Wall clock time and date at job start Tue Mar 31 2020 22:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 O 1.42899 * 109.47346 * 120.00014 * 2 1 3 5 5 C 1.35683 * 116.99865 * 89.99663 * 4 2 1 6 6 C 1.38897 * 119.62211 * 180.02562 * 5 4 2 7 7 C 1.39572 * 118.94591 * 180.02562 * 6 5 4 8 8 C 1.48167 * 120.89153 * 180.02562 * 7 6 5 9 9 O 1.21506 * 119.99879 * 219.50812 * 8 7 6 10 10 N 1.34776 * 120.00053 * 39.50450 * 8 7 6 11 11 C 1.46499 * 119.99875 * 355.89202 * 10 8 7 12 12 C 1.46496 * 120.00139 * 175.89624 * 10 8 7 13 13 C 1.53001 * 109.47046 * 89.99781 * 12 10 8 14 14 H 1.09000 * 109.46996 * 60.00537 * 13 12 10 15 15 O 1.42897 * 109.47427 * 300.00148 * 13 12 10 16 16 C 1.53003 * 109.46819 * 180.02562 * 13 12 10 17 17 N 1.46508 * 109.46927 * 185.00273 * 16 13 12 18 18 C 1.36933 * 119.99661 * 179.72529 * 17 16 13 19 19 H 1.08000 * 120.00473 * 0.26880 * 18 17 16 20 20 C 1.38820 * 119.99765 * 180.27763 * 18 17 16 21 21 N 1.31618 * 119.99914 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99925 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46931 * 89.99585 * 22 20 18 24 24 H 1.48496 * 109.47010 * 209.99337 * 22 20 18 25 25 H 1.48498 * 109.47270 * 329.99784 * 22 20 18 26 26 C 1.39969 * 118.21731 * 0.27302 * 7 6 5 27 27 C 1.37978 * 119.13272 * 359.48146 * 26 7 6 28 28 N 1.31904 * 120.97411 * 0.53221 * 27 26 7 29 29 H 1.08997 * 109.46961 * 299.99494 * 1 2 3 30 30 H 1.08993 * 109.46822 * 60.00289 * 1 2 3 31 31 H 1.09000 * 109.46958 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47328 * 239.99670 * 2 1 3 33 33 H 1.09001 * 109.47094 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47296 * 300.00060 * 3 2 1 35 35 H 1.09007 * 109.46874 * 60.00245 * 3 2 1 36 36 H 1.08000 * 120.52810 * 359.97438 * 6 5 4 37 37 H 1.08999 * 109.47492 * 274.71228 * 11 10 8 38 38 H 1.09001 * 109.47028 * 34.71337 * 11 10 8 39 39 H 1.09002 * 109.47038 * 154.70841 * 11 10 8 40 40 H 1.09005 * 109.47045 * 329.99809 * 12 10 8 41 41 H 1.08996 * 109.47312 * 210.00174 * 12 10 8 42 42 H 0.96701 * 113.99778 * 300.00002 * 15 13 12 43 43 H 1.08995 * 109.47428 * 65.00312 * 16 13 12 44 44 H 1.09006 * 109.47063 * 304.99763 * 16 13 12 45 45 H 0.96997 * 120.00000 * 359.97438 * 17 16 13 46 46 H 0.96996 * 120.00288 * 180.02562 * 21 20 18 47 47 H 1.07996 * 120.43166 * 179.72980 * 26 7 6 48 48 H 1.07997 * 119.50920 * 180.27741 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2117 -2.0110 1.0652 6 6 2.6737 -2.7202 2.1665 7 6 2.8805 -4.0953 2.0461 8 6 3.3718 -4.8939 3.1934 9 8 4.1837 -5.7799 3.0135 10 7 2.9183 -4.6377 4.4364 11 6 2.0090 -3.5124 4.6668 12 6 3.3346 -5.4843 5.5571 13 6 4.6097 -4.9136 6.1811 14 1 4.4171 -3.9030 6.5413 15 8 5.6469 -4.8797 5.1988 16 6 5.0448 -5.7982 7.3512 17 7 6.1951 -5.1883 8.0231 18 6 6.7576 -5.8023 9.1101 19 1 6.3562 -6.7382 9.4696 20 6 7.8439 -5.2215 9.7502 21 7 8.3334 -4.0810 9.3120 22 14 8.6109 -6.0586 11.2336 23 1 9.6853 -6.9790 10.7820 24 1 9.1869 -5.0318 12.1386 25 1 7.5705 -6.8306 11.9593 26 6 2.6163 -4.6987 0.8111 27 6 2.1545 -3.9214 -0.2312 28 7 1.9707 -2.6239 -0.0807 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 2.8707 -2.2156 3.1008 37 1 2.5883 -2.6000 4.8078 38 1 1.3505 -3.3952 3.8060 39 1 1.4114 -3.7047 5.5578 40 1 3.5272 -6.4949 5.1970 41 1 2.5435 -5.5102 6.3064 42 1 5.8712 -5.7465 4.8336 43 1 5.3227 -6.7838 6.9779 44 1 4.2211 -5.8964 8.0584 45 1 6.5559 -4.3479 7.7001 46 1 9.0927 -3.6754 9.7590 47 1 2.7681 -5.7595 0.6770 48 1 1.9444 -4.3814 -1.1854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677129343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:09 Heat of formation + Delta-G solvation = -63.330503 kcal Electronic energy + Delta-G solvation = -29136.275156 eV Core-core repulsion = 24999.763727 eV Total energy + Delta-G solvation = -4136.511429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.26832 -39.95951 -38.40190 -37.21459 -35.49974 -33.97983 -33.65220 -32.99059 -31.26063 -30.52523 -29.36009 -27.65137 -27.18027 -26.07086 -24.40785 -23.69761 -22.74860 -21.75572 -21.12550 -20.04730 -18.45688 -17.33510 -17.13694 -16.93511 -16.38363 -16.31367 -16.21799 -15.84831 -15.14727 -15.01597 -14.58048 -14.52898 -14.33600 -14.18747 -13.76818 -13.53199 -13.46793 -13.22042 -12.94796 -12.71424 -12.69402 -12.68126 -12.40794 -12.31788 -12.13311 -12.06659 -11.50317 -11.32837 -11.16826 -10.92300 -10.79747 -10.68981 -10.41452 -10.15072 -10.13998 -9.83043 -9.73711 -9.57826 -8.87249 -8.84558 -8.58360 -6.89506 -5.72379 -3.01814 0.49975 0.82787 2.50339 2.68278 2.80120 3.45388 3.45615 3.50078 3.52158 3.88236 4.14800 4.47996 4.57447 4.59176 4.60105 4.67489 4.78928 4.80004 4.87087 4.94386 5.00536 5.14046 5.16209 5.27380 5.31652 5.35136 5.36446 5.44350 5.48286 5.50655 5.55344 5.64716 5.72635 5.73318 5.77162 5.78869 6.00210 6.02275 6.23192 6.37437 6.54094 6.75778 6.93005 7.15278 7.46011 7.71028 7.96123 8.23278 8.45852 9.57014 10.15205 10.50777 11.50050 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.002127 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.275047 B =13163.102731 C =13951.431667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.081 3.919 3 C -0.152 4.152 4 O -0.299 6.299 5 C 0.322 3.678 6 C -0.166 4.166 7 C -0.041 4.041 8 C 0.564 3.436 9 O -0.516 6.516 10 N -0.599 5.599 11 C 0.069 3.931 12 C 0.085 3.915 13 C 0.086 3.914 14 H 0.096 0.904 15 O -0.547 6.547 16 C 0.126 3.874 17 N -0.725 5.725 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.164 4.164 27 C 0.138 3.862 28 N -0.531 5.531 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.154 0.846 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.375 0.625 43 H 0.021 0.979 44 H 0.024 0.976 45 H 0.388 0.612 46 H 0.255 0.745 47 H 0.146 0.854 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.926 6.008 -21.689 30.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.025 3.975 3 C -0.209 4.209 4 O -0.207 6.207 5 C 0.143 3.857 6 C -0.187 4.187 7 C -0.052 4.052 8 C 0.351 3.649 9 O -0.392 6.392 10 N -0.331 5.331 11 C -0.073 4.073 12 C -0.038 4.038 13 C 0.025 3.975 14 H 0.114 0.886 15 O -0.352 6.352 16 C -0.003 4.003 17 N -0.370 5.370 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.185 4.185 27 C -0.017 4.017 28 N -0.255 5.255 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.172 0.828 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.222 0.778 43 H 0.039 0.961 44 H 0.042 0.958 45 H 0.223 0.777 46 H 0.065 0.935 47 H 0.164 0.836 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -20.751 6.753 -21.964 30.962 hybrid contribution 0.768 -1.145 1.230 1.847 sum -19.983 5.608 -20.735 29.338 Atomic orbital electron populations 1.22217 0.94836 1.02834 1.02673 1.22369 0.94374 0.92869 0.87872 1.21919 1.02199 0.93759 1.03047 1.86323 1.80041 1.15583 1.38738 1.19623 0.91860 0.84861 0.89309 1.21551 1.03984 0.93195 0.99966 1.20146 0.96911 0.93114 0.94990 1.18028 0.81320 0.83258 0.82255 1.90770 1.31828 1.32120 1.84467 1.47573 1.47189 1.31221 1.07116 1.22190 0.93254 0.89102 1.02798 1.22373 0.98341 0.95080 0.87988 1.22494 0.85871 1.00725 0.88440 0.88577 1.86550 1.55939 1.35255 1.57495 1.21240 0.91687 0.94919 0.92405 1.42247 1.33674 1.27006 1.34070 1.19221 1.09938 1.03805 1.04381 0.91259 1.24771 0.98962 0.97423 0.99844 1.69681 1.26957 1.18598 1.42587 0.86178 0.79222 0.78266 0.82432 1.21707 1.21764 1.20792 1.22045 1.01774 1.02426 0.92211 1.22373 0.93251 0.87398 0.98718 1.67118 1.21069 1.12878 1.24422 0.91902 0.91085 0.92035 0.89238 0.91678 0.90464 0.91507 0.82833 0.91756 0.90800 0.90394 0.89331 0.89251 0.77778 0.96094 0.95788 0.77739 0.93502 0.83620 0.81708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 9.53 37.16 0.35 -0.76 16 2 C 0.08 0.64 3.11 -26.73 -0.08 0.56 16 3 C -0.15 -0.95 9.56 37.16 0.36 -0.59 16 4 O -0.30 -3.08 9.76 -18.75 -0.18 -3.27 16 5 C 0.32 3.46 7.45 -17.16 -0.13 3.33 16 6 C -0.17 -1.78 7.63 -38.84 -0.30 -2.08 16 7 C -0.04 -0.47 5.23 -104.67 -0.55 -1.01 16 8 C 0.56 7.65 6.97 -12.18 -0.08 7.57 16 9 O -0.52 -8.53 15.08 -7.63 -0.12 -8.64 16 10 N -0.60 -7.13 2.83 -182.58 -0.52 -7.64 16 11 C 0.07 0.60 8.95 59.85 0.54 1.14 16 12 C 0.09 1.08 5.18 -4.04 -0.02 1.06 16 13 C 0.09 1.43 3.27 -26.73 -0.09 1.34 16 14 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 15 O -0.55 -10.49 12.00 -48.23 -0.58 -11.07 16 16 C 0.13 2.54 5.90 -4.04 -0.02 2.51 16 17 N -0.73 -19.04 5.55 -59.90 -0.33 -19.37 16 18 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -29.06 13.06 55.49 0.72 -28.33 16 22 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 26 C -0.16 -1.58 9.76 -39.03 -0.38 -1.96 16 27 C 0.14 1.16 11.17 -17.62 -0.20 0.97 16 28 N -0.53 -5.32 8.61 -13.38 -0.12 -5.43 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.75 6.98 -51.93 -0.36 0.39 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.15 1.54 5.47 -52.49 -0.29 1.26 16 37 H 0.06 0.56 6.90 -51.93 -0.36 0.20 16 38 H 0.07 0.57 5.91 -51.93 -0.31 0.26 16 39 H 0.08 0.54 7.84 -51.93 -0.41 0.14 16 40 H 0.09 1.17 7.48 -51.93 -0.39 0.78 16 41 H 0.09 0.92 7.86 -51.93 -0.41 0.51 16 42 H 0.37 6.77 8.33 45.56 0.38 7.15 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.39 11.01 7.67 -40.82 -0.31 10.70 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 48 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -35.48 396.93 -7.66 -43.14 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -6.65 Total: 12.36 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -0.85 Total: 4.46 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.24 Total: -60.79 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.88 Total: -22.98 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.48 -7.66 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677129343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.194 kcal (2) G-P(sol) polarization free energy of solvation -35.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds