Wall clock time and date at job start Tue Mar 31 2020 22:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47130 * 230.31634 * 3 2 1 5 5 C 1.42901 * 113.99764 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46664 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.46796 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00168 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00227 * 180.02562 * 7 6 5 10 10 C 1.47430 * 125.64510 * 4.97811 * 9 7 6 11 11 C 1.54906 * 104.83226 * 204.09631 * 10 9 7 12 12 C 1.55163 * 101.58246 * 322.98981 * 11 10 9 13 13 C 1.47022 * 125.65427 * 184.93728 * 9 7 6 14 14 H 1.09007 * 110.00913 * 59.48387 * 13 9 7 15 15 C 1.52998 * 109.88167 * 298.39680 * 13 9 7 16 16 N 1.46900 * 109.47201 * 177.05498 * 15 13 9 17 17 C 1.46901 * 110.99803 * 184.89896 * 16 15 13 18 18 C 1.50706 * 109.46741 * 180.02562 * 17 16 15 19 19 O 1.21292 * 120.00030 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99822 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00120 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99955 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00330 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00210 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99766 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47046 * 90.00261 * 25 23 21 27 27 H 1.48505 * 109.47176 * 209.99924 * 25 23 21 28 28 H 1.48499 * 109.47447 * 330.00031 * 25 23 21 29 29 H 4.38451 * 5.44532 * 179.97438 * 4 1 2 30 30 H 1.09007 * 109.46524 * 110.31767 * 3 2 1 31 31 H 1.08998 * 109.47226 * 350.32472 * 3 2 1 32 32 H 1.08997 * 109.46907 * 60.00212 * 5 4 3 33 33 H 1.09002 * 109.47133 * 300.00193 * 5 4 3 34 34 H 1.09006 * 109.47125 * 60.00510 * 6 5 4 35 35 H 1.09002 * 109.47443 * 299.99930 * 6 5 4 36 36 H 1.09001 * 110.36425 * 322.93066 * 10 9 7 37 37 H 1.08996 * 110.36750 * 85.14525 * 10 9 7 38 38 H 1.08996 * 111.00876 * 204.91751 * 11 10 9 39 39 H 1.08999 * 111.01166 * 81.06347 * 11 10 9 40 40 H 1.09003 * 110.71532 * 277.14220 * 12 11 10 41 41 H 1.09000 * 110.72399 * 153.86499 * 12 11 10 42 42 H 1.09006 * 109.46823 * 297.05137 * 15 13 9 43 43 H 1.09002 * 109.47184 * 57.04981 * 15 13 9 44 44 H 1.00895 * 110.99648 * 308.85739 * 16 15 13 45 45 H 1.09000 * 109.47161 * 299.99764 * 17 16 15 46 46 H 1.08998 * 109.46887 * 60.00273 * 17 16 15 47 47 H 0.97007 * 120.00027 * 359.97438 * 20 18 17 48 48 H 0.96993 * 119.99838 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1220 0.8612 1.0368 5 6 4.5465 0.9343 1.1232 6 6 4.9405 1.8778 2.2613 7 6 6.4428 1.9545 2.3529 8 8 7.1305 1.3175 1.5833 9 7 7.0221 2.7308 3.2900 10 6 6.3138 3.4726 4.3491 11 6 7.2692 4.6315 4.7284 12 6 8.6549 3.9426 4.6153 13 6 8.4651 2.9777 3.4259 14 1 8.8533 3.4321 2.5143 15 6 9.1944 1.6614 3.7021 16 7 10.6412 1.9073 3.7663 17 6 11.3831 0.6481 3.9147 18 6 12.8603 0.9399 3.9774 19 8 13.2561 2.0842 3.9052 20 7 13.7417 -0.0707 4.1128 21 6 15.0854 0.1947 4.1705 22 1 15.4378 1.2137 4.1069 23 6 15.9940 -0.8471 4.3106 24 7 17.2821 -0.5926 4.3663 25 14 15.3845 -2.6094 4.4212 26 1 15.3051 -3.1922 3.0576 27 1 16.3260 -3.4079 5.2466 28 1 14.0381 -2.6292 5.0471 29 1 -1.0502 0.0000 -0.0003 30 1 3.0091 0.3577 -0.9638 31 1 3.0098 -1.0122 0.1727 32 1 4.9486 1.3109 0.1828 33 1 4.9501 -0.0592 1.3191 34 1 4.5383 1.5007 3.2017 35 1 4.5369 2.8714 2.0659 36 1 5.3709 3.8669 3.9703 37 1 6.1362 2.8280 5.2098 38 1 7.0845 4.9726 5.7470 39 1 7.1839 5.4559 4.0205 40 1 8.8867 3.3908 5.5263 41 1 9.4329 4.6744 4.3978 42 1 8.8534 1.2495 4.6520 43 1 8.9813 0.9530 2.9016 44 1 10.9571 2.4199 2.9567 45 1 11.0724 0.1493 4.8327 46 1 11.1760 0.0017 3.0618 47 1 13.4252 -0.9859 4.1703 48 1 17.9163 -1.3199 4.4645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733342283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:05 Heat of formation + Delta-G solvation = -50.580963 kcal Electronic energy + Delta-G solvation = -28065.507902 eV Core-core repulsion = 23929.549335 eV Total energy + Delta-G solvation = -4135.958568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.60298 -38.73763 -38.39596 -37.71647 -35.34716 -33.95358 -33.84390 -32.45926 -31.64154 -31.37427 -30.22552 -27.46583 -26.94502 -25.07341 -24.32137 -23.05376 -22.44240 -21.05201 -19.56624 -19.22147 -18.78791 -18.27956 -17.78770 -17.06003 -16.72409 -16.45172 -15.82843 -15.57175 -15.48772 -15.22918 -15.01314 -14.71441 -14.14016 -13.91523 -13.86344 -13.68913 -13.47023 -13.14505 -13.05085 -12.91673 -12.56675 -12.44683 -12.16406 -12.01859 -11.94149 -11.75304 -11.67857 -11.44416 -11.17727 -11.01760 -10.93850 -10.91917 -10.90256 -10.57078 -10.13474 -10.03982 -9.95262 -9.54570 -8.98006 -8.53490 -8.16645 -8.08948 -6.28833 -3.80029 1.95781 2.29812 2.32800 2.57507 3.05197 3.09296 3.17055 3.41472 3.77779 3.97817 4.12304 4.17508 4.20887 4.31577 4.48521 4.54150 4.67742 4.74705 4.79584 4.87768 4.90216 4.92385 4.99761 5.12393 5.17581 5.24214 5.31140 5.33400 5.35701 5.43426 5.50430 5.59008 5.67774 5.73811 5.79980 5.86171 5.89740 5.97336 6.12090 6.18265 6.59989 7.08021 7.08206 7.20807 7.58764 7.61274 7.83515 8.17067 8.62547 8.97443 9.45193 9.85738 10.84346 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.001898 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.942950 B =14746.230251 C =16476.810311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.193 4.193 3 C 0.174 3.826 4 O -0.387 6.387 5 C 0.077 3.923 6 C -0.134 4.134 7 C 0.532 3.468 8 O -0.536 6.536 9 N -0.614 5.614 10 C 0.098 3.902 11 C -0.137 4.137 12 C -0.115 4.115 13 C 0.139 3.861 14 H 0.077 0.923 15 C 0.048 3.952 16 N -0.663 5.663 17 C 0.050 3.950 18 C 0.452 3.548 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.222 0.778 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.350 0.650 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.143 3.890 -3.299 33.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.193 4.193 3 C 0.098 3.902 4 O -0.307 6.307 5 C 0.000 4.000 6 C -0.174 4.174 7 C 0.321 3.679 8 O -0.413 6.413 9 N -0.348 5.348 10 C -0.025 4.025 11 C -0.175 4.175 12 C -0.153 4.153 13 C 0.036 3.964 14 H 0.095 0.905 15 C -0.082 4.082 16 N -0.296 5.296 17 C -0.083 4.083 18 C 0.237 3.763 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.239 0.761 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.169 0.831 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -32.419 4.431 -3.012 32.859 hybrid contribution -0.446 -2.055 -0.835 2.262 sum -32.865 2.377 -3.847 33.175 Atomic orbital electron populations 1.24999 0.95914 0.99457 0.98831 1.22557 0.93899 1.01299 1.01585 1.19059 0.84632 0.94853 0.91624 1.87852 1.21675 1.67056 1.54091 1.22171 0.79795 0.99625 0.98362 1.21436 0.92321 1.02522 1.01147 1.20025 0.89835 0.78426 0.79628 1.90745 1.65198 1.43382 1.41958 1.48538 1.07833 1.48033 1.30430 1.22402 0.96096 0.93550 0.90479 1.22837 0.95129 0.96999 1.02543 1.22613 0.96720 0.97929 0.97992 1.21574 0.79521 0.95805 0.99478 0.90527 1.22313 0.88468 0.96246 1.01219 1.60067 1.01495 1.19824 1.48242 1.21687 0.93557 0.91628 1.01451 1.19700 0.86727 0.85947 0.83887 1.90556 1.79572 1.20693 1.53821 1.42206 1.07210 1.07121 1.66539 1.19436 0.78934 0.97524 1.47433 0.86270 1.25029 0.95112 0.98332 0.97656 1.69622 1.00665 1.32798 1.49129 0.86676 0.78871 0.84987 0.78889 1.19663 1.20178 1.19484 0.76110 0.90546 0.90528 0.91884 0.91869 0.87996 0.87952 0.90454 0.90971 0.89639 0.90615 0.89698 0.89345 0.91194 0.93636 0.83086 0.89598 0.93690 0.79691 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 19.25 29.55 0.57 -0.60 16 2 C -0.19 -1.59 13.73 -37.12 -0.51 -2.10 16 3 C 0.17 1.25 6.41 34.37 0.22 1.47 16 4 O -0.39 -3.43 10.30 -35.23 -0.36 -3.79 16 5 C 0.08 0.63 5.23 37.16 0.19 0.82 16 6 C -0.13 -0.98 5.00 -27.88 -0.14 -1.12 16 7 C 0.53 5.55 7.67 -10.98 -0.08 5.47 16 8 O -0.54 -7.62 14.80 5.55 0.08 -7.54 16 9 N -0.61 -5.72 3.07 -163.01 -0.50 -6.22 16 10 C 0.10 0.60 6.74 -2.53 -0.02 0.58 16 11 C -0.14 -0.85 7.09 -24.58 -0.17 -1.02 16 12 C -0.11 -1.05 6.24 -24.89 -0.16 -1.20 16 13 C 0.14 1.52 3.05 -66.96 -0.20 1.32 16 14 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 15 C 0.05 0.63 5.08 -3.82 -0.02 0.61 16 16 N -0.66 -10.56 5.91 -115.05 -0.68 -11.24 16 17 C 0.05 0.87 6.16 -4.97 -0.03 0.84 16 18 C 0.45 10.49 7.82 -10.98 -0.09 10.40 16 19 O -0.56 -15.31 15.78 5.55 0.09 -15.22 16 20 N -0.59 -14.41 5.09 -10.96 -0.06 -14.46 16 21 C -0.30 -8.75 10.16 -14.94 -0.15 -8.90 16 22 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 24 N -0.88 -26.03 13.96 55.50 0.77 -25.26 16 25 Si 0.88 19.71 27.74 -169.99 -4.71 15.00 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -5.53 6.52 56.52 0.37 -5.17 16 29 H 0.22 0.63 7.80 -54.08 -0.42 0.21 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.61 7.96 -51.93 -0.41 0.19 16 36 H 0.08 0.33 7.48 -51.93 -0.39 -0.06 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.84 7.80 -51.93 -0.41 0.44 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 43 H 0.05 0.68 6.59 -51.93 -0.34 0.33 16 44 H 0.35 5.84 8.36 -39.29 -0.33 5.52 16 45 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.37 7.98 5.76 -40.82 -0.24 7.74 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 405.62 15.07 6.11 6.11 Total: -1.00 -35.96 405.62 -7.52 -43.48 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.58 Total: 11.53 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -0.68 Total: 7.62 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.46 Total: -57.19 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.19 Total: -26.55 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.71 Total: 15.00 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.96 -7.52 -43.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733342283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.103 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds