Wall clock time and date at job start Tue Mar 31 2020 22:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 O 1.42899 * 109.47346 * 120.00014 * 2 1 3 5 5 C 1.35683 * 116.99865 * 89.99663 * 4 2 1 6 6 C 1.38897 * 119.62211 * 180.02562 * 5 4 2 7 7 C 1.39572 * 118.94591 * 180.02562 * 6 5 4 8 8 C 1.48167 * 120.89153 * 180.02562 * 7 6 5 9 9 O 1.21506 * 119.99879 * 219.50812 * 8 7 6 10 10 N 1.34776 * 120.00053 * 39.50450 * 8 7 6 11 11 C 1.46499 * 119.99875 * 355.89202 * 10 8 7 12 12 C 1.46496 * 120.00139 * 175.89624 * 10 8 7 13 13 C 1.53001 * 109.47046 * 89.99781 * 12 10 8 14 14 H 1.09000 * 109.46996 * 60.00537 * 13 12 10 15 15 O 1.42897 * 109.47427 * 300.00148 * 13 12 10 16 16 C 1.53003 * 109.46819 * 180.02562 * 13 12 10 17 17 N 1.46508 * 109.46927 * 185.00273 * 16 13 12 18 18 C 1.36933 * 119.99661 * 179.72529 * 17 16 13 19 19 H 1.08000 * 120.00473 * 0.26880 * 18 17 16 20 20 C 1.38820 * 119.99765 * 180.27763 * 18 17 16 21 21 N 1.31618 * 119.99914 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99925 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46931 * 89.99585 * 22 20 18 24 24 H 1.48496 * 109.47010 * 209.99337 * 22 20 18 25 25 H 1.48498 * 109.47270 * 329.99784 * 22 20 18 26 26 C 1.39969 * 118.21731 * 0.27302 * 7 6 5 27 27 C 1.37978 * 119.13272 * 359.48146 * 26 7 6 28 28 N 1.31904 * 120.97411 * 0.53221 * 27 26 7 29 29 H 1.08997 * 109.46961 * 299.99494 * 1 2 3 30 30 H 1.08993 * 109.46822 * 60.00289 * 1 2 3 31 31 H 1.09000 * 109.46958 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47328 * 239.99670 * 2 1 3 33 33 H 1.09001 * 109.47094 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47296 * 300.00060 * 3 2 1 35 35 H 1.09007 * 109.46874 * 60.00245 * 3 2 1 36 36 H 1.08000 * 120.52810 * 359.97438 * 6 5 4 37 37 H 1.08999 * 109.47492 * 274.71228 * 11 10 8 38 38 H 1.09001 * 109.47028 * 34.71337 * 11 10 8 39 39 H 1.09002 * 109.47038 * 154.70841 * 11 10 8 40 40 H 1.09005 * 109.47045 * 329.99809 * 12 10 8 41 41 H 1.08996 * 109.47312 * 210.00174 * 12 10 8 42 42 H 0.96701 * 113.99778 * 300.00002 * 15 13 12 43 43 H 1.08995 * 109.47428 * 65.00312 * 16 13 12 44 44 H 1.09006 * 109.47063 * 304.99763 * 16 13 12 45 45 H 0.96997 * 120.00000 * 359.97438 * 17 16 13 46 46 H 0.96996 * 120.00288 * 180.02562 * 21 20 18 47 47 H 1.07996 * 120.43166 * 179.72980 * 26 7 6 48 48 H 1.07997 * 119.50920 * 180.27741 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2117 -2.0110 1.0652 6 6 2.6737 -2.7202 2.1665 7 6 2.8805 -4.0953 2.0461 8 6 3.3718 -4.8939 3.1934 9 8 4.1837 -5.7799 3.0135 10 7 2.9183 -4.6377 4.4364 11 6 2.0090 -3.5124 4.6668 12 6 3.3346 -5.4843 5.5571 13 6 4.6097 -4.9136 6.1811 14 1 4.4171 -3.9030 6.5413 15 8 5.6469 -4.8797 5.1988 16 6 5.0448 -5.7982 7.3512 17 7 6.1951 -5.1883 8.0231 18 6 6.7576 -5.8023 9.1101 19 1 6.3562 -6.7382 9.4696 20 6 7.8439 -5.2215 9.7502 21 7 8.3334 -4.0810 9.3120 22 14 8.6109 -6.0586 11.2336 23 1 9.6853 -6.9790 10.7820 24 1 9.1869 -5.0318 12.1386 25 1 7.5705 -6.8306 11.9593 26 6 2.6163 -4.6987 0.8111 27 6 2.1545 -3.9214 -0.2312 28 7 1.9707 -2.6239 -0.0807 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 2.8707 -2.2156 3.1008 37 1 2.5883 -2.6000 4.8078 38 1 1.3505 -3.3952 3.8060 39 1 1.4114 -3.7047 5.5578 40 1 3.5272 -6.4949 5.1970 41 1 2.5435 -5.5102 6.3064 42 1 5.8712 -5.7465 4.8336 43 1 5.3227 -6.7838 6.9779 44 1 4.2211 -5.8964 8.0584 45 1 6.5559 -4.3479 7.7001 46 1 9.0927 -3.6754 9.7590 47 1 2.7681 -5.7595 0.6770 48 1 1.9444 -4.3814 -1.1854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677129343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:08 Heat of formation + Delta-G solvation = -90.222094 kcal Electronic energy + Delta-G solvation = -29137.441263 eV Core-core repulsion = 24999.763727 eV Total energy + Delta-G solvation = -4137.677536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.07813 -40.89886 -39.22879 -38.54583 -36.61197 -35.90009 -34.25730 -33.86360 -33.17658 -31.32682 -30.74941 -28.16822 -28.10671 -27.45761 -25.63232 -24.60783 -24.14858 -22.81658 -22.35247 -20.90242 -19.28885 -19.23657 -18.27044 -17.79914 -17.57759 -17.18988 -17.06072 -16.67784 -16.56035 -16.37536 -16.02224 -15.53690 -15.29451 -15.11620 -14.94926 -14.77305 -14.49458 -14.23590 -14.10267 -13.98413 -13.72902 -13.37137 -13.26798 -13.17538 -12.99295 -12.87189 -12.85166 -12.77915 -12.60727 -12.17803 -12.05755 -11.91479 -11.83025 -11.78559 -11.41661 -11.11020 -10.98251 -10.95392 -10.57067 -9.70396 -9.54718 -9.02424 -7.95489 -5.25594 -0.32304 0.08001 1.45812 1.48800 1.56993 1.59312 1.78787 2.00705 2.54946 2.67840 3.16395 3.32827 3.36876 3.52184 3.74942 3.84477 3.88902 3.98273 4.03166 4.04958 4.07250 4.15194 4.26032 4.29436 4.42353 4.49704 4.52484 4.62552 4.65755 4.71701 4.72290 4.83155 4.85848 4.87619 4.90429 4.91907 5.01597 5.21258 5.23348 5.27874 5.33763 5.38291 5.46912 6.19406 6.22615 6.25140 6.72124 6.79470 6.96905 7.31348 8.07703 8.30267 9.28063 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.002127 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.275047 B =13163.102731 C =13951.431667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.074 3.926 3 C -0.149 4.149 4 O -0.312 6.312 5 C 0.314 3.686 6 C -0.171 4.171 7 C -0.054 4.054 8 C 0.559 3.441 9 O -0.555 6.555 10 N -0.596 5.596 11 C 0.065 3.935 12 C 0.095 3.905 13 C 0.094 3.906 14 H 0.090 0.910 15 O -0.567 6.567 16 C 0.124 3.876 17 N -0.742 5.742 18 C -0.247 4.247 19 H 0.079 0.921 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.978 3.022 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.265 1.265 26 C -0.166 4.166 27 C 0.146 3.854 28 N -0.535 5.535 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.155 0.845 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.376 0.624 43 H 0.023 0.977 44 H 0.044 0.956 45 H 0.373 0.627 46 H 0.251 0.749 47 H 0.155 0.845 48 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.928 5.651 -22.230 32.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 C -0.206 4.206 4 O -0.220 6.220 5 C 0.135 3.865 6 C -0.192 4.192 7 C -0.065 4.065 8 C 0.347 3.653 9 O -0.433 6.433 10 N -0.327 5.327 11 C -0.077 4.077 12 C -0.028 4.028 13 C 0.034 3.966 14 H 0.108 0.892 15 O -0.373 6.373 16 C -0.003 4.003 17 N -0.385 5.385 18 C -0.379 4.379 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.807 3.193 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.190 1.190 26 C -0.186 4.186 27 C -0.010 4.010 28 N -0.260 5.260 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.173 0.827 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.141 0.859 42 H 0.225 0.775 43 H 0.041 0.959 44 H 0.061 0.939 45 H 0.205 0.795 46 H 0.060 0.940 47 H 0.172 0.828 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -22.823 6.388 -22.507 32.684 hybrid contribution 1.317 -1.025 1.305 2.118 sum -21.506 5.363 -21.202 30.673 Atomic orbital electron populations 1.22175 0.93748 1.02387 1.03640 1.22595 0.95287 0.93359 0.86901 1.21938 1.01665 0.92885 1.04128 1.86308 1.80198 1.15508 1.39997 1.19720 0.92081 0.85169 0.89518 1.21529 1.04419 0.92995 1.00287 1.20076 0.98091 0.93285 0.95008 1.18422 0.80773 0.82934 0.83189 1.90741 1.33538 1.33875 1.85157 1.47652 1.47016 1.31661 1.06392 1.22397 0.93027 0.87873 1.04410 1.22209 0.97178 0.94599 0.88805 1.22445 0.87094 0.99942 0.87163 0.89244 1.86524 1.57192 1.35663 1.57970 1.21452 0.90178 0.95159 0.93541 1.42482 1.35263 1.26643 1.34083 1.19684 1.09683 1.03850 1.04646 0.90297 1.25674 1.00007 0.98340 1.03217 1.69856 1.27627 1.20415 1.44279 0.85071 0.78381 0.77074 0.78800 1.21572 1.22144 1.18974 1.22248 1.01464 1.03068 0.91850 1.22947 0.91612 0.86736 0.99656 1.67212 1.21087 1.13554 1.24101 0.91836 0.89194 0.93130 0.89836 0.92524 0.88304 0.91481 0.82731 0.91888 0.89712 0.88067 0.89697 0.85933 0.77547 0.95891 0.93858 0.79516 0.94043 0.82761 0.78140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.53 71.98 0.69 -1.22 16 2 C 0.07 1.11 3.11 30.60 0.10 1.20 16 3 C -0.15 -1.69 9.56 71.98 0.69 -1.00 16 4 O -0.31 -6.30 9.76 -90.01 -0.88 -7.18 16 5 C 0.31 6.54 7.45 84.80 0.63 7.17 16 6 C -0.17 -3.62 7.63 22.75 0.17 -3.44 16 7 C -0.05 -1.21 5.23 -19.90 -0.10 -1.31 16 8 C 0.56 15.02 6.97 86.88 0.61 15.63 16 9 O -0.55 -18.54 15.08 8.69 0.13 -18.41 16 10 N -0.60 -13.57 2.83 -849.85 -2.40 -15.98 16 11 C 0.06 1.02 8.95 127.77 1.14 2.16 16 12 C 0.10 2.28 5.18 86.38 0.45 2.73 16 13 C 0.09 3.10 3.27 30.60 0.10 3.20 16 14 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 15 O -0.57 -22.18 12.00 -136.55 -1.64 -23.82 16 16 C 0.12 4.89 5.90 86.38 0.51 5.40 16 17 N -0.74 -39.22 5.55 -343.42 -1.91 -41.12 16 18 C -0.25 -14.16 9.99 84.04 0.84 -13.32 16 19 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 20 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 21 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16 22 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 C -0.17 -3.01 9.76 22.63 0.22 -2.79 16 27 C 0.15 2.19 11.17 84.62 0.94 3.13 16 28 N -0.54 -10.04 8.61 -309.15 -2.66 -12.71 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 1.33 6.98 -2.39 -0.02 1.31 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.16 3.10 5.47 -2.91 -0.02 3.09 16 37 H 0.06 1.03 6.90 -2.39 -0.02 1.02 16 38 H 0.08 1.18 5.91 -2.39 -0.01 1.16 16 39 H 0.10 1.13 7.84 -2.39 -0.02 1.11 16 40 H 0.08 2.15 7.48 -2.38 -0.02 2.13 16 41 H 0.12 2.14 7.86 -2.39 -0.02 2.12 16 42 H 0.38 14.02 8.33 -74.06 -0.62 13.41 16 43 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.04 1.57 8.14 -2.38 -0.02 1.56 16 45 H 0.37 21.67 7.67 -92.71 -0.71 20.96 16 46 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 47 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 48 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -77.40 396.93 0.06 -77.34 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: -0.34 Total: 41.04 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 7.45 Total: 13.25 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -6.69 Total: -131.38 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -2.39 Total: -49.40 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.40 0.06 -77.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677129343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.886 kcal (2) G-P(sol) polarization free energy of solvation -77.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds