Wall clock time and date at job start Tue Mar 31 2020 22:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.46753 * 2 1 4 4 O 1.42898 * 109.46796 * 119.99917 * 2 1 3 5 5 C 1.35929 * 116.99314 * 158.12869 * 4 2 1 6 6 C 1.38855 * 120.40140 * 184.38713 * 5 4 2 7 7 N 1.31883 * 120.99942 * 179.97438 * 6 5 4 8 8 C 1.31683 * 121.94042 * 0.02562 * 7 6 5 9 9 C 1.39528 * 120.69015 * 359.97438 * 8 7 6 10 10 C 1.47855 * 120.53038 * 180.02562 * 9 8 7 11 11 O 1.21550 * 120.00171 * 133.00041 * 10 9 8 12 12 N 1.34784 * 119.99764 * 312.99144 * 10 9 8 13 13 C 1.46493 * 119.99739 * 6.16460 * 12 10 9 14 14 C 1.52998 * 109.47129 * 100.55856 * 13 12 10 15 15 O 1.42903 * 109.47152 * 64.99683 * 14 13 12 16 16 C 1.46498 * 119.99848 * 186.16325 * 12 10 9 17 17 C 1.52998 * 109.47180 * 90.00065 * 16 12 10 18 18 N 1.46505 * 109.46926 * 179.97438 * 17 16 12 19 19 C 1.36939 * 119.99663 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00085 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99598 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00280 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46980 * 90.00203 * 23 21 19 25 25 H 1.48502 * 109.47068 * 209.99703 * 23 21 19 26 26 H 1.48496 * 109.47353 * 330.00185 * 23 21 19 27 27 C 1.38843 * 120.40677 * 4.36823 * 5 4 2 28 28 H 1.09003 * 109.46547 * 299.99564 * 1 2 3 29 29 H 1.08998 * 109.47281 * 60.00051 * 1 2 3 30 30 H 1.08999 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46674 * 240.00186 * 2 1 3 32 32 H 1.08998 * 109.47185 * 300.00007 * 3 2 1 33 33 H 1.08994 * 109.47378 * 60.00618 * 3 2 1 34 34 H 1.09005 * 109.46924 * 180.02562 * 3 2 1 35 35 H 1.07995 * 119.50051 * 359.96004 * 6 5 4 36 36 H 1.07995 * 119.65347 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.46884 * 220.55394 * 13 12 10 38 38 H 1.09001 * 109.47504 * 340.55516 * 13 12 10 39 39 H 1.09011 * 109.47289 * 184.99460 * 14 13 12 40 40 H 1.09000 * 109.47350 * 304.99395 * 14 13 12 41 41 H 0.96699 * 113.99849 * 179.97438 * 15 14 13 42 42 H 1.08995 * 109.46626 * 210.00319 * 16 12 10 43 43 H 1.09004 * 109.47217 * 329.99702 * 16 12 10 44 44 H 1.08995 * 109.47549 * 299.99689 * 17 16 12 45 45 H 1.09002 * 109.46898 * 59.99988 * 17 16 12 46 46 H 0.96992 * 120.00018 * 0.02562 * 18 17 16 47 47 H 0.97000 * 119.99861 * 179.97438 * 22 21 19 48 48 H 1.08000 * 120.88275 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2717 -1.1679 1.1205 6 6 3.7741 -1.9133 2.1789 7 7 4.9998 -2.3989 2.1462 8 6 5.7999 -2.2024 1.1189 9 6 5.3727 -1.4643 0.0145 10 6 6.2737 -1.2464 -1.1373 11 8 5.8669 -1.4226 -2.2691 12 7 7.5462 -0.8521 -0.9323 13 6 8.0769 -0.7698 0.4306 14 6 8.9262 -2.0084 0.7229 15 8 10.0729 -2.0117 -0.1298 16 6 8.3984 -0.5058 -2.0725 17 6 8.2561 0.9859 -2.3812 18 7 9.1088 1.3322 -3.5210 19 6 9.1458 2.6212 -3.9817 20 1 8.5467 3.3826 -3.5044 21 6 9.9534 2.9492 -5.0620 22 7 10.6840 2.0214 -5.6432 23 14 10.0034 4.7075 -5.6908 24 1 11.0724 5.4564 -4.9824 25 1 10.2847 4.7039 -7.1489 26 1 8.6931 5.3600 -5.4410 27 6 4.0776 -0.9340 0.0143 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4426 -0.0005 35 1 3.1518 -2.0980 3.0419 36 1 6.7968 -2.6176 1.1309 37 1 8.6930 0.1242 0.5273 38 1 7.2507 -0.7201 1.1399 39 1 9.2479 -1.9910 1.7643 40 1 8.3350 -2.9057 0.5402 41 1 10.6582 -2.7703 0.0011 42 1 9.4374 -0.7293 -1.8304 43 1 8.0950 -1.0877 -2.9428 44 1 7.2171 1.2093 -2.6233 45 1 8.5596 1.5676 -1.5108 46 1 9.6466 0.6483 -3.9498 47 1 11.2480 2.2506 -6.3984 48 1 3.7144 -0.3585 -0.8243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724676305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:33 Heat of formation + Delta-G solvation = -60.546844 kcal Electronic energy + Delta-G solvation = -29692.130421 eV Core-core repulsion = 25555.739701 eV Total energy + Delta-G solvation = -4136.390721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36839 -39.91646 -38.57841 -37.33615 -35.59075 -34.40821 -33.72037 -32.72500 -31.58599 -30.53774 -29.49082 -27.77332 -27.56908 -25.02647 -24.20922 -23.46052 -23.05102 -21.55171 -21.50052 -19.78118 -18.41195 -18.02305 -17.33541 -17.06708 -17.03914 -16.78730 -16.01051 -15.89408 -15.41686 -14.78145 -14.67179 -14.40143 -14.32558 -14.02099 -13.79883 -13.63885 -13.34801 -13.21184 -13.15856 -12.95301 -12.76337 -12.70669 -12.63663 -12.23270 -12.17058 -11.79042 -11.43958 -11.23853 -11.18146 -10.91174 -10.87543 -10.61477 -10.49596 -10.19924 -10.08067 -10.04998 -9.73199 -9.58544 -8.83486 -8.77187 -8.55553 -6.88867 -5.72261 -3.01292 0.44894 0.84927 2.53508 2.71527 2.91086 3.41080 3.46218 3.50849 3.53097 3.97168 4.01761 4.21578 4.33408 4.35530 4.45682 4.49842 4.63879 4.66550 4.69822 4.83248 4.96523 5.03132 5.10585 5.15758 5.23662 5.30401 5.33407 5.36684 5.53300 5.58190 5.58973 5.64270 5.70897 5.78433 5.82052 5.95139 5.96455 6.09408 6.27374 6.54121 6.77376 6.83342 6.94443 7.37448 7.50268 7.52656 7.72946 8.10822 8.46210 9.57054 10.14044 10.49493 11.50674 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.003070 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.430489 B = 9119.164597 C =11325.388953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 C -0.184 4.184 4 O -0.301 6.301 5 C 0.084 3.916 6 C 0.086 3.914 7 N -0.445 5.445 8 C 0.074 3.926 9 C -0.130 4.130 10 C 0.555 3.445 11 O -0.520 6.520 12 N -0.588 5.588 13 C 0.094 3.906 14 C 0.056 3.944 15 O -0.559 6.559 16 C 0.107 3.893 17 C 0.144 3.856 18 N -0.728 5.728 19 C -0.237 4.237 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.379 0.621 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.017 0.983 45 H 0.017 0.983 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.400 -9.975 19.621 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.242 4.242 4 O -0.214 6.214 5 C 0.036 3.964 6 C -0.073 4.073 7 N -0.153 5.153 8 C -0.083 4.083 9 C -0.135 4.135 10 C 0.341 3.659 11 O -0.396 6.396 12 N -0.320 5.320 13 C -0.030 4.030 14 C -0.023 4.023 15 O -0.364 6.364 16 C -0.014 4.014 17 C 0.015 3.985 18 N -0.373 5.373 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.146 4.146 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.185 0.815 36 H 0.184 0.816 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.226 0.774 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.771 -9.806 19.612 27.009 hybrid contribution 0.288 0.853 -1.198 1.499 sum -15.483 -8.953 18.414 25.670 Atomic orbital electron populations 1.21837 0.91806 1.03324 1.03362 1.22583 0.95900 0.92869 0.87008 1.22436 1.02401 0.95657 1.03679 1.86150 1.25666 1.69561 1.40033 1.20021 0.85581 0.95496 0.95344 1.22373 0.92442 0.95042 0.97402 1.67760 1.03325 1.18357 1.25898 1.23230 1.00002 0.96825 0.88280 1.20917 0.95217 1.00927 0.96436 1.18146 0.81872 0.77737 0.88152 1.90838 1.75055 1.50396 1.23343 1.47725 1.11187 1.65331 1.07768 1.21980 0.98094 0.99053 0.83864 1.22756 0.87941 0.97793 0.93837 1.86604 1.36567 1.50491 1.62737 1.21867 0.94827 0.97112 0.87631 1.20890 0.94581 0.91849 0.91157 1.42186 1.51613 1.08901 1.34616 1.19198 1.20957 0.86184 1.10515 0.91287 1.24744 0.99753 0.97717 0.98779 1.69667 1.31415 1.31850 1.25192 0.86171 0.77564 0.84379 0.77968 1.21712 1.21728 1.20806 1.21828 0.92986 1.01172 0.98660 0.91302 0.90142 0.91511 0.90562 0.90409 0.91140 0.91738 0.81504 0.81604 0.88844 0.88389 0.92149 0.93387 0.77410 0.88311 0.89857 0.96476 0.96512 0.78166 0.93501 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.56 37.16 0.36 -0.52 16 2 C 0.07 0.58 2.86 -26.73 -0.08 0.51 16 3 C -0.18 -1.45 9.12 37.16 0.34 -1.11 16 4 O -0.30 -2.86 9.83 -19.52 -0.19 -3.06 16 5 C 0.08 0.86 6.58 -39.13 -0.26 0.60 16 6 C 0.09 0.83 11.13 -17.30 -0.19 0.63 16 7 N -0.45 -4.69 10.34 -12.80 -0.13 -4.82 16 8 C 0.07 0.79 8.57 -17.13 -0.15 0.64 16 9 C -0.13 -1.63 5.07 -104.84 -0.53 -2.17 16 10 C 0.55 8.75 7.28 -12.32 -0.09 8.66 16 11 O -0.52 -10.30 16.57 5.32 0.09 -10.21 16 12 N -0.59 -8.72 2.49 -174.80 -0.43 -9.16 16 13 C 0.09 1.03 5.38 -4.05 -0.02 1.01 16 14 C 0.06 0.49 6.56 37.16 0.24 0.73 16 15 O -0.56 -6.02 11.59 -35.23 -0.41 -6.43 16 16 C 0.11 1.96 5.41 -4.04 -0.02 1.94 16 17 C 0.14 3.16 6.58 -4.04 -0.03 3.13 16 18 N -0.73 -19.55 5.60 -59.91 -0.34 -19.89 16 19 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 23 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 C -0.12 -1.40 7.90 -38.72 -0.31 -1.71 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.64 6.49 -51.93 -0.34 0.31 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.59 6.65 -51.93 -0.35 0.25 16 35 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.17 1.48 4.14 -52.49 -0.22 1.26 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.10 0.92 4.91 -51.93 -0.25 0.66 16 39 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 40 H 0.05 0.39 6.38 -51.93 -0.33 0.06 16 41 H 0.38 2.39 9.12 45.56 0.42 2.80 16 42 H 0.10 1.78 6.19 -51.93 -0.32 1.46 16 43 H 0.08 1.69 7.35 -51.93 -0.38 1.31 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 10.76 7.67 -40.82 -0.31 10.44 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 48 H 0.15 1.76 5.50 -52.49 -0.29 1.47 16 LS Contribution 389.71 15.07 5.87 5.87 Total: -1.00 -36.37 389.71 -6.97 -43.34 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.15 Total: 9.90 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -0.98 Total: 4.76 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.18 Total: -62.11 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.51 Total: -19.69 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.37 -6.97 -43.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724676305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.208 kcal (2) G-P(sol) polarization free energy of solvation -36.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds