 18 C 1.46900 * 110.99476 * 167.47649 * 17 10 9 19 19 C 1.50703 * 109.46810 * 176.82066 * 18 17 10 20 20 O 1.21298 * 119.99958 * 6.19248 * 19 18 17 21 21 N 1.34782 * 120.00198 * 186.20150 * 19 18 17 22 22 C 1.37091 * 119.99900 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00536 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99827 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99912 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00042 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47130 * 90.00082 * 26 24 22 28 28 H 1.48506 * 109.46975 * 209.99918 * 26 24 22 29 29 H 1.48495 * 109.47275 * 329.99764 * 26 24 22 30 30 H 1.07998 * 120.00172 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99610 * 359.97438 * 1 2 3 32 32 H 1.08003 * 119.99610 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47103 * 15.00704 * 3 2 1 34 34 H 1.08997 * 109.47434 * 255.00737 * 3 2 1 35 35 H 1.09006 * 109.46872 * 60.00029 * 5 4 3 36 36 H 1.08993 * 109.47004 * 299.99829 * 5 4 3 37 37 H 1.08995 * 109.74341 * 252.25043 * 9 8 6 38 38 H 1.09006 * 109.74572 * 12.92665 * 9 8 6 39 39 H 1.09001 * 110.34416 * 207.83687 * 12 10 9 40 40 H 1.08998 * 110.35157 * 329.99462 * 12 10 9 41 41 H 1.09000 * 110.34808 * 118.85905 * 13 12 10 42 42 H 1.08998 * 110.34734 * 241.13039 * 13 12 10 43 43 H 1.08998 * 109.74924 * 347.01920 * 16 8 6 44 44 H 1.09004 * 109.75115 * 107.75291 * 16 8 6 45 45 H 1.09001 * 109.47306 * 296.81563 * 18 17 10 46 46 H 1.08993 * 109.47358 * 56.81775 * 18 17 10 47 47 H 0.96998 * 119.99581 * 359.97438 * 21 19 18 48 48 H 0.97004 * 120.00238 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9079 2.4351 1.0328 6 6 4.9936 2.2568 2.0626 7 8 5.0888 1.2107 2.6686 8 7 5.8588 3.2602 2.3102 9 6 6.9249 3.1023 3.3122 10 6 8.2432 3.5911 2.6865 11 1 9.0903 3.4601 3.3598 12 6 8.4383 2.8413 1.3493 13 6 7.7267 3.7151 0.2959 14 6 7.1634 4.9159 1.0891 15 1 7.1672 5.8350 0.5031 16 6 5.7608 4.5336 1.5795 17 7 8.0403 5.0093 2.2870 18 6 9.3195 5.6506 1.9547 19 6 9.0673 7.0588 1.4810 20 8 7.9483 7.5244 1.5314 21 7 10.0849 7.8009 1.0011 22 6 9.8553 9.0817 0.5697 23 1 8.8589 9.4961 0.6139 24 6 10.9045 9.8470 0.0755 25 7 12.1170 9.3431 0.0221 26 14 10.5916 11.5920 -0.5131 27 1 10.7653 12.5353 0.6205 28 1 11.5549 11.9310 -1.5913 29 1 9.2059 11.6968 -1.0365 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9354 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3857 2.1160 0.2661 34 1 2.4755 1.4868 -0.9926 35 1 3.2680 3.2692 1.3206 36 1 4.3581 2.6406 0.0616 37 1 6.6924 3.6987 4.1943 38 1 7.0157 2.0524 3.5910 39 1 9.4993 2.7540 1.1151 40 1 7.9792 1.8539 1.3978 41 1 8.4380 4.0572 -0.4559 42 1 6.9162 3.1578 -0.1738 43 1 5.0923 4.4182 0.7264 44 1 5.3815 5.3108 2.2430 45 1 9.9552 5.6735 2.8399 46 1 9.8154 5.0852 1.1659 47 1 10.9797 7.4287 0.9611 48 1 12.8496 9.8774 -0.3225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481378428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:58 Heat of formation + Delta-G solvation = -87.705206 kcal Electronic energy + Delta-G solvation = -29869.181675 eV Core-core repulsion = 25731.613279 eV Total energy + Delta-G solvation = -4137.568396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.22289 -40.44743 -39.52014 -38.59637 -36.04804 -35.61488 -34.77831 -33.27139 -32.75173 -32.27702 -30.02248 -28.76209 -27.21418 -26.46779 -25.58217 -25.26426 -21.88561 -21.59987 -20.99604 -20.87993 -19.93777 -19.44942 -18.58418 -17.80350 -17.65621 -17.46709 -16.94850 -16.83661 -16.49144 -16.14966 -15.91430 -15.71575 -15.58859 -15.13575 -15.07613 -14.88122 -14.62404 -14.09099 -13.97709 -13.61579 -13.56007 -13.43516 -13.34549 -13.15656 -13.10167 -12.87475 -12.53374 -12.38044 -12.21642 -12.11739 -12.04054 -11.89137 -11.87831 -11.43275 -11.40786 -11.00103 -10.81470 -10.27077 -10.26583 -9.97911 -9.82037 -9.37204 -8.44302 -5.92242 1.18473 1.39213 1.43454 1.51031 1.55324 1.75075 2.08366 2.29541 2.73372 2.87267 3.23377 3.30263 3.45050 3.69729 3.77910 3.87833 3.99420 4.04253 4.09389 4.17676 4.20542 4.22878 4.31396 4.32583 4.42149 4.44358 4.53205 4.57958 4.60474 4.62547 4.73898 4.76916 4.85891 4.89507 4.93806 4.98359 5.09862 5.22978 5.42058 5.43751 5.65931 5.69548 5.83769 5.87518 6.05214 6.10237 6.36243 6.62722 7.08660 7.15555 7.59724 8.14341 8.73001 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.002309 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.025753 B =12122.800546 C =13039.336133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.176 4.176 3 C 0.082 3.918 4 O -0.393 6.393 5 C 0.044 3.956 6 C 0.514 3.486 7 O -0.572 6.572 8 N -0.597 5.597 9 C 0.130 3.870 10 C 0.050 3.950 11 H 0.124 0.876 12 C -0.139 4.139 13 C -0.143 4.143 14 C 0.050 3.950 15 H 0.094 0.906 16 C 0.127 3.873 17 N -0.494 5.494 18 C 0.049 3.951 19 C 0.445 3.555 20 O -0.611 6.611 21 N -0.575 5.575 22 C -0.328 4.328 23 H 0.082 0.918 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.991 3.009 27 H -0.274 1.274 28 H -0.274 1.274 29 H -0.271 1.271 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.847 -15.451 -1.040 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.007 3.993 4 O -0.312 6.312 5 C -0.035 4.035 6 C 0.303 3.697 7 O -0.451 6.451 8 N -0.331 5.331 9 C 0.007 3.993 10 C -0.059 4.059 11 H 0.142 0.858 12 C -0.178 4.178 13 C -0.183 4.183 14 C -0.059 4.059 15 H 0.112 0.888 16 C 0.004 3.996 17 N -0.216 5.216 18 C -0.083 4.083 19 C 0.232 3.768 20 O -0.497 6.497 21 N -0.212 5.212 22 C -0.457 4.457 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.815 3.185 27 H -0.199 1.199 28 H -0.199 1.199 29 H -0.196 1.196 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.093 0.907 45 H 0.126 0.874 46 H 0.084 0.916 47 H 0.228 0.772 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.574 -15.430 -0.198 21.225 hybrid contribution 1.158 0.597 -1.065 1.683 sum -13.416 -14.832 -1.263 20.039 Atomic orbital electron populations 1.24063 0.95018 1.03510 0.97778 1.22774 0.96304 0.97977 1.02368 1.21807 0.88335 0.96766 0.92431 1.87990 1.45418 1.36052 1.61745 1.22375 0.92812 0.89411 0.98875 1.20681 0.82713 0.82711 0.83581 1.90682 1.73654 1.28469 1.52268 1.48105 1.30686 1.14395 1.39939 1.21780 0.85091 1.01901 0.90527 1.23573 0.98290 0.86570 0.97426 0.85814 1.22779 1.01067 0.99227 0.94761 1.22851 1.00564 0.96469 0.98376 1.23359 0.93715 0.97972 0.90902 0.88786 1.21899 0.96447 0.84285 0.96925 1.65124 1.11494 1.14381 1.30641 1.21827 0.93028 0.91588 1.01814 1.20631 0.84973 0.88817 0.82385 1.90477 1.24150 1.74368 1.60662 1.41952 1.10159 1.13120 1.55967 1.19643 0.96137 0.90323 1.39622 0.90050 1.26008 0.94398 1.03700 0.97286 1.69673 1.00401 1.39338 1.46846 0.84956 0.78134 0.77379 0.78065 1.19915 1.19872 1.19551 0.86625 0.87110 0.87450 0.90972 0.90689 0.87772 0.87791 0.90708 0.89081 0.90744 0.91270 0.92177 0.90309 0.87091 0.90725 0.87368 0.91559 0.77189 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 14.31 67.78 0.97 -0.95 16 2 C -0.18 -2.72 9.89 25.65 0.25 -2.47 16 3 C 0.08 1.25 6.35 71.24 0.45 1.71 16 4 O -0.39 -8.98 9.86 -129.94 -1.28 -10.26 16 5 C 0.04 0.81 4.80 71.24 0.34 1.16 16 6 C 0.51 13.00 7.78 87.66 0.68 13.68 16 7 O -0.57 -19.32 15.96 16.03 0.26 -19.07 16 8 N -0.60 -13.78 2.26 -815.94 -1.84 -15.62 16 9 C 0.13 3.01 5.90 86.56 0.51 3.52 16 10 C 0.05 1.13 3.66 45.39 0.17 1.30 16 11 H 0.12 2.34 8.11 -2.39 -0.02 2.32 16 12 C -0.14 -2.99 5.52 31.54 0.17 -2.82 16 13 C -0.14 -3.32 5.53 31.55 0.17 -3.14 16 14 C 0.05 1.37 3.12 45.23 0.14 1.51 16 15 H 0.09 3.29 5.97 -2.39 -0.01 3.27 16 16 C 0.13 2.83 5.74 86.40 0.50 3.32 16 17 N -0.49 -14.33 4.76 -832.47 -3.96 -18.30 16 18 C 0.05 1.56 5.32 85.56 0.46 2.02 16 19 C 0.44 19.70 7.22 87.66 0.63 20.33 16 20 O -0.61 -30.96 14.11 -3.09 -0.04 -31.00 16 21 N -0.57 -28.11 5.29 -306.97 -1.62 -29.73 16 22 C -0.33 -17.85 9.68 84.04 0.81 -17.04 16 23 H 0.08 4.71 7.16 -2.91 -0.02 4.68 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 25 N -0.92 -48.66 13.05 21.66 0.28 -48.37 16 26 Si 0.99 41.81 29.55 68.60 2.03 43.84 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 29 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 30 H 0.12 1.03 8.06 -2.91 -0.02 1.01 16 31 H 0.11 0.98 7.90 -2.91 -0.02 0.95 16 32 H 0.11 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.07 0.85 7.86 -2.39 -0.02 0.83 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 1.41 8.07 -2.38 -0.02 1.39 16 36 H 0.10 1.38 7.58 -2.39 -0.02 1.36 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 2.18 7.10 -2.38 -0.02 2.16 16 39 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 40 H 0.07 1.54 7.84 -2.39 -0.02 1.52 16 41 H 0.06 1.48 8.10 -2.39 -0.02 1.47 16 42 H 0.08 1.59 7.83 -2.39 -0.02 1.58 16 43 H 0.11 1.75 6.08 -2.39 -0.01 1.74 16 44 H 0.07 1.85 8.14 -2.38 -0.02 1.84 16 45 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 46 H 0.07 1.93 6.99 -2.39 -0.02 1.91 16 47 H 0.39 18.55 7.90 -92.71 -0.73 17.82 16 48 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -71.25 386.05 0.78 -70.47 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 0.24 Total: 36.20 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 6.73 Total: 21.85 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -7.14 Total: -112.02 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -1.07 Total: -60.33 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -71.25 0.78 -70.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481378428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.234 kcal (2) G-P(sol) polarization free energy of solvation -71.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds