Wall clock time and date at job start Tue Mar 31 2020 22:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.46753 * 2 1 4 4 O 1.42898 * 109.46796 * 119.99917 * 2 1 3 5 5 C 1.35929 * 116.99314 * 158.12869 * 4 2 1 6 6 C 1.38855 * 120.40140 * 184.38713 * 5 4 2 7 7 N 1.31883 * 120.99942 * 179.97438 * 6 5 4 8 8 C 1.31683 * 121.94042 * 0.02562 * 7 6 5 9 9 C 1.39528 * 120.69015 * 359.97438 * 8 7 6 10 10 C 1.47855 * 120.53038 * 180.02562 * 9 8 7 11 11 O 1.21550 * 120.00171 * 133.00041 * 10 9 8 12 12 N 1.34784 * 119.99764 * 312.99144 * 10 9 8 13 13 C 1.46493 * 119.99739 * 6.16460 * 12 10 9 14 14 C 1.52998 * 109.47129 * 100.55856 * 13 12 10 15 15 O 1.42903 * 109.47152 * 64.99683 * 14 13 12 16 16 C 1.46498 * 119.99848 * 186.16325 * 12 10 9 17 17 C 1.52998 * 109.47180 * 90.00065 * 16 12 10 18 18 N 1.46505 * 109.46926 * 179.97438 * 17 16 12 19 19 C 1.36939 * 119.99663 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00085 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99598 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00280 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46980 * 90.00203 * 23 21 19 25 25 H 1.48502 * 109.47068 * 209.99703 * 23 21 19 26 26 H 1.48496 * 109.47353 * 330.00185 * 23 21 19 27 27 C 1.38843 * 120.40677 * 4.36823 * 5 4 2 28 28 H 1.09003 * 109.46547 * 299.99564 * 1 2 3 29 29 H 1.08998 * 109.47281 * 60.00051 * 1 2 3 30 30 H 1.08999 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46674 * 240.00186 * 2 1 3 32 32 H 1.08998 * 109.47185 * 300.00007 * 3 2 1 33 33 H 1.08994 * 109.47378 * 60.00618 * 3 2 1 34 34 H 1.09005 * 109.46924 * 180.02562 * 3 2 1 35 35 H 1.07995 * 119.50051 * 359.96004 * 6 5 4 36 36 H 1.07995 * 119.65347 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.46884 * 220.55394 * 13 12 10 38 38 H 1.09001 * 109.47504 * 340.55516 * 13 12 10 39 39 H 1.09011 * 109.47289 * 184.99460 * 14 13 12 40 40 H 1.09000 * 109.47350 * 304.99395 * 14 13 12 41 41 H 0.96699 * 113.99849 * 179.97438 * 15 14 13 42 42 H 1.08995 * 109.46626 * 210.00319 * 16 12 10 43 43 H 1.09004 * 109.47217 * 329.99702 * 16 12 10 44 44 H 1.08995 * 109.47549 * 299.99689 * 17 16 12 45 45 H 1.09002 * 109.46898 * 59.99988 * 17 16 12 46 46 H 0.96992 * 120.00018 * 0.02562 * 18 17 16 47 47 H 0.97000 * 119.99861 * 179.97438 * 22 21 19 48 48 H 1.08000 * 120.88275 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2717 -1.1679 1.1205 6 6 3.7741 -1.9133 2.1789 7 7 4.9998 -2.3989 2.1462 8 6 5.7999 -2.2024 1.1189 9 6 5.3727 -1.4643 0.0145 10 6 6.2737 -1.2464 -1.1373 11 8 5.8669 -1.4226 -2.2691 12 7 7.5462 -0.8521 -0.9323 13 6 8.0769 -0.7698 0.4306 14 6 8.9262 -2.0084 0.7229 15 8 10.0729 -2.0117 -0.1298 16 6 8.3984 -0.5058 -2.0725 17 6 8.2561 0.9859 -2.3812 18 7 9.1088 1.3322 -3.5210 19 6 9.1458 2.6212 -3.9817 20 1 8.5467 3.3826 -3.5044 21 6 9.9534 2.9492 -5.0620 22 7 10.6840 2.0214 -5.6432 23 14 10.0034 4.7075 -5.6908 24 1 11.0724 5.4564 -4.9824 25 1 10.2847 4.7039 -7.1489 26 1 8.6931 5.3600 -5.4410 27 6 4.0776 -0.9340 0.0143 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4426 -0.0005 35 1 3.1518 -2.0980 3.0419 36 1 6.7968 -2.6176 1.1309 37 1 8.6930 0.1242 0.5273 38 1 7.2507 -0.7201 1.1399 39 1 9.2479 -1.9910 1.7643 40 1 8.3350 -2.9057 0.5402 41 1 10.6582 -2.7703 0.0011 42 1 9.4374 -0.7293 -1.8304 43 1 8.0950 -1.0877 -2.9428 44 1 7.2171 1.2093 -2.6233 45 1 8.5596 1.5676 -1.5108 46 1 9.6466 0.6483 -3.9498 47 1 11.2480 2.2506 -6.3984 48 1 3.7144 -0.3585 -0.8243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724676305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:32 Heat of formation + Delta-G solvation = -88.620211 kcal Electronic energy + Delta-G solvation = -29693.347774 eV Core-core repulsion = 25555.739701 eV Total energy + Delta-G solvation = -4137.608073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.28572 -40.95337 -39.43773 -38.31154 -37.09285 -35.99304 -34.42272 -33.88091 -33.22713 -31.68040 -30.55584 -29.19070 -28.27279 -26.39093 -25.20082 -24.89865 -24.03755 -23.22197 -22.21813 -20.91124 -19.48419 -19.11297 -18.84533 -18.16066 -17.89195 -17.70503 -17.19648 -16.92375 -16.56653 -16.31371 -15.64990 -15.44350 -15.41673 -15.30219 -15.09542 -15.00513 -14.74963 -14.56377 -14.11176 -14.02995 -13.56650 -13.52627 -13.19290 -13.15626 -13.08914 -12.95953 -12.91063 -12.78596 -12.61545 -12.20582 -12.15014 -12.07634 -11.90908 -11.83423 -11.59655 -11.01300 -10.99929 -10.88867 -10.63445 -9.85082 -9.56944 -9.09291 -7.99038 -5.30571 -0.45428 0.00397 1.37919 1.44981 1.47866 1.56304 1.74154 1.95780 2.53588 2.53967 3.05996 3.25434 3.33846 3.42639 3.51351 3.62867 3.71326 3.79952 3.89493 3.97255 4.03451 4.05726 4.09657 4.21188 4.26734 4.34323 4.42453 4.55693 4.61399 4.64037 4.66528 4.70768 4.74126 4.80401 4.83789 4.86505 5.01174 5.03881 5.13912 5.19394 5.22867 5.36423 5.45539 6.07569 6.18776 6.21840 6.66927 6.87390 6.97112 7.27812 7.98585 8.25096 9.24429 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.003070 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.430489 B = 9119.164597 C =11325.388953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 C -0.183 4.183 4 O -0.301 6.301 5 C 0.084 3.916 6 C 0.097 3.903 7 N -0.448 5.448 8 C 0.085 3.915 9 C -0.146 4.146 10 C 0.554 3.446 11 O -0.572 6.572 12 N -0.584 5.584 13 C 0.086 3.914 14 C 0.057 3.943 15 O -0.588 6.588 16 C 0.127 3.873 17 C 0.150 3.850 18 N -0.741 5.741 19 C -0.253 4.253 20 H 0.073 0.927 21 C -0.072 4.072 22 N -0.967 5.967 23 Si 0.980 3.020 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.271 1.271 27 C -0.128 4.128 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.198 0.802 36 H 0.185 0.815 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.397 0.603 42 H 0.105 0.895 43 H 0.058 0.942 44 H -0.001 1.001 45 H 0.027 0.973 46 H 0.376 0.624 47 H 0.254 0.746 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.277 -9.810 22.098 29.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.011 3.989 3 C -0.240 4.240 4 O -0.214 6.214 5 C 0.036 3.964 6 C -0.061 4.061 7 N -0.156 5.156 8 C -0.072 4.072 9 C -0.151 4.151 10 C 0.342 3.658 11 O -0.452 6.452 12 N -0.315 5.315 13 C -0.036 4.036 14 C -0.021 4.021 15 O -0.397 6.397 16 C 0.004 3.996 17 C 0.023 3.977 18 N -0.384 5.384 19 C -0.384 4.384 20 H 0.091 0.909 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.807 3.193 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.196 1.196 27 C -0.155 4.155 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.214 0.786 36 H 0.202 0.798 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.247 0.753 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.017 0.983 45 H 0.044 0.956 46 H 0.208 0.792 47 H 0.063 0.937 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.650 -9.651 22.163 29.352 hybrid contribution 0.486 0.781 -1.888 2.100 sum -16.164 -8.871 20.275 27.405 Atomic orbital electron populations 1.21852 0.89961 1.03777 1.04330 1.22751 0.97276 0.92604 0.86262 1.22425 1.01231 0.95848 1.04487 1.86155 1.25077 1.69539 1.40633 1.20074 0.85769 0.95593 0.94970 1.22893 0.92270 0.93309 0.97669 1.67880 1.03690 1.18542 1.25502 1.23425 1.00717 0.95725 0.87349 1.20659 0.95052 1.03205 0.96161 1.18644 0.82105 0.76602 0.88406 1.90803 1.75979 1.52806 1.25615 1.47742 1.10736 1.64564 1.08443 1.22317 0.99076 1.00367 0.81803 1.22809 0.87347 0.96630 0.95344 1.86533 1.37505 1.51975 1.63699 1.21404 0.95663 0.94139 0.88382 1.20923 0.92554 0.94456 0.89803 1.42361 1.52101 1.08160 1.35810 1.19586 1.20860 0.87204 1.10797 0.90904 1.25651 0.99586 1.02167 0.99095 1.69830 1.32222 1.34029 1.25652 0.85063 0.78057 0.79182 0.76953 1.20784 1.21822 1.19586 1.21842 0.93064 1.01381 0.99168 0.90647 0.88860 0.91318 0.91465 0.89560 0.90376 0.93513 0.78562 0.79846 0.89361 0.86442 0.88619 0.92474 0.75270 0.87695 0.92317 0.98266 0.95555 0.79242 0.93720 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.56 71.99 0.69 -0.80 16 2 C 0.07 1.03 2.86 30.60 0.09 1.12 16 3 C -0.18 -2.79 9.12 71.98 0.66 -2.14 16 4 O -0.30 -5.30 9.83 -92.75 -0.91 -6.21 16 5 C 0.08 1.62 6.58 22.56 0.15 1.77 16 6 C 0.10 1.61 11.13 84.83 0.94 2.56 16 7 N -0.45 -8.22 10.34 -194.40 -2.01 -10.23 16 8 C 0.08 1.64 8.57 85.03 0.73 2.37 16 9 C -0.15 -3.62 5.07 -20.01 -0.10 -3.73 16 10 C 0.55 17.97 7.28 86.79 0.63 18.60 16 11 O -0.57 -23.94 16.57 -3.87 -0.06 -24.00 16 12 N -0.58 -17.51 2.49 -825.23 -2.05 -19.56 16 13 C 0.09 1.78 5.38 86.38 0.46 2.25 16 14 C 0.06 0.87 6.56 71.98 0.47 1.34 16 15 O -0.59 -11.85 11.59 -148.98 -1.73 -13.57 16 16 C 0.13 4.82 5.41 86.38 0.47 5.29 16 17 C 0.15 6.81 6.58 86.38 0.57 7.38 16 18 N -0.74 -40.92 5.60 -343.45 -1.92 -42.85 16 19 C -0.25 -14.98 9.99 84.03 0.84 -14.14 16 20 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 22 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16 23 Si 0.98 47.39 29.55 68.60 2.03 49.41 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 27 C -0.13 -3.00 7.90 22.83 0.18 -2.82 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 1.16 6.49 -2.39 -0.02 1.14 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 0.87 6.65 -2.38 -0.02 0.86 16 35 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.19 2.79 4.14 -2.91 -0.01 2.77 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.12 1.97 4.91 -2.39 -0.01 1.96 16 39 H 0.10 0.84 8.14 -2.38 -0.02 0.83 16 40 H 0.06 0.78 6.38 -2.39 -0.02 0.77 16 41 H 0.40 4.37 9.12 -74.06 -0.68 3.70 16 42 H 0.10 3.86 6.19 -2.39 -0.01 3.85 16 43 H 0.06 2.52 7.35 -2.38 -0.02 2.50 16 44 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.38 21.79 7.67 -92.71 -0.71 21.08 16 47 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 48 H 0.14 3.49 5.50 -2.91 -0.02 3.48 16 Total: -1.00 -79.75 389.71 0.49 -79.26 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.38 Total: 33.36 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 7.24 Total: 15.18 kcal Atomic # 7 Polarization: -127.72 SS G_CDS: -5.70 Total: -133.43 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -2.70 Total: -43.79 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Total: -79.75 0.49 -79.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724676305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.362 kcal (2) G-P(sol) polarization free energy of solvation -79.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds